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CAJDKB010000002.1__CAD0300278.1__X__00067

Bact-Vir

CAJDKB010000002.1__CAD0300278.1__X__00067

Identity

Kingdom:
phage

Quality

76.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-98
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.66 53.0 4.44e-01 90.8% 93.0%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.08e-01 89.2% 50.9%
3u9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.60e-01 89.2% 85.5%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.42e-01 89.2% 77.1%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.51e-01 90.8% 84.4%
1i27A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.33e-01 89.2% 80.8%
3jckC00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 2.72e-01 84.6% 15.1%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.91e-01 89.2% 60.9%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.40e-01 87.7% 90.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.05e-01 89.2% 70.5%
2yilA02 3.30.30.180 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 31.0 3.41e-01 89.2% 64.7%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.18e-01 89.2% 80.3%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.18e-01 90.8% 76.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.28e-01 87.7% 88.9%
3dlcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 3.05e-01 87.7% 84.0%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.13e-01 89.2% 82.6%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.55 43.0 3.86e-01 89.2% 63.5%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.55 42.0 3.70e-01 89.2% 69.4%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.54 38.0 2.87e-01 75.4% 65.6%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.15e-01 90.8% 80.0%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.14e-01 89.2% 85.3%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.98e-01 89.2% 79.7%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.88e-01 89.2% 70.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.82e-01 90.8% 70.7%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.82e-01 89.2% 67.9%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.12e-01 96.9% 82.9%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.53 40.0 3.84e-01 87.7% 70.9%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.52 42.0 3.99e-01 89.2% 79.5%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.53e-01 89.2% 57.4%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 40.0 3.13e-01 84.6% 83.2%
1khvA04 6.10.140.320 Special › Helix non-globular › Helix Hairpins › 0.52 38.0 4.08e-01 78.5% 98.1%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.88e-01 90.8% 75.0%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.68e-01 89.2% 67.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.60e-01 90.8% 61.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.51e-01 100.0% 70.7%
4ag6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.07e-01 100.0% 95.5%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.51 34.0 3.47e-01 100.0% 72.1%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.51 40.0 3.76e-01 87.7% 70.7%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 42.0 2.63e-01 93.8% 74.7%
1sb7A01 3.30.2350.20 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain 0.50 40.0 2.83e-01 86.2% 79.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991687 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.93e-01 87.7% 96.0%
4997403 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 50.0 5.57e-01 84.6% 96.0%
3367832 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 54.0 3.07e-01 89.2% 7.5%
5061659 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.49e-01 89.2% 81.3%
3426986 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.70 55.0 5.57e-01 89.2% 86.2%
4031731 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.39e-01 89.2% 85.3%
3502634 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.69 54.0 5.48e-01 89.2% 86.2%
4994983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.90e-01 89.2% 72.9%
4991792 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 5.24e-01 89.2% 84.1%
4968723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 3.77e-01 89.2% 42.5%
3614122 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.48e-01 89.2% 69.3%
5076820 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.46e-01 89.2% 74.3%
4973870 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.68e-01 89.2% 43.5%
3735293 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.61 47.0 3.24e-01 89.2% 27.3%
4948719 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.60 45.0 3.88e-01 83.1% 51.0%
5027056 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.23e-01 89.2% 62.2%
3799483 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.59 41.0 4.57e-01 86.2% 94.0%
3252578 5.1.4.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.58 51.0 3.02e-01 100.0% 23.5%
4942419 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.58 47.0 4.39e-01 93.8% 71.2%
3506709 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.57 46.0 3.91e-01 89.2% 53.6%
1935905 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.57 45.0 3.59e-01 89.2% 41.6%
None 0.57 40.0 2.87e-01 73.8% 93.7%
4964213 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.57 45.0 4.28e-01 93.8% 71.2%
3827338 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.48e-01 86.2% 100.0%
4934946 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.57 45.0 4.27e-01 93.8% 71.2%
5057754 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.57 46.0 3.90e-01 93.8% 54.3%
4059086 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.57 45.0 4.24e-01 93.8% 71.2%
3179915 101.1.2.124 alpha arrays › HTH › HTH › winged helix domain › Kin17_mid 0.57 45.0 3.65e-01 89.2% 49.2%
5003127 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.57 45.0 4.08e-01 89.2% 65.6%
3390936 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.56 45.0 3.96e-01 89.2% 60.0%
4942688 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.24e-01 93.8% 71.2%
5071512 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 3.99e-01 93.8% 60.0%
4345475 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.00e-01 93.8% 60.0%
4943550 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.25e-01 93.8% 71.2%
5037873 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.24e-01 93.8% 71.2%
5054618 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.23e-01 93.8% 71.2%
4929638 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 45.0 4.45e-01 93.8% 81.4%
3279756 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.56 43.0 3.45e-01 90.8% 40.0%
3597278 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.95e-01 89.2% 62.2%
4024063 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.56 46.0 4.06e-01 95.4% 62.1%
3482679 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.20e-01 93.8% 69.4%
4982942 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 44.0 3.88e-01 93.8% 57.0%
4102573 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 45.0 4.22e-01 93.8% 72.5%
5027202 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 44.0 4.18e-01 93.8% 71.2%
4127516 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 45.0 4.31e-01 93.8% 77.3%
4938005 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 44.0 4.15e-01 93.8% 71.2%
3831826 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 45.0 4.22e-01 93.8% 72.5%
4431518 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 44.0 3.89e-01 93.8% 60.0%
5027998 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.55 42.0 3.90e-01 87.7% 66.7%
3995114 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.55 42.0 3.61e-01 89.2% 50.9%
3597179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.25e-01 96.9% 81.2%
5035504 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.54 40.0 2.93e-01 80.0% 58.9%
4121027 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.54 38.0 2.66e-01 73.8% 61.3%
5029717 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.54 43.0 4.06e-01 87.7% 75.0%
4038458 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.54 45.0 3.99e-01 93.8% 63.2%
4240276 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.54 37.0 2.76e-01 73.8% 64.2%
3201844 101.1.2.45 alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP 0.54 42.0 3.67e-01 87.7% 60.0%
1138120 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.54 43.0 3.87e-01 93.8% 61.7%
4950453 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 40.0 3.56e-01 89.2% 52.4%
3612108 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.54 45.0 4.41e-01 93.8% 85.7%
None 0.54 40.0 2.88e-01 81.5% 34.3%
3595844 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 4.04e-01 93.8% 69.4%
5056162 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.53 42.0 3.96e-01 87.7% 72.5%
5027367 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.53 41.0 3.91e-01 87.7% 75.0%
4932760 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.53 45.0 4.30e-01 93.8% 81.3%
5017413 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.53 42.0 3.71e-01 87.7% 69.5%
3622943 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.53 45.0 4.28e-01 93.8% 82.7%
3510258 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.95e-01 89.2% 78.6%
5000291 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.53 41.0 3.79e-01 93.8% 63.3%
4981509 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.53 40.0 3.94e-01 89.2% 78.6%
3481439 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 4.00e-01 89.2% 84.6%
3928213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.45e-01 89.2% 61.7%
4983256 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.52 40.0 3.82e-01 87.7% 74.7%
5062631 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.27e-01 89.2% 47.0%
2532744 7084.1.1.2 few secondary structure elements › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › PF29706 0.51 36.0 3.33e-01 76.9% 68.8%
5032696 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.51 39.0 3.73e-01 87.7% 72.5%
5011663 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.50 44.0 2.82e-01 100.0% 95.2%