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CAKLQF020000002.1__CAH1073105.1__SAMEA5780031_00370__00007
Bact-VirCAKLQF020000002.1__CAH1073105.1__SAMEA5780031_00370__00007
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1416-1497
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04357.20 best | TamB | 37.7 | 2.20e-09 | 98.8% | 23.6% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.84 | 65.0 | 5.13e-01 | 81.7% | 58.0% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.76 | 58.0 | 4.82e-01 | 80.5% | 48.6% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.73 | 57.0 | 4.56e-01 | 81.7% | 62.1% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.73 | 57.0 | 4.65e-01 | 82.9% | 73.0% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.72 | 51.0 | 4.68e-01 | 73.2% | 62.5% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.72 | 52.0 | 4.20e-01 | 75.6% | 50.7% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.69 | 59.0 | 4.76e-01 | 92.7% | 52.3% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.68 | 53.0 | 4.09e-01 | 82.9% | 40.1% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.66 | 56.0 | 4.32e-01 | 95.1% | 42.4% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.65 | 56.0 | 4.74e-01 | 93.9% | 76.7% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.65 | 55.0 | 3.86e-01 | 92.7% | 99.2% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.65 | 48.0 | 3.65e-01 | 78.0% | 39.7% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.64 | 50.0 | 3.99e-01 | 84.1% | 83.1% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.64 | 58.0 | 4.48e-01 | 100.0% | 47.5% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.64 | 49.0 | 4.96e-01 | 81.7% | 84.8% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 44.0 | 4.45e-01 | 74.4% | 72.6% |
| 1s2kA00 | 2.60.120.700 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 | 0.62 | 46.0 | 3.39e-01 | 76.8% | 54.3% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 44.0 | 4.35e-01 | 80.5% | 70.0% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.61 | 42.0 | 4.54e-01 | 72.0% | 85.7% |
| 2r5vB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 51.0 | 3.99e-01 | 96.3% | 77.9% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 42.0 | 4.03e-01 | 73.2% | 78.1% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.57 | 46.0 | 3.73e-01 | 89.0% | 79.3% |
| 2a5zA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 3.56e-01 | 100.0% | 65.7% |
| 5jowA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.44e-01 | 90.2% | 55.0% |
| 4jrnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 42.0 | 3.61e-01 | 85.4% | 95.0% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.54 | 47.0 | 4.40e-01 | 97.6% | 77.1% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 48.0 | 3.49e-01 | 97.6% | 88.8% |
| 2bujB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 39.0 | 3.80e-01 | 76.8% | 86.2% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 41.0 | 2.88e-01 | 84.1% | 90.6% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 43.0 | 3.06e-01 | 86.6% | 35.1% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.53 | 40.0 | 3.70e-01 | 92.7% | 62.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3827592 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.82 | 63.0 | 5.00e-01 | 81.7% | 48.7% |
| 3356246 | 5084.5.1.45 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF28482 | 0.74 | 66.0 | 4.77e-01 | 98.8% | 36.9% |
| 3642585 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.72 | 52.0 | 4.45e-01 | 75.6% | 69.2% |
| 3279724 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.71 | 53.0 | 4.48e-01 | 97.6% | 49.2% |
| 4030498 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.69 | 58.0 | 4.66e-01 | 89.0% | 53.3% |
| 5051273 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.68 | 57.0 | 4.05e-01 | 91.5% | 94.4% |
| 4385470 | 5084.5.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 | 0.67 | 61.0 | 4.10e-01 | 100.0% | 37.7% |
| 4018988 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.67 | 52.0 | 4.28e-01 | 81.7% | 79.3% |
