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CAKLQF020000001.1__CAH1069689.1__SAMEA5780031_00101__00096
Bact-VirCAKLQF020000001.1__CAH1069689.1__SAMEA5780031_00101__00096
Identity
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-114
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 51.0 | 5.48e-01 | 96.5% | 84.7% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 46.0 | 4.85e-01 | 95.6% | 76.7% |
| 2dgyA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 38.0 | 4.48e-01 | 93.8% | 81.0% |
| 2ja9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 40.0 | 4.61e-01 | 95.6% | 98.8% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 37.0 | 4.36e-01 | 94.7% | 97.4% |
| 1l1oF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 4.14e-01 | 94.7% | 69.5% |
| 3er0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 32.0 | 3.82e-01 | 94.7% | 90.4% |
| 2e8gA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 43.0 | 4.27e-01 | 100.0% | 81.9% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.51 | 29.0 | 3.63e-01 | 92.0% | 98.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981578 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 45.0 | 4.67e-01 | 96.5% | 60.0% |
| 3227979 | 2.1.1.126 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 | 0.78 | 47.0 | 5.24e-01 | 94.7% | 75.6% |
| 3230021 | 2.1.1.126 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 | 0.76 | 46.0 | 5.36e-01 | 94.7% | 85.0% |
| 3238435 | 2.1.1.126 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 | 0.75 | 43.0 | 5.19e-01 | 94.7% | 86.7% |
| 4946332 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 40.0 | 5.26e-01 | 92.0% | 100.0% |
| 3244265 | 2.1.1.317 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272, PF26704 | 0.73 | 44.0 | 3.95e-01 | 94.7% | 44.7% |
| 3522221 | 2.1.1.237 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 | 0.72 | 41.0 | 5.25e-01 | 94.7% | 96.9% |
| 5030021 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 41.0 | 4.98e-01 | 92.9% | 88.6% |
| 3385523 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 48.0 | 4.93e-01 | 94.7% | 72.7% |
| 3838219 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 47.0 | 5.28e-01 | 95.6% | 92.9% |
| 4958514 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 47.0 | 5.01e-01 | 94.7% | 81.0% |
| 3699623 | 2.1.1.43 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 | 0.68 | 40.0 | 4.17e-01 | 95.6% | 62.9% |
| 3963505 | 2.1.1.85 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB | 0.67 | 43.0 | 4.43e-01 | 92.9% | 68.6% |
| 4610349 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.66 | 44.0 | 5.15e-01 | 95.6% | 97.5% |
| 3597728 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 42.0 | 4.71e-01 | 95.6% | 86.7% |
| 3577388 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.63 | 42.0 | 4.74e-01 | 100.0% | 90.6% |
| 3563077 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.60 | 41.0 | 4.66e-01 | 94.7% | 94.1% |
| 5057050 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 51.0 | 4.94e-01 | 93.8% | 100.0% |
| 3591158 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 4.13e-01 | 97.3% | 69.6% |
| 5047985 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.57 | 43.0 | 4.42e-01 | 100.0% | 81.8% |
| 377 | 2.1.1.90 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ssDBP | 0.57 | 37.0 | 4.36e-01 | 94.7% | 97.4% |
| 5060547 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 41.0 | 4.42e-01 | 100.0% | 89.5% |
| 4038271 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.55 | 42.0 | 4.20e-01 | 99.1% | 79.1% |
| 4503208 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.52 | 41.0 | 4.07e-01 | 99.1% | 81.7% |
| 2774290 | 3953.1.1.2 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 | 0.52 | 35.0 | 3.64e-01 | 100.0% | 74.1% |
D2
high
residues 122-217
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 47.0 | 5.03e-01 | 74.0% | 81.2% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.68 | 50.0 | 4.25e-01 | 78.1% | 47.7% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.66 | 38.0 | 4.05e-01 | 74.0% | 64.6% |
| 6v9zA02 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.65 | 47.0 | 3.25e-01 | 76.0% | 22.8% |
| 4m52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 52.0 | 4.05e-01 | 100.0% | 56.3% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.56 | 37.0 | 3.08e-01 | 71.9% | 38.9% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.54 | 42.0 | 3.98e-01 | 100.0% | 68.8% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 46.0 | 3.95e-01 | 92.7% | 78.2% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 45.0 | 3.41e-01 | 99.0% | 98.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940867 | 632.22.1.67 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 | 0.75 | 54.0 | 5.50e-01 | 81.2% | 76.8% |
| 3270180 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.73 | 53.0 | 5.45e-01 | 78.1% | 80.0% |
| 3602948 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.71 | 49.0 | 5.44e-01 | 78.1% | 92.0% |
| 4016091 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 52.0 | 5.53e-01 | 83.3% | 92.9% |
| 4564044 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.68 | 49.0 | 3.63e-01 | 77.1% | 28.8% |
| 5056477 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.65 | 46.0 | 4.78e-01 | 76.0% | 77.8% |
| 3731914 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 53.0 | 4.67e-01 | 87.5% | 65.7% |
| 5021813 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.65 | 45.0 | 4.43e-01 | 100.0% | 65.7% |
| 5028691 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.65 | 47.0 | 4.49e-01 | 75.0% | 65.5% |
| 3981640 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.64 | 43.0 | 4.50e-01 | 75.0% | 74.4% |
| 4972598 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.61 | 44.0 | 3.72e-01 | 77.1% | 42.9% |
| 3699787 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.60 | 43.0 | 3.23e-01 | 74.0% | 69.2% |
| 4843090 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.60 | 45.0 | 4.31e-01 | 79.2% | 70.5% |
| 3245219 | 5001.1.1.59 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sri | 0.59 | 44.0 | 3.45e-01 | 80.2% | 73.0% |
| 3519643 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 42.0 | 3.87e-01 | 75.0% | 99.2% |
| 4984270 | 4.1.1.481 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_1st_1 | 0.58 | 40.0 | 3.96e-01 | 70.8% | 69.0% |
| 3711734 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.56 | 42.0 | 3.52e-01 | 78.1% | 82.4% |
| 5063047 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 40.0 | 3.96e-01 | 75.0% | 71.0% |
| 4256387 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.56 | 42.0 | 3.31e-01 | 89.6% | 36.2% |
| 3599499 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 43.0 | 3.64e-01 | 94.8% | 52.0% |
| 3608116 | 5086.1.1.177 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 | 0.55 | 42.0 | 3.65e-01 | 94.8% | 53.8% |
| 3596488 | 3737.1.1.0 ↗ | alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats | 0.54 | 46.0 | 4.16e-01 | 95.8% | 68.0% |
| 3424878 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.52 | 34.0 | 3.86e-01 | 72.9% | 92.8% |
| 3492519 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.51 | 41.0 | 3.94e-01 | 100.0% | 74.5% |
| 3282706 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.51 | 39.0 | 3.55e-01 | 82.3% | 95.4% |