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CAKLQF020000001.1__CAH1069637.1__SAMEA5780031_00073__00070
Bact-VirCAKLQF020000001.1__CAH1069637.1__SAMEA5780031_00073__00070
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-162
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03746.22 best | LamB_YcsF | 235.6 | 9.10e-70 | 98.8% | 66.5% |
CATH (70)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5eA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.97 | 94.0 | 7.97e-01 | 99.4% | 68.0% |
| 1xw8A00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.96 | 87.0 | 7.49e-01 | 99.4% | 65.1% |
| 2nlyA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.83 | 71.0 | 6.38e-01 | 100.0% | 66.7% |
| 6m4eA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.72 | 67.0 | 4.60e-01 | 100.0% | 56.1% |
| 3kl0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.72 | 66.0 | 5.44e-01 | 98.8% | 65.4% |
| 1narA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.72 | 67.0 | 5.46e-01 | 100.0% | 65.1% |
| 1ur4A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.72 | 66.0 | 4.95e-01 | 100.0% | 62.2% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 65.0 | 4.83e-01 | 100.0% | 67.1% |
| 3zmrB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 65.0 | 4.93e-01 | 100.0% | 57.3% |
| 1nthA00 | 3.20.20.460 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB | 0.70 | 65.0 | 4.65e-01 | 100.0% | 37.2% |
| 5z3kB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 64.0 | 5.07e-01 | 100.0% | 62.5% |
| 3ndzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 64.0 | 4.96e-01 | 100.0% | 82.6% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 62.0 | 5.00e-01 | 98.1% | 87.9% |
| 1qwgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 63.0 | 5.43e-01 | 100.0% | 76.9% |
| 1ur1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 63.0 | 4.89e-01 | 100.0% | 66.2% |
| 1uhvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 61.0 | 4.78e-01 | 97.5% | 77.3% |
| 2bb0A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.68 | 63.0 | 5.09e-01 | 100.0% | 65.8% |
| 2q09A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.68 | 62.0 | 5.05e-01 | 99.4% | 65.9% |
| 3mbdA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 62.0 | 4.90e-01 | 100.0% | 58.6% |
| 1e5nA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 63.0 | 4.85e-01 | 100.0% | 66.5% |
| 3a9iA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 59.0 | 4.99e-01 | 100.0% | 57.2% |
| 1r85A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 61.0 | 4.66e-01 | 100.0% | 64.7% |
| 2wvsA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 61.0 | 4.81e-01 | 100.0% | 68.8% |
| 2iqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 61.0 | 4.92e-01 | 100.0% | 75.6% |
| 1knwA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.65 | 60.0 | 5.19e-01 | 100.0% | 80.8% |
| 1tqxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 60.0 | 5.36e-01 | 100.0% | 77.8% |
| 2hk0A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.64 | 59.0 | 4.84e-01 | 100.0% | 72.2% |
| 3itlD00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.64 | 58.0 | 4.32e-01 | 100.0% | 49.4% |
| 2zdsB00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.63 | 58.0 | 4.63e-01 | 100.0% | 72.4% |
| 3topA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 58.0 | 4.39e-01 | 99.4% | 81.5% |
| 2vyoA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.63 | 59.0 | 5.40e-01 | 98.8% | 94.7% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.63 | 58.0 | 4.88e-01 | 100.0% | 65.2% |
| 1w3iA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 59.0 | 4.76e-01 | 100.0% | 60.4% |
| 3qxbA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.63 | 57.0 | 4.70e-01 | 100.0% | 75.1% |
| 2wmiA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 56.0 | 4.34e-01 | 100.0% | 53.3% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 57.0 | 5.01e-01 | 100.0% | 79.0% |
| 4epkB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.62 | 56.0 | 4.45e-01 | 100.0% | 80.3% |
| 6r62A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.61 | 56.0 | 4.82e-01 | 100.0% | 78.6% |
| 3u0hA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 55.0 | 4.59e-01 | 100.0% | 72.4% |
| 3ecaA02 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 42.0 | 4.85e-01 | 95.7% | 100.0% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 45.0 | 4.01e-01 | 96.9% | 54.9% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 55.0 | 4.81e-01 | 100.0% | 93.4% |
| 5yrpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.59 | 50.0 | 4.47e-01 | 90.7% | 64.7% |
| 3qz6A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.59 | 55.0 | 4.68e-01 | 100.0% | 76.8% |
