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CAKLQF020000001.1__CAH1070069.1__SAMEA5780031_00281__00274

Bact-Vir

CAKLQF020000001.1__CAH1070069.1__SAMEA5780031_00281__00274

Identity

Kingdom:
phage

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-216
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16957.12 best Mal_decarbox_Al 291.9 1.10e-86 100.0% 31.9%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mprB01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 1.00 99.0 9.16e-01 100.0% 84.8%
2ahuA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.88 85.0 7.18e-01 100.0% 86.8%
2nrbA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.85 82.0 7.39e-01 100.0% 97.9%
1poiA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.85 82.0 7.01e-01 100.0% 69.3%
1xr4B01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.84 81.0 7.25e-01 100.0% 76.7%
1k6dB00 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.84 80.0 7.43e-01 100.0% 96.3%
3gk7A01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.81 73.0 7.24e-01 100.0% 90.8%
8dh7A01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.77 73.0 6.70e-01 100.0% 92.5%
1m0sA01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 54.0 5.90e-01 100.0% 89.0%
5enzA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 46.0 4.81e-01 93.3% 76.4%
2vycA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 43.0 4.81e-01 93.9% 82.0%
1q0qA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 53.0 5.74e-01 94.4% 100.0%
4ldaB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 39.0 4.56e-01 93.3% 81.1%
3h5iA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 39.0 4.51e-01 93.9% 80.8%
2xdqB04 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.65 36.0 4.69e-01 79.9% 100.0%
4kp7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 53.0 5.68e-01 94.4% 100.0%
3cnbA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 39.0 4.55e-01 92.2% 83.9%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 38.0 3.68e-01 93.9% 49.5%
1jqbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 48.0 5.44e-01 98.9% 100.0%
2ahuA02 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.65 61.0 5.42e-01 100.0% 73.1%
5djsA02 3.40.50.11380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 46.0 4.52e-01 93.9% 68.1%
3quaA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 56.0 5.61e-01 93.3% 93.9%
4q7eA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 37.0 4.35e-01 93.3% 81.6%
5x5jA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 37.0 4.38e-01 93.9% 84.7%
1a2oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 38.0 4.34e-01 96.1% 79.7%
1ws6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 48.0 4.89e-01 87.7% 83.0%
3eodA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 36.0 4.32e-01 78.8% 86.1%
1t3gB00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.61 43.0 4.62e-01 92.7% 84.8%
2j3hA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 47.0 4.72e-01 100.0% 81.9%
2csuA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.59 37.0 4.12e-01 93.9% 78.0%
4azsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 4.61e-01 87.7% 81.7%
2y0eB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 4.36e-01 100.0% 68.0%
3lqkA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.59 52.0 5.05e-01 96.1% 86.6%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 43.0 4.64e-01 100.0% 89.5%
1hkuA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 4.61e-01 85.5% 96.4%
1cp2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 4.32e-01 92.7% 77.3%
1mjhB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 4.84e-01 82.7% 100.0%
6ptzA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 4.54e-01 82.7% 100.0%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 49.0 4.73e-01 100.0% 84.6%
3ia7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 49.0 4.47e-01 93.9% 81.1%
1qp8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 4.56e-01 86.0% 97.8%
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 48.0 4.38e-01 97.8% 71.3%
4g2nA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 45.0 4.51e-01 86.0% 98.9%
3iupA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 4.32e-01 99.4% 84.0%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 36.0 3.70e-01 70.4% 82.7%
3p6lA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 40.0 3.50e-01 79.9% 85.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2101396 2003.1.7.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Mal_decarbox_Al 1.00 98.0 9.02e-01 100.0% 82.5%
4329334 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.89 86.0 7.22e-01 100.0% 86.2%
4030764 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.88 84.0 7.16e-01 100.0% 88.1%
4121224 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.88 84.0 7.16e-01 100.0% 87.4%
4018823 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.88 85.0 7.12e-01 100.0% 84.4%
3409312 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.86 83.0 7.25e-01 100.0% 91.2%
4119234 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.86 82.0 7.62e-01 100.0% 96.3%
161556 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.86 82.0 7.33e-01 100.0% 76.1%
3164344 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.85 82.0 7.68e-01 100.0% 100.0%
4570250 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.85 82.0 5.69e-01 100.0% 35.8%
4981231 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.84 80.0 7.12e-01 100.0% 75.0%
137538 2003.1.7.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hydro 0.81 73.0 7.24e-01 100.0% 90.8%
3479134 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.80 73.0 7.15e-01 100.0% 89.5%
3800748 2003.1.7.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hydro 0.80 72.0 6.74e-01 100.0% 78.6%
3935057 2003.1.7.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hydro 0.79 71.0 7.08e-01 100.0% 91.4%