| 3236833 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.67 | 57.0 | 3.93e-01 | 93.9% | 95.4% |
| 3572186 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.66 | 56.0 | 3.82e-01 | 92.7% | 92.8% |
| 5019857 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.66 | 50.0 | 3.78e-01 | 81.7% | 38.5% |
| 3459971 | 5084.5.3.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › PF28611 | 0.63 | 59.0 | 3.90e-01 | 100.0% | 31.3% |
| 5003245 | 243.8.1.0 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein | 0.61 | 45.0 | 4.84e-01 | 79.3% | 98.6% |
| 4033519 | 243.3.1.30 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3139 | 0.60 | 47.0 | 4.72e-01 | 86.6% | 88.2% |
| 3471678 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.60 | 49.0 | 3.96e-01 | 91.5% | 83.0% |
| 3280401 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.58 | 40.0 | 4.39e-01 | 70.7% | 92.3% |
| 4670897 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 51.0 | 4.30e-01 | 100.0% | 75.0% |
| 1870982 | 10.1.1.41 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 | 0.55 | 45.0 | 3.43e-01 | 90.2% | 54.7% |
| 3262165 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.53 | 44.0 | 3.00e-01 | 91.5% | 89.8% |
| 3530641 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.52 | 44.0 | 2.79e-01 | 100.0% | 51.2% |
D2
medium
residues 11-63
D3
medium
residues 520-601
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.68 | 46.0 | 5.21e-01 | 98.8% | 92.1% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.65 | 36.0 | 2.57e-01 | 91.5% | 17.4% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 52.0 | 3.97e-01 | 100.0% | 54.6% |
| 2kdyA01 | 2.60.40.1980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 49.0 | 4.12e-01 | 98.8% | 82.8% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 49.0 | 3.30e-01 | 100.0% | 98.2% |
| 2fsdA00 | 2.60.40.2460 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain | 0.54 | 44.0 | 3.99e-01 | 87.8% | 100.0% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.54 | 47.0 | 3.64e-01 | 93.9% | 63.2% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 49.0 | 3.73e-01 | 100.0% | 54.3% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.54 | 45.0 | 3.57e-01 | 93.9% | 75.4% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.53 | 44.0 | 3.83e-01 | 89.0% | 86.1% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.33e-01 | 100.0% | 44.1% |
| 3mwxA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 46.0 | 3.16e-01 | 100.0% | 98.1% |
| 5vxzA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.58e-01 | 98.8% | 49.2% |
| 5f1mA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 46.0 | 3.31e-01 | 100.0% | 63.0% |
| 2pk0A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.53 | 46.0 | 3.34e-01 | 100.0% | 64.4% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 44.0 | 2.93e-01 | 92.7% | 64.6% |
| 2iecD00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.51 | 38.0 | 3.46e-01 | 81.7% | 69.2% |
| 3dhuA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 43.0 | 4.54e-01 | 91.5% | 100.0% |
| 4amwA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 44.0 | 3.63e-01 | 97.6% | 87.2% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 45.0 | 3.73e-01 | 100.0% | 72.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3733600 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.65 | 59.0 | 4.36e-01 | 100.0% | 50.7% |
| 4466468 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.61 | 53.0 | 4.03e-01 | 98.8% | 69.5% |
| 3553322 | 5089.1.1.3 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin | 0.61 | 51.0 | 3.61e-01 | 91.5% | 59.2% |
| 3994274 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.61 | 54.0 | 3.81e-01 | 100.0% | 40.6% |
| 3779854 | 7026.1.1.19 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › VPS13_M | 0.60 | 55.0 | 3.27e-01 | 100.0% | 18.8% |
| 3955351 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.60 | 42.0 | 4.85e-01 | 96.3% | 100.0% |
| 3639220 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.60 | 54.0 | 3.49e-01 | 100.0% | 41.4% |
| 3415164 | 7026.1.1.13 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Hobbit | 0.60 | 53.0 | 3.92e-01 | 97.6% | 39.7% |
