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CAKLQF020000002.1__CAH1073577.1__SAMEA5780031_00573__00203
Bact-VirCAKLQF020000002.1__CAH1073577.1__SAMEA5780031_00573__00203
Identity
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-65
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o3fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 54.0 | 4.91e-01 | 96.8% | 79.3% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 4.48e-01 | 77.4% | 79.4% |
| 3dwlE00 | 6.10.20.160 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.59 | 37.0 | 3.69e-01 | 74.2% | 61.9% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 49.0 | 4.32e-01 | 96.8% | 64.9% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 4.32e-01 | 98.4% | 84.2% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.37e-01 | 88.7% | 89.1% |
| 4bx8A04 | 1.25.40.850 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b | 0.54 | 36.0 | 3.27e-01 | 71.0% | 47.8% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 45.0 | 3.16e-01 | 100.0% | 28.3% |
| 2k19A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 42.0 | 3.76e-01 | 100.0% | 72.4% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 38.0 | 3.31e-01 | 85.5% | 91.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 71.0 | 6.76e-01 | 100.0% | 81.4% |
| 4997105 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 54.0 | 5.02e-01 | 96.8% | 86.3% |
| 3936487 | 135.1.1.0 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain | 0.61 | 50.0 | 4.22e-01 | 100.0% | 77.5% |
| 3837009 | 6157.1.1.7 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › RPW8 | 0.56 | 44.0 | 3.94e-01 | 95.2% | 82.0% |
| 4630964 | 610.1.1.1 ↗ | alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 | 0.53 | 36.0 | 3.46e-01 | 72.6% | 76.0% |
| 3588719 | 564.1.1.0 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors | 0.53 | 37.0 | 3.67e-01 | 75.8% | 84.6% |
| 5023026 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 40.0 | 2.86e-01 | 93.5% | 28.0% |
D2
high
residues 136-209
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.81 | 73.0 | 5.88e-01 | 100.0% | 63.8% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.72 | 55.0 | 4.93e-01 | 79.7% | 99.0% |
| 2fefA01 | 1.20.1440.70 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like | 0.72 | 64.0 | 5.41e-01 | 100.0% | 88.0% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 48.0 | 4.75e-01 | 79.7% | 69.2% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 5.10e-01 | 79.7% | 92.1% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.84e-01 | 81.1% | 70.0% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.67 | 47.0 | 4.81e-01 | 90.5% | 75.3% |
| 7mqvC02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.67 | 36.0 | 3.19e-01 | 97.3% | 37.1% |
| 6vw7B03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.66 | 58.0 | 5.58e-01 | 100.0% | 96.4% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.64 | 54.0 | 3.90e-01 | 95.9% | 44.3% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.62 | 48.0 | 4.84e-01 | 100.0% | 83.8% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.61 | 52.0 | 4.78e-01 | 100.0% | 91.3% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 49.0 | 4.03e-01 | 91.9% | 92.6% |
| 5hfiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 46.0 | 3.39e-01 | 85.1% | 31.7% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 3.85e-01 | 81.1% | 57.4% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 47.0 | 4.12e-01 | 85.1% | 85.8% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 49.0 | 4.42e-01 | 94.6% | 72.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 49.0 | 4.21e-01 | 93.2% | 84.6% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 45.0 | 3.64e-01 | 87.8% | 89.0% |
| 6cw0A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 47.0 | 4.35e-01 | 100.0% | 91.3% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 41.0 | 4.32e-01 | 90.5% | 92.2% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 38.0 | 3.38e-01 | 73.0% | 54.9% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 45.0 | 4.00e-01 | 94.6% | 82.9% |
| 1c1kA02 | 1.10.220.50 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain | 0.50 | 36.0 | 3.23e-01 | 81.1% | 50.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026213 | 632.3.1.10 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › ACDC | 0.79 | 72.0 | 6.61e-01 | 100.0% | 87.4% |
| 4990419 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.73 | 50.0 | 3.87e-01 | 70.3% | 62.5% |
| 4080847 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.73 | 62.0 | 6.38e-01 | 94.6% | 98.6% |
| 5042643 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.71 | 55.0 | 5.64e-01 | 82.4% | 88.6% |
| 4992348 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.71 | 52.0 | 3.62e-01 | 79.7% | 23.7% |
| 5008482 | 3572.1.1.0 ↗ | a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 | 0.70 | 62.0 | 5.44e-01 | 98.6% | 73.6% |
| 3919601 | 7061.1.1.0 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module | 0.68 | 55.0 | 5.50e-01 | 91.9% | 89.3% |
| 3660328 | 633.18.1.2 ↗ | alpha bundles › Bromodomain-like › ExoU toxin C-terminal domain › ExoU toxin C-terminal domain › PF31066 | 0.66 | 57.0 | 4.98e-01 | 95.9% | 81.8% |
| 3325143 | 632.2.1.26 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PF31066 | 0.65 | 56.0 | 4.91e-01 | 95.9% | 80.0% |
| 5017861 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.64 | 54.0 | 3.48e-01 | 95.9% | 33.9% |
| 4011916 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.63 | 43.0 | 4.21e-01 | 70.3% | 68.8% |
| 3249842 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 47.0 | 3.16e-01 | 78.4% | 23.5% |
| 4945001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 54.0 | 4.96e-01 | 100.0% | 88.0% |
| 3403335 | 193.1.1.28 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › RLL | 0.61 | 46.0 | 4.25e-01 | 83.8% | 61.0% |
| 3716219 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 51.0 | 4.51e-01 | 98.6% | 75.8% |
| 3358888 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.57 | 43.0 | 3.89e-01 | 83.8% | 64.5% |
| 4926806 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 4.16e-01 | 94.6% | 84.4% |