2877613 2003.1.7.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hydro 0.77 73.0 6.58e-01 100.0% 88.6%
5005992 2003.1.7.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hydro 0.76 72.0 7.02e-01 100.0% 93.7%
4390520 2003.1.7.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Rib_5-P_isom_A 0.74 56.0 5.93e-01 100.0% 88.0%
1300748 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.70 59.0 5.55e-01 100.0% 74.3%
4396120 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.67 55.0 5.61e-01 94.4% 89.4%
5016786 2003.1.1.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.66 43.0 4.94e-01 87.7% 89.2%
5071384 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.66 59.0 5.23e-01 100.0% 68.6%
4452496 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.65 52.0 5.21e-01 94.4% 81.6%
4135086 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.65 52.0 5.26e-01 94.4% 83.9%
5035729 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.65 52.0 5.20e-01 100.0% 80.3%
3294106 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.65 39.0 4.39e-01 93.9% 77.8%
2476521 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 39.0 4.47e-01 96.1% 80.9%
3672808 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 38.0 4.45e-01 93.9% 82.4%
5065824 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.64 59.0 5.28e-01 100.0% 71.4%
5018240 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 39.0 4.15e-01 97.8% 67.7%
3960429 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.64 54.0 5.30e-01 100.0% 83.7%
4927639 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 39.0 4.23e-01 93.9% 73.1%
3954912 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.63 53.0 5.24e-01 100.0% 83.7%
3950420 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.63 53.0 5.25e-01 100.0% 83.7%
3268153 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.63 39.0 4.18e-01 93.9% 70.3%
4170642 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.63 51.0 5.11e-01 94.4% 84.4%
4942313 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.63 52.0 5.21e-01 100.0% 85.3%
5028988 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.63 51.0 5.13e-01 100.0% 83.2%
3965755 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.62 53.0 5.17e-01 100.0% 82.9%
4571275 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.62 53.0 5.19e-01 100.0% 84.7%
3729634 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 44.0 3.90e-01 100.0% 50.4%
5011641 7564.1.1.1 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein 0.62 49.0 4.98e-01 96.1% 83.3%
3838389 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.61 51.0 5.27e-01 100.0% 93.9%
3251565 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.61 38.0 4.31e-01 93.9% 80.7%
3999796 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.61 53.0 5.17e-01 100.0% 84.5%
None 0.61 48.0 3.75e-01 100.0% 38.2%
4521634 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.61 31.0 3.71e-01 79.9% 70.8%
3782971 2003.1.1.48 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.60 53.0 4.74e-01 100.0% 67.2%
3315815 7512.1.1.54 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 0.60 56.0 5.05e-01 100.0% 90.3%
1229035 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.59 48.0 4.54e-01 87.2% 75.1%
5023090 7570.1.1.0 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.59 42.0 4.76e-01 79.9% 97.8%
None 0.58 48.0 4.41e-01 88.3% 92.5%
3494508 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.57 53.0 4.71e-01 100.0% 71.2%
4934795 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 47.0 4.12e-01 88.3% 90.2%
5062001 7501.1.1.2 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C 0.57 51.0 4.63e-01 98.3% 80.4%
3717600 102.1.1.6 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 0.55 47.0 4.22e-01 100.0% 64.3%
5012028 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 48.0 3.99e-01 93.3% 71.0%
2051204 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.54 41.0 4.09e-01 99.4% 75.3%
5083477 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.53 48.0 4.03e-01 98.9% 71.9%
3336301 2003.1.1.37 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 2-Hacid_dh_C 0.53 37.0 3.56e-01 73.7% 61.4%
4951427 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.52 30.0 3.58e-01 91.1% 83.3%
3600053 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 47.0 4.32e-01 100.0% 75.7%
4106259 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.52 47.0 3.65e-01 100.0% 83.5%
5056789 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 46.0 3.87e-01 99.4% 74.5%
3807096 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.51 44.0 3.63e-01 94.4% 86.7%
D2 medium residues 224-238_255-354_529-555
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF16957.12 best Mal_decarbox_Al 214.7 2.70e-63 81.7% 24.0%
PF16957.12 Mal_decarbox_Al 32.7 3.70e-08 20.4% 5.1%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xr4A02 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.73 56.0 4.48e-01 80.3% 46.5%
2vefB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.61 42.0 3.45e-01 70.4% 85.5%
1zoiA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 44.0 3.57e-01 73.9% 96.0%
4kp7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 41.0 4.05e-01 70.4% 63.2%
3up8A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.61 42.0 3.38e-01 70.4% 75.8%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 43.0 3.49e-01 73.9% 92.6%
5z5cA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 39.0 4.30e-01 78.2% 86.1%
2yw3E00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 40.0 3.59e-01 70.4% 83.0%
6xh5B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 39.0 3.57e-01 70.4% 78.2%
3ga7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 3.40e-01 81.0% 97.7%
2x5xA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 3.24e-01 79.6% 80.4%