| 3955533 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.58 | 41.0 | 4.29e-01 | 97.6% | 81.3% |
| 1322956 | 9.25.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein BACOVA_03322 C-terminal domain › Uncharacterized protein BACOVA_03322 C-terminal domain › BT_3044-like_C | 0.57 | 49.0 | 3.94e-01 | 100.0% | 47.9% |
| 5029147 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 44.0 | 4.46e-01 | 93.9% | 82.5% |
| 3898360 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.57 | 46.0 | 4.21e-01 | 89.0% | 73.6% |
| 4402932 | 12.2.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C | 0.55 | 45.0 | 3.84e-01 | 86.6% | 87.2% |
| 3934301 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.55 | 45.0 | 3.39e-01 | 92.7% | 75.8% |
| 4024026 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.54 | 49.0 | 3.33e-01 | 100.0% | 62.1% |
| 3517739 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.54 | 46.0 | 3.61e-01 | 100.0% | 68.0% |
| 3616310 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 45.0 | 2.96e-01 | 97.6% | 41.0% |
| 3472687 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 44.0 | 3.11e-01 | 90.2% | 40.0% |
| 3438237 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.52 | 44.0 | 3.17e-01 | 92.7% | 40.8% |
| 3945044 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.52 | 39.0 | 3.31e-01 | 93.9% | 47.5% |
| 3385723 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.52 | 45.0 | 4.35e-01 | 100.0% | 97.9% |
| 3682806 | 213.1.1.71 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29847 | 0.51 | 43.0 | 3.43e-01 | 93.9% | 72.9% |
| 4251489 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.51 | 44.0 | 3.22e-01 | 100.0% | 73.4% |
| 3235057 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.51 | 46.0 | 3.07e-01 | 100.0% | 80.3% |
| 5064686 | 4178.1.1.1 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 | 0.51 | 46.0 | 3.94e-01 | 100.0% | 97.7% |
| 4488185 | 3772.1.1.1 ↗ | beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR | 0.51 | 46.0 | 3.84e-01 | 100.0% | 67.1% |
| 4263209 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.50 | 45.0 | 3.87e-01 | 100.0% | 77.7% |
| 3816781 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.50 | 39.0 | 2.90e-01 | 84.1% | 49.3% |
| 3270083 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.50 | 37.0 | 2.72e-01 | 80.5% | 50.8% |
| 3360289 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.50 | 44.0 | 3.37e-01 | 100.0% | 79.0% |
D4
medium
residues 798-923
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27051.1 best | TamB_N | 61.0 | 9.80e-17 | 99.2% | 13.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.77 | 69.0 | 4.92e-01 | 96.0% | 49.3% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.73 | 67.0 | 4.21e-01 | 99.2% | 28.0% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.61 | 53.0 | 4.76e-01 | 92.9% | 82.2% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.61 | 55.0 | 4.20e-01 | 100.0% | 83.8% |
| 1mdcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 42.0 | 4.14e-01 | 96.0% | 68.7% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 44.0 | 4.19e-01 | 77.8% | 83.3% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.58 | 45.0 | 3.87e-01 | 83.3% | 79.9% |
| 5e1qB01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 40.0 | 3.14e-01 | 71.4% | 71.6% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 39.0 | 3.84e-01 | 96.8% | 66.2% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 52.0 | 4.10e-01 | 100.0% | 85.5% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 37.0 | 3.47e-01 | 96.8% | 53.5% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 34.0 | 4.27e-01 | 84.1% | 100.0% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.56 | 42.0 | 4.16e-01 | 79.4% | 80.5% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 46.0 | 3.10e-01 | 91.3% | 82.3% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.55 | 48.0 | 4.13e-01 | 98.4% | 75.9% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 49.0 | 3.59e-01 | 100.0% | 62.5% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 43.0 | 4.02e-01 | 83.3% | 68.8% |