| 5jx5A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.59 | 53.0 | 4.30e-01 | 99.4% | 60.6% |
| 2r6oA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.59 | 53.0 | 4.57e-01 | 99.4% | 79.8% |
| 2yb1A01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 53.0 | 4.83e-01 | 98.8% | 89.1% |
| 2a5hA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 52.0 | 4.28e-01 | 96.3% | 55.2% |
| 3ro6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 53.0 | 4.65e-01 | 100.0% | 68.8% |
| 1xrtA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 52.0 | 4.52e-01 | 100.0% | 96.9% |
| 4ru1A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 4.27e-01 | 98.1% | 79.1% |
| 2basB01 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.57 | 51.0 | 4.62e-01 | 100.0% | 87.6% |
| 2ocdA02 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 41.0 | 4.65e-01 | 96.9% | 98.4% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.56 | 50.0 | 4.52e-01 | 100.0% | 86.1% |
| 1n0uA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 52.0 | 4.71e-01 | 99.4% | 92.9% |
| 2d6fA03 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 4.59e-01 | 96.9% | 93.5% |
| 1p1hB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 49.0 | 4.42e-01 | 96.9% | 96.9% |
| 1mkyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 5.05e-01 | 98.8% | 100.0% |
| 4zciA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 50.0 | 4.92e-01 | 100.0% | 97.1% |
| 6nbrC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 49.0 | 3.92e-01 | 98.1% | 74.8% |
| 3lf2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 48.0 | 4.20e-01 | 97.5% | 93.9% |
| 2aeuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 46.0 | 4.12e-01 | 96.3% | 69.1% |
| 1sazA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 41.0 | 3.86e-01 | 82.1% | 94.4% |
| 3kloA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 4.39e-01 | 83.3% | 94.4% |
| 1mkyA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 4.51e-01 | 97.5% | 92.9% |
| 2yweA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 4.66e-01 | 100.0% | 95.1% |
| 3eagA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 42.0 | 3.79e-01 | 96.9% | 61.5% |
| 2vlbC00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 45.0 | 3.99e-01 | 96.9% | 72.0% |
| 3bosB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 4.34e-01 | 93.8% | 92.6% |
| 3oesA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 4.37e-01 | 99.4% | 95.5% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4160870 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.99 | 97.0 | 8.09e-01 | 100.0% | 64.8% |
| 4285177 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.98 | 97.0 | 7.90e-01 | 100.0% | 62.3% |
| 4369630 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.98 | 96.0 | 7.92e-01 | 100.0% | 63.5% |
| 3731016 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.97 | 94.0 | 7.80e-01 | 100.0% | 64.0% |
| 4287266 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.97 | 94.0 | 7.82e-01 | 100.0% | 63.5% |
| 3697428 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.96 | 93.0 | 7.73e-01 | 100.0% | 64.0% |
| 4395868 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.95 | 93.0 | 7.74e-01 | 100.0% | 65.6% |
| 4675781 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 67.0 | 5.35e-01 | 100.0% | 69.0% |
| 8869 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.72 | 67.0 | 5.46e-01 | 100.0% | 65.1% |
| 1556921 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.71 | 65.0 | 4.80e-01 | 100.0% | 65.5% |
| 1289505 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.71 | 65.0 | 5.07e-01 | 99.4% | 67.1% |
| 4204245 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.70 | 65.0 | 4.60e-01 | 100.0% | 50.1% |
| 3957203 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.70 | 65.0 | 5.32e-01 | 100.0% | 82.6% |
| 4115593 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.69 | 65.0 | 5.07e-01 | 100.0% | 65.2% |
| 3188392 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.69 | 63.0 | 4.91e-01 | 100.0% | 63.2% |
| 5065527 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.68 | 61.0 | 4.95e-01 | 100.0% | 52.0% |
| 5023888 | 2002.1.1.100 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ComA | 0.68 | 63.0 | 5.40e-01 | 100.0% | 78.4% |
| 4031934 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.68 | 62.0 | 5.17e-01 | 99.4% | 62.9% |
| 4341888 | 2002.1.1.100 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ComA | 0.67 | 62.0 | 5.14e-01 | 100.0% | 68.9% |
| 3301514 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.67 | 62.0 | 5.16e-01 | 98.8% | 65.2% |
