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CAKLQF020000002.1__CAH1073667.1__SAMEA5780031_00618__00247
Bact-VirCAKLQF020000002.1__CAH1073667.1__SAMEA5780031_00618__00247
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-68
Domain cluster:
rep: MW145137.1__QPB11287.1__X__00014__D5-56
D2
high
residues 86-201
Domain cluster:
rep: MK448940.1__QBX28202.1__Javan444_0040__00013__D85-185
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03837.20 best | RecT | 35.6 | 9.70e-09 | 100.0% | 40.6% |
D3
high
residues 216-276
Domain cluster:
rep: OM373202.1__UKM31218.1__CrLKS3_g36__00036__D222-275
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.68 | 59.0 | 5.27e-01 | 100.0% | 95.5% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 56.0 | 5.06e-01 | 100.0% | 93.3% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 49.0 | 4.51e-01 | 85.2% | 85.1% |
| 2r6fA02 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.63 | 55.0 | 4.06e-01 | 95.1% | 76.1% |
| 2optA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 44.0 | 3.36e-01 | 73.8% | 41.7% |
| 2e1qC02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.63 | 49.0 | 4.29e-01 | 90.2% | 53.9% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 41.0 | 3.87e-01 | 73.8% | 90.7% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 44.0 | 3.37e-01 | 82.0% | 67.6% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.54 | 39.0 | 3.73e-01 | 77.0% | 77.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.53 | 37.0 | 3.67e-01 | 77.0% | 70.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027154 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.72 | 62.0 | 5.34e-01 | 100.0% | 89.0% |
| 5075237 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.68 | 48.0 | 4.27e-01 | 73.8% | 55.3% |
| 1007485 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.66 | 56.0 | 5.06e-01 | 100.0% | 93.3% |
| 4656329 | 3498.1.1.2 ↗ | alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 | 0.66 | 48.0 | 4.97e-01 | 78.7% | 90.9% |
| 3348499 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.65 | 47.0 | 4.08e-01 | 83.6% | 48.0% |
| 4290973 | 3498.1.1.2 ↗ | alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 | 0.64 | 45.0 | 4.64e-01 | 75.4% | 87.3% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.62 | 52.0 | 4.65e-01 | 100.0% | 88.4% |
| 4263015 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.62 | 45.0 | 4.79e-01 | 80.3% | 100.0% |
| 4075707 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.62 | 41.0 | 3.63e-01 | 72.1% | 45.3% |
| 3909706 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 40.0 | 3.69e-01 | 72.1% | 50.6% |
| 2526318 | 7093.1.1.1 ↗ | alpha arrays › Insertion domain of glycoside hydrolase family 149 (GH149) › Insertion domain of glycoside hydrolase family 149 (GH149) › Insertion domain of glycoside hydrolase family 149 (GH149) › PF31272 | 0.58 | 46.0 | 4.16e-01 | 91.8% | 75.0% |
| 5025673 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.57 | 45.0 | 3.29e-01 | 90.2% | 42.2% |
| 5060912 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 45.0 | 2.66e-01 | 100.0% | 39.6% |
| 4980637 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.53 | 39.0 | 3.48e-01 | 90.2% | 52.0% |