| 1lshA04 | 2.20.80.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 | 0.55 | 51.0 | 4.00e-01 | 100.0% | 97.2% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 3.65e-01 | 84.9% | 61.3% |
| 3actA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.53 | 45.0 | 3.50e-01 | 92.9% | 90.1% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 45.0 | 4.21e-01 | 96.0% | 75.8% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 45.0 | 4.26e-01 | 97.6% | 88.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986334 | 5084.5.4.14 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TamB, PF27051 | 0.85 | 81.0 | 5.26e-01 | 100.0% | 26.2% |
| 4007382 | 1121.1.1.6 ↗ | alpha superhelices › Hypothetical protein SF216 › Hypothetical protein SF216 › Hypothetical protein SF216 › DUF945 | 0.75 | 66.0 | 4.86e-01 | 92.9% | 49.2% |
| 3404731 | 5084.5.1.37 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C | 0.72 | 64.0 | 5.64e-01 | 96.0% | 85.6% |
| 3944022 | 5084.5.1.19 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › AsmA | 0.71 | 66.0 | 4.80e-01 | 100.0% | 55.4% |
| 3892200 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.71 | 66.0 | 5.28e-01 | 100.0% | 53.6% |
| 3716267 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.70 | 63.0 | 4.54e-01 | 95.2% | 43.0% |
| 4335679 | 5084.5.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 | 0.70 | 64.0 | 4.70e-01 | 96.8% | 57.2% |
| 3398781 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.69 | 50.0 | 3.85e-01 | 75.4% | 77.5% |
| 3388794 | 71.2.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like | 0.69 | 63.0 | 4.97e-01 | 96.8% | 57.5% |
| 3490071 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.68 | 63.0 | 5.10e-01 | 100.0% | 64.7% |
| 2582184 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.66 | 50.0 | 3.90e-01 | 80.2% | 75.7% |
| 3516317 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.63 | 56.0 | 4.53e-01 | 97.6% | 99.2% |
| 3992499 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.62 | 55.0 | 4.48e-01 | 97.6% | 100.0% |
| 3625846 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.62 | 55.0 | 4.41e-01 | 100.0% | 98.5% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.60 | 51.0 | 3.78e-01 | 91.3% | 61.8% |
| 4021785 | 1100.1.1.0 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein | 0.60 | 54.0 | 4.39e-01 | 100.0% | 99.2% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.60 | 37.0 | 4.11e-01 | 73.0% | 78.0% |
| 3288669 | 331.3.1.27 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 | 0.57 | 52.0 | 4.83e-01 | 100.0% | 87.5% |
| 4614038 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.57 | 39.0 | 3.89e-01 | 95.2% | 66.9% |
| 3726450 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 42.0 | 3.71e-01 | 76.2% | 87.8% |
| 143824 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.56 | 46.0 | 3.12e-01 | 88.9% | 79.6% |
| 875 | 9.13.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 | 0.56 | 42.0 | 4.16e-01 | 79.4% | 80.5% |
| 3342595 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.53 | 46.0 | 4.14e-01 | 94.4% | 93.1% |
| 3453774 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.52 | 46.0 | 4.15e-01 | 95.2% | 84.6% |
| 3808409 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.52 | 44.0 | 3.59e-01 | 92.9% | 98.4% |
D5
medium
residues 924-1065
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27051.1 best | TamB_N | 73.3 | 1.80e-20 | 100.0% | 15.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.64 | 59.0 | 3.76e-01 | 97.9% | 39.1% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.62 | 57.0 | 3.99e-01 | 97.2% | 42.9% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.62 | 56.0 | 4.22e-01 | 95.1% | 63.1% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.61 | 55.0 | 4.14e-01 | 97.2% | 49.7% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 3.61e-01 | 76.1% | 85.2% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.57 | 52.0 | 3.64e-01 | 97.2% | 61.8% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.56 | 50.0 | 3.99e-01 | 97.9% | 68.5% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.55 | 49.0 | 4.15e-01 | 98.6% | 74.4% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 38.0 | 3.89e-01 | 92.3% | 73.2% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 47.0 | 4.10e-01 | 96.5% | 94.4% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.51 | 45.0 | 3.77e-01 | 97.2% | 94.4% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.45e-01 | 80.3% | 54.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976877 | 5084.5.1.44 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TamB, PF27051 | 0.81 | 77.0 | 4.81e-01 | 100.0% | 21.7% |