| 4997096 | 2002.1.1.137 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtmB | 0.67 | 60.0 | 4.35e-01 | 98.1% | 43.9% |
| 4017349 | 2002.1.1.176 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP_mutase | 0.67 | 62.0 | 5.20e-01 | 100.0% | 72.1% |
| 3731777 | 2002.1.1.149 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_67C,Glyco_hydro_67M | 0.67 | 61.0 | 4.20e-01 | 99.4% | 39.8% |
| None | — | 0.66 | 61.0 | 4.00e-01 | 100.0% | 44.6% | |
| 5011725 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.66 | 56.0 | 4.96e-01 | 100.0% | 63.0% |
| 4060921 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.66 | 61.0 | 4.86e-01 | 100.0% | 54.1% |
| 139864 | 2002.1.1.51 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha_L_fucos | 0.66 | 61.0 | 4.70e-01 | 100.0% | 65.1% |
| 4013691 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.66 | 60.0 | 4.17e-01 | 100.0% | 66.9% |
| 4079508 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.66 | 61.0 | 4.51e-01 | 100.0% | 57.1% |
| 4008577 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.65 | 56.0 | 4.73e-01 | 100.0% | 56.3% |
| 3444489 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.65 | 57.0 | 4.30e-01 | 95.1% | 50.9% |
| 5023694 | 2002.1.1.44 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase | 0.65 | 56.0 | 4.84e-01 | 99.4% | 59.6% |
| 9010 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.65 | 55.0 | 4.67e-01 | 100.0% | 56.8% |
| 4954805 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.65 | 54.0 | 4.83e-01 | 98.8% | 64.0% |
| 5035954 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.64 | 59.0 | 4.91e-01 | 100.0% | 72.7% |
| 3690990 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.64 | 58.0 | 3.99e-01 | 100.0% | 57.9% |
| 3260806 | 2002.1.1.114 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_85 | 0.64 | 59.0 | 4.47e-01 | 100.0% | 61.9% |
| 3199933 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.64 | 58.0 | 4.45e-01 | 99.4% | 65.0% |
| 4962917 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.63 | 42.0 | 4.41e-01 | 74.1% | 73.8% |
| 4971473 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 56.0 | 4.61e-01 | 96.9% | 99.3% |
| 4440706 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.62 | 46.0 | 5.00e-01 | 98.8% | 91.1% |
| 3957968 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.62 | 57.0 | 4.62e-01 | 99.4% | 70.8% |
| 4089616 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 56.0 | 4.55e-01 | 99.4% | 72.7% |
| 4289388 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.61 | 56.0 | 4.33e-01 | 100.0% | 52.9% |
| 3960536 | 7507.1.1.0 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain | 0.61 | 43.0 | 4.96e-01 | 98.8% | 100.0% |
| 3278799 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.60 | 32.0 | 3.50e-01 | 80.9% | 60.9% |
| 4926829 | 2002.1.1.79 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 | 0.60 | 55.0 | 4.96e-01 | 100.0% | 76.0% |
| 4632507 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.60 | 55.0 | 4.34e-01 | 100.0% | 54.3% |
| 3918999 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.60 | 55.0 | 4.24e-01 | 100.0% | 96.4% |
| 142707 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.59 | 55.0 | 4.68e-01 | 100.0% | 76.8% |
| 3638283 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.59 | 54.0 | 4.48e-01 | 100.0% | 72.1% |
| 3700337 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.59 | 48.0 | 4.30e-01 | 86.4% | 96.4% |
| 3197740 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.59 | 51.0 | 4.39e-01 | 95.7% | 86.5% |
| 4956909 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 54.0 | 4.38e-01 | 100.0% | 83.7% |
| 3997482 | 2002.1.1.290 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 | 0.58 | 52.0 | 4.99e-01 | 98.8% | 83.7% |
| 3088947 | 7507.1.1.1 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C | 0.58 | 42.0 | 4.72e-01 | 96.9% | 96.0% |
| 1487353 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.58 | 41.0 | 4.56e-01 | 98.1% | 92.9% |
| 4928140 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.57 | 46.0 | 3.93e-01 | 96.9% | 52.1% |
| 1811548 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 41.0 | 4.56e-01 | 98.8% | 94.4% |
| 4957276 | 7507.1.1.1 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C | 0.57 | 43.0 | 4.71e-01 | 97.5% | 97.7% |
| 4809977 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.57 | 31.0 | 3.53e-01 | 90.1% | 69.4% |
| 4652221 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.57 | 42.0 | 3.86e-01 | 96.3% | 58.1% |
| 5029149 | 2007.15.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › ThsB_TIR | 0.56 | 42.0 | 4.73e-01 | 99.4% | 100.0% |
