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CAKLQF020000001.1__CAH1069827.1__SAMEA5780031_00168__00162

Bact-Vir

CAKLQF020000001.1__CAH1069827.1__SAMEA5780031_00168__00162

Identity

Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-174
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12852.14 best Cupin_6 51.3 1.80e-13 79.5% 62.8%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 38.0 4.27e-01 83.9% 57.8%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 41.0 4.78e-01 82.0% 70.6%
4mv2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 40.0 4.68e-01 81.4% 69.2%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 41.0 4.76e-01 83.9% 70.2%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 41.0 4.94e-01 86.3% 78.2%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.75 64.0 6.56e-01 93.8% 94.2%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.73 64.0 6.54e-01 93.2% 98.7%
2p17A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 60.0 5.13e-01 87.0% 83.5%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 37.0 4.29e-01 81.4% 67.8%
1rc6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 60.0 5.13e-01 88.2% 78.1%
1ywkC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 57.0 4.84e-01 86.3% 82.2%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 58.0 4.98e-01 88.2% 79.2%
1e5rB01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.67 44.0 4.30e-01 95.0% 60.0%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 5.81e-01 93.8% 96.9%
3bu7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 55.0 4.21e-01 88.8% 70.7%
2xlgA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 46.0 4.06e-01 82.0% 84.7%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 4.04e-01 83.9% 76.9%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 4.27e-01 90.1% 88.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4087725 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.89 86.0 8.12e-01 100.0% 97.8%
3288347 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.88 82.0 8.09e-01 100.0% 92.3%
3975440 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.88 84.0 8.13e-01 100.0% 92.0%
4387276 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.83 78.0 7.44e-01 98.8% 94.6%
3967237 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.81 77.0 7.25e-01 100.0% 94.2%
1280306 10.12.1.13 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin 0.80 51.0 5.68e-01 70.8% 79.2%
4998200 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 41.0 4.98e-01 83.2% 74.5%
3946285 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.77 65.0 6.54e-01 93.2% 88.7%
4010366 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 70.0 6.84e-01 100.0% 90.9%
3280091 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 64.0 5.92e-01 93.8% 72.0%
3387563 10.12.1.64 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N 0.75 67.0 6.48e-01 94.4% 85.0%
3588800 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.75 66.0 6.03e-01 93.2% 78.5%
3971226 10.12.1.126 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF28724 0.74 67.0 6.49e-01 95.0% 90.3%
3988168 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.73 65.0 6.50e-01 96.3% 92.7%
3974066 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.73 64.0 6.65e-01 93.8% 99.3%
3973376 10.12.1.14 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.73 60.0 4.94e-01 87.0% 76.8%
3662636 10.12.1.14 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.73 60.0 4.83e-01 87.0% 72.3%
3945115 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.72 63.0 6.31e-01 93.2% 92.7%
3590244 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.72 62.0 6.16e-01 93.8% 87.1%
3276745 10.12.1.14 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.72 60.0 4.91e-01 87.0% 76.4%
4316810 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.72 57.0 6.03e-01 86.3% 92.4%
4555052 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.72 63.0 5.76e-01 93.2% 76.6%
3287507 10.12.1.14 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.70 59.0 4.74e-01 87.6% 70.5%
4536849 10.12.1.146 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 0.70 58.0 4.26e-01 87.0% 73.4%
3944685 10.12.1.71 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C_2 0.70 59.0 5.12e-01 87.6% 84.1%
3969117 10.12.1.104 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.70 61.0 5.95e-01 96.3% 85.7%
4271412 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.70 61.0 6.12e-01 93.8% 93.9%
3982901 10.12.1.71 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C_2 0.70 58.0 4.94e-01 87.0% 76.4%
4335239 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.69 59.0 4.79e-01 88.8% 80.4%
3964888 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 60.0 5.46e-01 94.4% 78.6%
3729687 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 57.0 4.58e-01 87.6% 78.3%
4228039 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.68 57.0 4.14e-01 89.4% 74.7%
2565054 10.12.1.65 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ToxT_N 0.67 59.0 5.88e-01 94.4% 93.3%
3977356 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 52.0 5.12e-01 87.0% 90.3%
4934196 10.12.1.63 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.61 51.0 4.30e-01 86.3% 80.0%
374639 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 40.0 4.24e-01 90.1% 87.4%
None 0.50 45.0 4.06e-01 93.8% 79.6%
