Back to structures

CAKLQF020000001.1__CAH1070085.1__SAMEA5780031_00289__00282

Bact-Vir

CAKLQF020000001.1__CAH1070085.1__SAMEA5780031_00289__00282

Identity

Kingdom:
phage

Quality

89.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-81
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03818.19 best MadM 92.7 3.50e-26 95.1% 30.1%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 48.0 4.58e-01 87.7% 59.6%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 34.0 3.70e-01 71.6% 58.8%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.64 30.0 3.58e-01 76.5% 66.1%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.61 37.0 4.25e-01 86.4% 82.0%
7dluA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 43.0 3.94e-01 79.0% 59.0%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 43.0 4.04e-01 80.2% 80.6%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 45.0 4.19e-01 86.4% 77.7%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 45.0 3.38e-01 86.4% 76.6%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.56 43.0 3.24e-01 81.5% 54.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 39.0 3.93e-01 85.2% 70.6%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 46.0 3.91e-01 96.3% 83.7%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 43.0 4.46e-01 86.4% 96.1%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.53 45.0 4.17e-01 92.6% 89.1%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 41.0 3.35e-01 84.0% 68.4%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.93e-01 72.8% 95.9%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 43.0 3.91e-01 92.6% 94.7%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.52 33.0 3.45e-01 87.7% 68.4%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.52 38.0 3.82e-01 79.0% 77.8%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 40.0 3.82e-01 82.7% 71.7%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.51 42.0 3.53e-01 91.4% 94.3%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.51 42.0 3.59e-01 91.4% 78.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963018 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.67 47.0 4.22e-01 71.6% 54.1%
4945610 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.65 54.0 5.09e-01 91.4% 87.0%
4149728 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.65 49.0 4.94e-01 79.0% 90.0%
3450038 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 52.0 3.89e-01 91.4% 43.3%
5054956 7064.1.1.0 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.62 52.0 4.54e-01 91.4% 61.7%
3661215 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 49.0 3.85e-01 91.4% 48.6%
4646569 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.60 46.0 4.37e-01 90.1% 68.4%
3664723 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.60 47.0 3.66e-01 84.0% 60.0%
4938927 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.59 44.0 4.25e-01 80.2% 88.4%
3695642 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.58 46.0 4.26e-01 87.7% 82.9%
3590772 6152.1.1.1 alpha arrays › Helical domain in Orf11 › Helical domain in Orf11 › Helical domain in Orf11 › NAT_N 0.58 44.0 4.11e-01 87.7% 66.0%
3494404 1045.1.1.0 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.57 39.0 3.78e-01 72.8% 61.1%
4976125 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.57 42.0 3.93e-01 79.0% 72.4%
134276 3831.1.1.1 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.57 45.0 4.19e-01 86.4% 77.7%
1036939 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.57 43.0 4.18e-01 82.7% 91.2%
5064592 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 45.0 3.82e-01 92.6% 52.7%
3784217 5054.1.1.12 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › NCA2 0.56 42.0 3.38e-01 80.2% 57.4%
4978846 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.55 44.0 3.88e-01 85.2% 89.5%
4464616 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.54 39.0 3.77e-01 81.5% 67.8%
5058510 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 42.0 3.85e-01 88.9% 63.6%
4685 192.16.1.1 alpha bundles › Long alpha-hairpin › SPy1572-like › SPy1572-like › DUF1912 0.53 37.0 3.93e-01 72.8% 95.9%
5014572 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.53 43.0 3.46e-01 91.4% 70.3%
5021023 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.53 43.0 3.21e-01 100.0% 31.6%
3591222 604.1.1.198 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › BAG 0.52 38.0 3.65e-01 90.1% 66.3%
4506363 5058.1.1.73 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › PF27423 0.52 42.0 4.15e-01 87.7% 85.9%
3444544 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.52 42.0 3.33e-01 86.4% 87.1%
3275304 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.51 38.0 3.41e-01 84.0% 84.8%
4937297 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.50 39.0 3.62e-01 84.0% 66.0%
4579379 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 38.0 3.08e-01 82.7% 53.6%
D2 high residues 84-253