| 4384861 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.56 | 51.0 | 4.00e-01 | 100.0% | 83.2% |
| 4185275 | 2004.1.1.474 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 | 0.55 | 51.0 | 4.74e-01 | 99.4% | 87.5% |
| 3926583 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.55 | 50.0 | 4.04e-01 | 100.0% | 88.4% |
| 4290247 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.55 | 49.0 | 4.34e-01 | 99.4% | 82.5% |
| 3585764 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 48.0 | 3.90e-01 | 97.5% | 63.5% |
| 3944693 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.54 | 36.0 | 3.65e-01 | 100.0% | 66.7% |
| 3708205 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 48.0 | 3.81e-01 | 98.1% | 63.3% |
| 4483491 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.53 | 49.0 | 4.60e-01 | 99.4% | 85.9% |
| 4966509 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.53 | 40.0 | 4.36e-01 | 99.4% | 94.1% |
| 4188766 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.53 | 40.0 | 3.80e-01 | 96.9% | 66.3% |
| 4992604 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 45.0 | 4.55e-01 | 97.5% | 94.4% |
| 4936994 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.53 | 48.0 | 4.18e-01 | 100.0% | 78.8% |
| 5013948 | 2004.1.1.95 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF257 | 0.52 | 47.0 | 4.42e-01 | 100.0% | 92.2% |
| 3634067 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 48.0 | 4.62e-01 | 100.0% | 87.6% |
| 3175546 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 47.0 | 4.50e-01 | 100.0% | 86.8% |
| 1140436 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.51 | 46.0 | 3.66e-01 | 100.0% | 92.2% |
D2
medium
residues 163-254
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03746.22 best | LamB_YcsF | 85.2 | 8.10e-24 | 85.9% | 32.6% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5eA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.91 | 73.0 | 5.17e-01 | 85.9% | 32.0% |
| 1xw8A00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.87 | 73.0 | 5.24e-01 | 97.8% | 34.9% |
| 2pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 42.0 | 4.04e-01 | 89.1% | 67.0% |
| 1q45A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 50.0 | 3.34e-01 | 98.9% | 72.1% |
| 1gytL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 46.0 | 3.70e-01 | 95.7% | 78.3% |
| 2ckwA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.53 | 39.0 | 3.72e-01 | 77.2% | 82.2% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.53 | 44.0 | 4.18e-01 | 95.7% | 77.6% |
| 2iafA00 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.53 | 37.0 | 3.21e-01 | 71.7% | 82.1% |
| 5yszA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 3.93e-01 | 95.7% | 63.3% |
| 1vjzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 44.0 | 3.14e-01 | 100.0% | 75.4% |
| 2f9zC00 | 3.30.1330.200 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.51 | 45.0 | 3.78e-01 | 95.7% | 89.6% |
| 1j1iA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 42.0 | 3.14e-01 | 93.5% | 86.8% |
| 7e76B01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.50 | 44.0 | 3.47e-01 | 96.7% | 58.1% |
| 2xe4A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 43.0 | 2.90e-01 | 96.7% | 62.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4160870 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.98 | 90.0 | 6.28e-01 | 95.7% | 35.2% |
| 4285177 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.96 | 91.0 | 6.24e-01 | 97.8% | 34.6% |
| 4369630 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.94 | 89.0 | 6.15e-01 | 97.8% | 35.3% |
| 4287266 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.94 | 88.0 | 6.16e-01 | 98.9% | 35.7% |
| 4395868 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.91 | 77.0 | 5.44e-01 | 90.2% | 32.8% |
| 3697428 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.85 | 75.0 | 5.32e-01 | 93.5% | 35.6% |
| 3731016 | 2002.3.1.4 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF | 0.84 | 73.0 | 5.18e-01 | 91.3% | 35.2% |
| 3315784 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.59 | 52.0 | 3.44e-01 | 100.0% | 69.6% |
| 1888684 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.56 | 51.0 | 3.36e-01 | 100.0% | 80.9% |
| 1411397 | 298.3.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › SDH_beta | 0.54 | 38.0 | 3.23e-01 | 73.9% | 75.0% |
| 3250925 | 2003.4.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes | 0.54 | 37.0 | 2.81e-01 | 70.7% | 84.2% |
| 3680183 | 2003.1.5.54 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 | 0.53 | 47.0 | 3.23e-01 | 100.0% | 63.3% |
| 3647372 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 43.0 | 4.03e-01 | 93.5% | 78.8% |