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CAKLQF020000001.1__CAH1069749.1__SAMEA5780031_00131__00126

Bact-Vir

CAKLQF020000001.1__CAH1069749.1__SAMEA5780031_00131__00126

Identity

Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02677.21 best QueH 145.2 3.10e-42 100.0% 75.6%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k32B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.75 64.0 5.64e-01 100.0% 63.3%
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 67.0 5.65e-01 100.0% 65.9%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 67.0 5.76e-01 100.0% 77.3%
3vrhA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 66.0 5.03e-01 100.0% 47.3%
1ct9B02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 64.0 4.87e-01 100.0% 58.0%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 65.0 5.44e-01 100.0% 63.1%
1jflA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 50.0 5.52e-01 97.0% 97.2%
3we7A00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.63 58.0 4.62e-01 100.0% 75.3%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.62 45.0 4.48e-01 93.3% 71.3%
3wadB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 52.0 4.38e-01 93.3% 89.7%
2eq5B01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 45.0 4.77e-01 90.4% 89.6%
1uanA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.61 55.0 4.69e-01 100.0% 78.6%
2oq2D00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 55.0 4.52e-01 100.0% 56.1%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 46.0 4.15e-01 94.8% 59.1%
3vovA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 50.0 4.77e-01 91.1% 100.0%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 50.0 4.72e-01 94.1% 100.0%
1j33A02 3.40.50.10210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain 0.58 50.0 4.02e-01 94.8% 92.3%
3htvA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 52.0 4.88e-01 100.0% 87.5%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 49.0 4.82e-01 100.0% 86.5%
2ymbA00 3.30.870.30 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain 0.56 42.0 4.02e-01 90.4% 68.0%
4cd8A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 50.0 3.81e-01 98.5% 74.1%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 48.0 3.80e-01 98.5% 79.0%
5f5nA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 49.0 3.83e-01 100.0% 56.7%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.53 48.0 3.50e-01 100.0% 80.4%
1fy2A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 47.0 4.00e-01 100.0% 81.4%
3luyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 35.0 3.74e-01 93.3% 80.2%
2p4dA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 40.0 3.76e-01 97.0% 67.5%
3oa3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.74e-01 100.0% 81.4%
1dxyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 4.07e-01 92.6% 85.0%
6xigA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 44.0 3.41e-01 96.3% 78.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964073 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 1.00 98.0 8.04e-01 100.0% 64.7%
5070672 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.96 93.0 8.15e-01 100.0% 75.7%
5062902 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.96 92.0 7.90e-01 100.0% 68.7%
3388328 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.95 92.0 7.49e-01 100.0% 60.4%
3590138 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.94 91.0 7.25e-01 100.0% 58.7%
4981120 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.92 89.0 7.89e-01 100.0% 74.9%
4881378 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.92 89.0 7.90e-01 100.0% 75.3%
4970456 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.91 85.0 7.30e-01 100.0% 67.2%
5023395 2005.1.1.20 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ThiI 0.78 71.0 6.23e-01 100.0% 68.9%
4928125 2005.1.1.20 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ThiI 0.77 71.0 6.88e-01 98.5% 89.2%
4941917 2005.1.1.70 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF7411 0.76 68.0 5.90e-01 100.0% 64.5%
5058414 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.75 69.0 5.12e-01 100.0% 45.6%
4996081 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.74 68.0 5.05e-01 100.0% 45.8%
5044033 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.74 69.0 5.29e-01 100.0% 63.5%
3970680 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.72 56.0 5.80e-01 97.0% 86.4%
4928871 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.72 67.0 5.44e-01 100.0% 73.1%
3273951 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.71 67.0 5.25e-01 100.0% 55.1%
5032273 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.71 66.0 5.15e-01 100.0% 64.3%
4940516 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.71 66.0 5.29e-01 100.0% 69.0%
5037878 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.71 65.0 5.28e-01 100.0% 58.4%
4931887 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.71 66.0 5.04e-01 100.0% 60.3%
4983429 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 66.0 5.10e-01 100.0% 65.1%
5029050 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 5.15e-01 100.0% 69.1%
4980138 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 5.00e-01 100.0% 64.0%
4015947 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 4.62e-01 100.0% 57.1%
3463542 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 4.77e-01 100.0% 56.1%
4977476 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.70 65.0 5.06e-01 100.0% 66.5%
5001505 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 5.10e-01 100.0% 64.8%
5004100 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.70 65.0 5.10e-01 100.0% 67.2%
5046642 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.69 64.0 4.91e-01 100.0% 61.0%
4974666 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.69 64.0 4.95e-01 100.0% 61.8%
4081900 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.69 54.0 5.14e-01 97.8% 69.4%
3958329 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 63.0 5.23e-01 100.0% 60.4%
4928833 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.69 63.0 4.75e-01 100.0% 56.9%
4933987 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.68 63.0 4.92e-01 100.0% 65.8%
5065072 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.68 63.0 4.75e-01 100.0% 58.4%
None 0.68 62.0 5.42e-01 100.0% 71.0%
5019372 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.68 62.0 5.02e-01 100.0% 84.8%
4611002 2005.1.1.35 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Citrate_ly_lig 0.65 59.0 5.06e-01 100.0% 62.8%
10470 2007.1.5.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.64 48.0 5.15e-01 93.3% 92.9%
4427235 7512.1.1.16 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth 0.61 42.0 3.55e-01 99.3% 41.9%
3580315 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.59 53.0 4.96e-01 100.0% 83.5%
3471584 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.59 50.0 3.46e-01 93.3% 84.0%
3395584 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.58 53.0 5.03e-01 100.0% 89.4%
3412801 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.57 52.0 4.81e-01 100.0% 84.7%
4329821 2007.1.2.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LppC 0.56 50.0 4.70e-01 100.0% 93.5%
4938784 7539.1.1.1 a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.55 47.0 3.95e-01 93.3% 54.9%
4969357 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.55 47.0 4.53e-01 100.0% 81.9%
4997631 2003.1.1.123 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 0.54 45.0 4.49e-01 92.6% 87.9%
5078479 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.53 47.0 3.63e-01 99.3% 86.9%
4406265 2004.1.1.71 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.52 46.0 3.90e-01 100.0% 85.4%
4969772 2007.1.11.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.51 43.0 4.26e-01 96.3% 84.8%
2981329 149.1.1.0 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.51 37.0 2.73e-01 77.0% 43.1%
5056265 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 42.0 4.18e-01 91.1% 98.6%
2775295 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 43.0 4.01e-01 94.8% 95.3%
D2 medium residues 136-189
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02677.21 best QueH 31.1 3.50e-07 50.0% 14.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ixaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 46.0 3.28e-01 74.1% 92.9%
3do8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 41.0 3.15e-01 70.4% 85.2%
4xgqA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.59 42.0 3.14e-01 75.9% 57.6%
6kduA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 46.0 3.00e-01 88.9% 32.7%
1ce7A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 38.0 2.76e-01 72.2% 57.4%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 42.0 2.77e-01 81.5% 52.9%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.51 35.0 2.59e-01 74.1% 45.2%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.51 41.0 2.87e-01 100.0% 69.3%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.51 37.0 3.41e-01 79.6% 63.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4579411 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.99 87.0 5.53e-01 92.6% 23.3%
3964073 2005.1.1.22 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.97 86.0 5.44e-01 96.3% 23.3%
3907519 101.1.1.148 alpha arrays › HTH › HTH › Three-helical HTH › EPL1 0.55 40.0 2.97e-01 77.8% 52.0%