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03818.19 best MadM 279.6 3.20e-83 100.0% 67.9%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zuxA00 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.72 48.0 3.88e-01 100.0% 36.7%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 31.0 3.52e-01 81.8% 63.3%
1u61A00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.58 34.0 3.83e-01 75.9% 74.8%
3f0cA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 34.0 3.64e-01 82.9% 65.3%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 32.0 3.58e-01 84.1% 65.4%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.58 46.0 4.09e-01 85.3% 85.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 33.0 3.26e-01 74.7% 54.8%
2np3A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 30.0 3.24e-01 83.5% 61.3%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 32.0 3.65e-01 80.6% 76.9%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 30.0 3.48e-01 78.8% 75.4%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 37.0 3.47e-01 70.6% 71.1%
4udsA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 36.0 3.57e-01 70.6% 88.9%
3kttB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 43.0 3.76e-01 88.2% 84.3%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 30.0 3.36e-01 97.6% 71.0%
5xn6D00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 39.0 3.44e-01 81.8% 81.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589618 3236.1.1.12 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698 0.81 76.0 6.00e-01 100.0% 53.3%
4286776 3236.1.1.12 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698 0.80 74.0 5.88e-01 98.8% 53.3%
3789219 3236.2.1.9 alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › LrgB 0.80 75.0 5.61e-01 100.0% 44.4%
4547786 3236.1.1.12 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698 0.79 74.0 5.82e-01 100.0% 52.2%
3313984 3236.2.1.9 alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › LrgB 0.78 74.0 5.38e-01 100.0% 93.6%
3326984 3236.1.1.8 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › LrgB 0.78 73.0 5.45e-01 100.0% 93.3%
4551219 3236.2.1.6 alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › OAD_beta 0.78 73.0 5.63e-01 100.0% 81.4%
3283067 3236.1.1.12 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698 0.78 72.0 5.87e-01 98.8% 57.7%
3944373 101.35.1.20 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › LrgB 0.75 68.0 6.16e-01 99.4% 72.4%
3416905 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.73 49.0 4.07e-01 100.0% 39.7%
3602461 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.73 49.0 3.67e-01 96.5% 29.6%
4947428 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.73 48.0 3.86e-01 100.0% 34.8%
4636404 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.73 49.0 3.59e-01 99.4% 27.1%
5027313 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.72 48.0 3.64e-01 99.4% 29.5%
3480903 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.72 47.0 3.88e-01 100.0% 38.0%
3311377 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.71 47.0 3.79e-01 100.0% 35.6%
3479281 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.71 47.0 3.80e-01 100.0% 36.5%
4218048 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.66 46.0 3.93e-01 100.0% 44.9%
5083432 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.66 47.0 4.01e-01 98.8% 46.4%
5025435 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.64 33.0 3.12e-01 83.5% 39.5%
5039989 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 34.0 3.44e-01 88.8% 57.0%
5077137 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.57 38.0 4.13e-01 88.2% 79.3%
4980357 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.57 44.0 3.39e-01 80.6% 83.6%
4945341 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 36.0 3.54e-01 95.9% 57.8%
3283341 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.56 32.0 3.62e-01 83.5% 70.5%
3972623 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 46.0 3.99e-01 88.8% 92.4%
3181568 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.54 42.0 3.18e-01 82.9% 67.5%
4628636 1075.1.1.4 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.53 40.0 3.50e-01 79.4% 77.3%
5003886 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.52 47.0 3.83e-01 100.0% 99.4%
5007941 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.51 47.0 3.73e-01 100.0% 98.0%
4273625 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.51 37.0 3.26e-01 91.8% 50.4%
3783307 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.51 46.0 3.68e-01 98.8% 97.4%
2642640 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.50 37.0 3.95e-01 75.3% 91.9%
3945701 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 38.0 3.49e-01 99.4% 61.5%
4989020 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.50 38.0 3.38e-01 78.2% 72.1%
5012046 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.50 47.0 3.55e-01 100.0% 91.8%