| 3946752 | 5084.5.3.10 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB, PF27051 | 0.80 | 76.0 | 5.46e-01 | 100.0% | 39.2% |
| 3986334 | 5084.5.4.14 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TamB, PF27051 | 0.79 | 75.0 | 5.04e-01 | 100.0% | 29.8% |
| 3974591 | 7026.1.1.21 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › YhdP | 0.76 | 65.0 | 5.03e-01 | 90.8% | 61.0% |
| 4256431 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.62 | 56.0 | 3.77e-01 | 97.2% | 44.4% |
| 3824904 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.60 | 53.0 | 4.00e-01 | 95.1% | 61.8% |
| 3838086 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.59 | 47.0 | 4.45e-01 | 90.8% | 71.5% |
| 3352673 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.58 | 52.0 | 3.90e-01 | 95.8% | 61.2% |
| 3595622 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.57 | 50.0 | 4.25e-01 | 96.5% | 83.8% |
| 885 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.56 | 50.0 | 3.99e-01 | 97.9% | 68.5% |
| 3925088 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.54 | 47.0 | 4.14e-01 | 95.8% | 82.6% |
| 4012809 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.54 | 43.0 | 3.82e-01 | 85.9% | 95.2% |
| 3387368 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.53 | 47.0 | 3.90e-01 | 99.3% | 91.7% |
| 2983803 | 883.1.1.4 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Clostridium_P47 | 0.53 | 40.0 | 3.40e-01 | 79.6% | 58.1% |
| 3621362 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.53 | 47.0 | 3.35e-01 | 100.0% | 90.4% |
| 4353229 | 5084.5.4.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein | 0.52 | 41.0 | 3.26e-01 | 82.4% | 95.9% |
| 3697524 | 9.2.1.7 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 | 0.52 | 33.0 | 3.96e-01 | 88.7% | 100.0% |
D6
medium
residues 1066-1195
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mh9A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.69 | 42.0 | 3.56e-01 | 80.0% | 37.6% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.68 | 52.0 | 4.96e-01 | 94.6% | 68.9% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.66 | 51.0 | 4.88e-01 | 94.6% | 69.1% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.64 | 45.0 | 4.88e-01 | 94.6% | 87.7% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 41.0 | 4.02e-01 | 79.2% | 58.6% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.62 | 54.0 | 3.44e-01 | 94.6% | 80.3% |
| 3q1nA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 44.0 | 3.40e-01 | 75.4% | 94.9% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.60 | 48.0 | 4.59e-01 | 83.8% | 90.7% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.59 | 53.0 | 3.69e-01 | 96.9% | 41.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.59 | 46.0 | 4.06e-01 | 89.2% | 57.6% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 52.0 | 3.30e-01 | 95.4% | 26.1% |
| 4bumX00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.57 | 43.0 | 3.32e-01 | 94.6% | 35.7% |
| 2f1cX00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.57 | 51.0 | 4.08e-01 | 96.9% | 70.2% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 33.0 | 4.08e-01 | 79.2% | 92.8% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.56 | 42.0 | 3.71e-01 | 79.2% | 87.4% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.55 | 48.0 | 4.08e-01 | 94.6% | 60.8% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 40.0 | 3.81e-01 | 81.5% | 64.3% |
| 3k0zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 48.0 | 4.58e-01 | 94.6% | 99.3% |