3tu3B02 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.55 40.0 3.26e-01 75.4% 93.4%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 39.0 3.74e-01 72.5% 75.0%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 39.0 3.71e-01 76.1% 82.1%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 37.0 3.54e-01 70.4% 76.1%
7caqA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.53 38.0 3.39e-01 73.2% 93.5%
1j4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 36.0 3.75e-01 70.4% 88.9%
1vk9A00 3.40.140.30 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Hypothetical protein TM1506 0.52 38.0 3.81e-01 85.2% 73.5%
1t57A00 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.52 37.0 3.41e-01 72.5% 71.4%
8aw3201 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 37.0 3.63e-01 73.9% 82.1%
8acrA01 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 36.0 3.54e-01 70.4% 69.1%
2g84A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 36.0 3.45e-01 73.9% 72.8%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.43e-01 83.1% 83.0%
2fexA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 36.0 3.33e-01 72.5% 69.5%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.51 43.0 3.69e-01 93.7% 88.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976504 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.75 58.0 4.60e-01 81.0% 47.1%
4981232 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.74 54.0 4.48e-01 74.6% 51.1%
4570250 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.73 57.0 3.80e-01 81.0% 57.4%
5033806 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.73 54.0 4.31e-01 76.1% 46.2%
4424452 7579.1.1.19 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Acyl_transf_2 0.64 46.0 3.55e-01 73.2% 79.4%
4012852 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 43.0 3.40e-01 73.2% 91.3%
4974554 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 42.0 3.32e-01 72.5% 58.6%
5055473 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 42.0 3.37e-01 72.5% 61.8%
None 0.59 41.0 3.62e-01 70.4% 81.0%
5026361 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.57 40.0 3.50e-01 70.4% 89.8%
4062256 2003.1.7.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Glucosamine_iso 0.57 41.0 3.39e-01 73.9% 52.9%
4235755 2002.1.1.129 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NanE 0.56 39.0 3.40e-01 70.4% 89.1%
5058250 7579.1.1.20 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT 0.55 41.0 3.66e-01 78.9% 98.6%
4959962 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 39.0 3.42e-01 73.2% 87.7%
3876722 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.53 39.0 2.85e-01 76.1% 57.8%
5062913 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.53 37.0 3.11e-01 70.4% 82.5%
4881878 2492.1.1.16 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 0.53 38.0 4.19e-01 89.4% 94.6%
138238 2003.1.7.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Glucosamine_iso 0.52 37.0 3.22e-01 74.6% 76.6%
3290398 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 39.0 3.83e-01 81.0% 91.3%
3967525 2003.1.7.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Glucosamine_iso 0.51 37.0 3.13e-01 73.9% 74.4%
3350383 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.51 41.0 3.26e-01 84.5% 85.2%
3289549 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 39.0 3.76e-01 81.0% 90.0%
4525128 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.50 39.0 2.73e-01 83.1% 46.6%
D3 medium residues 239-254_355-528
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16957.12 best Mal_decarbox_Al 272.8 6.90e-81 92.1% 31.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oasA03 3.40.1080.20 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Acetyl-CoA hydrolase/transferase C-terminal domain 0.81 51.0 5.84e-01 79.5% 82.6%
1xr4A02 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.61 51.0 4.42e-01 85.3% 84.4%
3cdkB00 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.56 50.0 4.82e-01 94.2% 97.6%
1poiB00 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.54 51.0 4.57e-01 100.0% 98.1%
1sxjA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 35.0 3.60e-01 98.4% 67.0%
6i3mE02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.52 43.0 4.24e-01 86.3% 99.0%
4zemA02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.51 41.0 4.40e-01 83.7% 100.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2409660 2003.1.7.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Mal_decarbox_Al 0.99 98.0 7.75e-01 100.0% 87.1%
3618190 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.82 51.0 5.46e-01 79.5% 70.6%
3479127 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.69 58.0 5.25e-01 86.8% 93.9%
5006995 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.68 62.0 5.37e-01 95.3% 98.2%
4132295 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.66 56.0 4.77e-01 86.8% 81.8%
3635138 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.66 56.0 4.74e-01 86.8% 81.0%
3625301 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.66 59.0 5.24e-01 92.1% 95.7%
3972003 2003.1.7.11 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C 0.62 59.0 4.71e-01 100.0% 92.8%
3976504 2003.1.7.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CitF 0.61 51.0 4.40e-01 85.3% 82.8%
3971613 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.56 53.0 4.81e-01 100.0% 92.8%
5052208 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.56 53.0 4.59e-01 100.0% 83.9%
1189810 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.55 52.0 4.91e-01 100.0% 94.6%
5074595 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.55 52.0 4.61e-01 100.0% 97.7%
9430 2003.1.7.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.54 51.0 4.57e-01 100.0% 98.1%
3701782 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.52 43.0 4.26e-01 86.8% 97.1%
3600291 2003.1.7.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.52 43.0 4.24e-01 86.8% 98.0%