D2 medium residues 183-294
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12833.14 best HTH_18 79.4 2.80e-22 71.4% 98.8%
PF00165.30 HTH_AraC 33.8 4.00e-08 35.7% 83.3%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.96 88.0 8.93e-01 95.5% 96.4%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.92 79.0 8.36e-01 95.5% 100.0%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 80.0 8.06e-01 99.1% 98.2%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 77.0 7.96e-01 97.3% 100.0%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 76.0 7.82e-01 98.2% 100.0%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 74.0 7.50e-01 98.2% 99.1%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 72.0 7.40e-01 97.3% 100.0%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 39.0 5.03e-01 79.5% 92.1%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 37.0 4.98e-01 83.9% 94.9%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.72 40.0 4.33e-01 77.7% 63.8%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.27e-01 72.3% 89.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 36.0 4.37e-01 94.6% 78.6%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.64 35.0 3.58e-01 75.9% 53.2%
4ch7A01 1.10.10.2890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 42.0 4.23e-01 83.9% 64.7%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 5.01e-01 75.0% 93.3%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 49.0 4.13e-01 91.1% 67.5%
3ljlA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 51.0 4.73e-01 99.1% 85.9%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 50.0 4.28e-01 100.0% 69.1%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 50.0 4.18e-01 100.0% 63.5%
3f1bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 49.0 4.25e-01 100.0% 70.5%
3anpB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 48.0 4.08e-01 97.3% 66.0%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 49.0 4.25e-01 100.0% 74.4%
3bcgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 47.0 3.93e-01 100.0% 66.7%
2uxuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.91e-01 100.0% 69.8%
3ni7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 46.0 4.01e-01 98.2% 75.3%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 3.81e-01 97.3% 69.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009674 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.97 88.0 8.94e-01 93.8% 95.5%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 88.0 8.91e-01 93.8% 99.1%
4004617 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 89.0 8.87e-01 95.5% 93.9%
3981026 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.95 86.0 8.94e-01 96.4% 100.0%
3964894 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 82.0 8.66e-01 91.1% 100.0%
3945925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 81.0 8.63e-01 90.2% 100.0%
3976759 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 81.0 8.62e-01 89.3% 100.0%
3944639 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 84.0 8.76e-01 93.8% 100.0%
None 0.94 81.0 8.60e-01 89.3% 100.0%
3973662 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 81.0 8.53e-01 90.2% 100.0%
3976262 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.93 86.0 8.60e-01 97.3% 94.8%
None 0.93 80.0 8.43e-01 89.3% 100.0%
4497103 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 83.0 8.57e-01 93.8% 100.0%
3283340 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 83.0 8.41e-01 93.8% 96.4%
3972891 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 79.0 8.34e-01 92.0% 100.0%
4193366 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 84.0 8.48e-01 95.5% 96.4%
4030908 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 51.0 6.30e-01 100.0% 84.0%
4123831 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 83.0 8.09e-01 96.4% 88.3%
3945505 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 83.0 8.15e-01 94.6% 89.1%
3968254 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 74.0 8.03e-01 85.7% 100.0%
3972910 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 52.0 6.93e-01 93.8% 100.0%
4590066 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 84.0 8.37e-01 96.4% 95.6%
3956897 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 81.0 8.37e-01 95.5% 100.0%
4009138 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 48.0 6.64e-01 89.3% 100.0%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 79.0 8.11e-01 94.6% 97.2%
3949057 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 79.0 8.17e-01 92.9% 100.0%
4010677 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 76.0 8.00e-01 93.8% 100.0%
4539758 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 79.0 7.71e-01 96.4% 87.5%
3513766 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 80.0 7.73e-01 98.2% 86.4%
4107953 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 79.0 7.71e-01 95.5% 91.7%
3964790 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 75.0 7.75e-01 96.4% 96.2%
3984092 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.86 53.0 6.78e-01 94.6% 100.0%
4007664 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.86 53.0 6.73e-01 94.6% 100.0%
4374806 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 78.0 6.51e-01 100.0% 94.6%
3966470 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 77.0 7.19e-01 98.2% 81.5%