| 1s1dA00 | 2.120.10.100 | Mainly Beta › 6 Propeller › Neuraminidase › Apyrase | 0.54 | 43.0 | 3.24e-01 | 83.8% | 54.6% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.54 | 49.0 | 3.70e-01 | 98.5% | 77.3% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 4.36e-01 | 94.6% | 90.1% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 44.0 | 4.19e-01 | 95.4% | 75.2% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.53 | 46.0 | 4.40e-01 | 96.2% | 93.5% |
| 3k25A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 44.0 | 3.45e-01 | 93.8% | 92.0% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 45.0 | 3.37e-01 | 96.9% | 94.4% |
| 3fljA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 43.0 | 4.18e-01 | 90.8% | 87.2% |
| 4lmiB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 41.0 | 4.10e-01 | 86.2% | 83.8% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 3.33e-01 | 70.8% | 100.0% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.50 | 36.0 | 3.14e-01 | 73.8% | 82.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946752 | 5084.5.3.10 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB, PF27051 | 0.82 | 77.0 | 5.43e-01 | 100.0% | 36.2% |
| 3986334 | 5084.5.4.14 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TamB, PF27051 | 0.82 | 77.0 | 5.07e-01 | 100.0% | 27.5% |
| 3976877 | 5084.5.1.44 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TamB, PF27051 | 0.81 | 76.0 | 4.72e-01 | 100.0% | 20.0% |
| 3945984 | 5084.5.1.22 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 | 0.76 | 68.0 | 4.37e-01 | 96.2% | 63.7% |
| 3683177 | 5084.5.1.31 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TamB | 0.72 | 66.0 | 4.79e-01 | 100.0% | 54.3% |
| 3982863 | 5084.5.1.22 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 | 0.70 | 64.0 | 4.41e-01 | 99.2% | 35.8% |
| 3965256 | 5084.5.1.39 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27051 | 0.70 | 64.0 | 4.70e-01 | 100.0% | 41.5% |
| 3363227 | 5084.5.3.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TamB | 0.68 | 61.0 | 4.14e-01 | 100.0% | 27.8% |
| 4010124 | 5084.5.2.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP | 0.67 | 62.0 | 4.57e-01 | 99.2% | 40.9% |
| 4610039 | 5084.5.4.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 | 0.67 | 56.0 | 4.14e-01 | 88.5% | 47.9% |
| 5033173 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.65 | 48.0 | 5.20e-01 | 81.5% | 89.9% |
| 3970343 | 5084.5.1.24 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Gcw_chp | 0.63 | 57.0 | 4.70e-01 | 94.6% | 72.6% |
| 5009761 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.62 | 50.0 | 4.87e-01 | 97.7% | 77.2% |
| 3838829 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.61 | 55.0 | 4.86e-01 | 98.5% | 90.3% |
| 3242795 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.61 | 44.0 | 3.99e-01 | 76.2% | 97.2% |
| 3625919 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.60 | 48.0 | 4.31e-01 | 85.4% | 86.1% |
| 3574877 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.59 | 44.0 | 3.32e-01 | 85.4% | 32.9% |
| 4319216 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.57 | 46.0 | 4.15e-01 | 96.9% | 61.1% |
| 3174053 | 5.1.4.582 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30032 | 0.56 | 46.0 | 3.32e-01 | 88.5% | 47.8% |
| 3276021 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.56 | 44.0 | 2.97e-01 | 84.6% | 54.1% |
| 3703043 | 5.1.4.597 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_3 | 0.55 | 44.0 | 3.39e-01 | 85.4% | 60.3% |
| 3481572 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.55 | 42.0 | 3.24e-01 | 93.8% | 36.8% |
| 4309919 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.54 | 48.0 | 4.27e-01 | 97.7% | 85.4% |
| 3396092 | 5.1.2.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase | 0.54 | 43.0 | 3.22e-01 | 84.6% | 54.6% |
| 3227628 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.52 | 42.0 | 3.05e-01 | 90.8% | 32.5% |
| 3589839 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.51 | 45.0 | 3.40e-01 | 97.7% | 94.0% |
| 3788774 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.50 | 44.0 | 4.27e-01 | 96.2% | 97.2% |
D7
medium
residues 1227-1234_1319-1412