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CAKLQF020000002.1__CAH1073765.1__SAMEA5780031_00654__00282

Bact-Vir

CAKLQF020000002.1__CAH1073765.1__SAMEA5780031_00654__00282

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20260.5 best PUA_4 48.4 1.10e-12 72.7% 100.0%
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.93 84.0 8.38e-01 100.0% 92.6%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.93 87.0 8.47e-01 100.0% 91.7%
4l69A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.89 78.0 7.80e-01 100.0% 92.6%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.88 82.0 7.91e-01 100.0% 94.5%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.83 71.0 7.22e-01 100.0% 95.3%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.83 71.0 7.15e-01 100.0% 92.5%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.78 65.0 6.57e-01 100.0% 93.9%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.77 51.0 3.04e-01 80.3% 10.4%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 57.0 6.15e-01 83.3% 94.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 55.0 4.95e-01 98.5% 57.8%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 52.0 5.50e-01 81.8% 87.7%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.71 64.0 5.68e-01 98.5% 90.2%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.71 61.0 5.80e-01 93.9% 88.3%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.70 63.0 5.60e-01 100.0% 78.7%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.70 63.0 5.52e-01 100.0% 82.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 53.0 5.21e-01 98.5% 76.1%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 62.0 5.64e-01 100.0% 89.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 57.0 5.10e-01 90.9% 68.5%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 55.0 4.76e-01 89.4% 65.0%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 60.0 4.87e-01 100.0% 55.2%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 48.0 3.66e-01 75.8% 47.1%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 52.0 4.79e-01 89.4% 64.4%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 57.0 5.39e-01 100.0% 81.0%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 41.0 2.42e-01 98.5% 7.9%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 45.0 3.58e-01 74.2% 44.0%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 45.0 3.41e-01 74.2% 49.4%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 4.34e-01 83.3% 97.8%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 49.0 3.73e-01 83.3% 55.9%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 45.0 3.16e-01 100.0% 22.8%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 44.0 3.91e-01 100.0% 49.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 51.0 4.54e-01 95.5% 98.0%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 50.0 4.45e-01 93.9% 97.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 51.0 4.51e-01 95.5% 99.0%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.99e-01 86.4% 79.3%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 51.0 3.94e-01 98.5% 44.5%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 43.0 3.83e-01 100.0% 50.0%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 49.0 3.75e-01 95.5% 44.0%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 38.0 2.69e-01 86.4% 18.6%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 3.97e-01 87.9% 87.5%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 41.0 3.69e-01 100.0% 49.5%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 49.0 3.79e-01 95.5% 45.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 41.0 3.13e-01 74.2% 40.6%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 41.0 3.15e-01 74.2% 41.9%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 44.0 3.62e-01 83.3% 56.7%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 44.0 3.72e-01 100.0% 48.7%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 48.0 3.87e-01 100.0% 100.0%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.66e-01 86.4% 66.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 40.0 3.56e-01 74.2% 69.1%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.56 46.0 4.04e-01 97.0% 67.6%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.52e-01 86.4% 70.0%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 44.0 3.66e-01 87.9% 66.4%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 37.0 3.65e-01 97.0% 62.7%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.55 41.0 3.42e-01 86.4% 64.5%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.55 46.0 3.59e-01 100.0% 50.6%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.54 46.0 3.69e-01 98.5% 58.9%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 39.0 3.56e-01 100.0% 54.0%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 42.0 3.70e-01 97.0% 90.1%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.65e-01 100.0% 65.1%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 36.0 2.83e-01 75.8% 78.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.51 40.0 3.22e-01 86.4% 68.4%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 3.39e-01 87.9% 70.3%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.30e-01 84.8% 73.9%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.52e-01 100.0% 50.8%
7t28A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 2.88e-01 92.4% 45.3%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.51 43.0 3.40e-01 100.0% 63.2%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.50 39.0 3.26e-01 86.4% 68.3%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4340002 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.96 91.0 8.96e-01 100.0% 94.3%
3968161 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.95 89.0 8.68e-01 100.0% 92.9%
2136498 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.94 89.0 8.48e-01 100.0% 88.0%
137832 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.93 84.0 8.38e-01 100.0% 92.6%
21932 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.93 80.0 8.15e-01 100.0% 92.3%
2074171 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.93 86.0 8.44e-01 100.0% 92.9%
4537516 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.90 84.0 7.99e-01 100.0% 89.3%
3989371 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.89 80.0 8.12e-01 100.0% 96.9%
3263053 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.89 83.0 8.14e-01 100.0% 97.1%
3289974 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.89 82.0 8.06e-01 100.0% 94.3%
3386972 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.88 80.0 7.86e-01 100.0% 91.4%
3589428 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.88 82.0 8.04e-01 100.0% 94.3%
3959879 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.88 82.0 8.02e-01 100.0% 94.3%
4049740 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.88 81.0 7.78e-01 100.0% 92.0%
3838021 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.88 80.0 7.85e-01 100.0% 92.9%
3648449 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.87 80.0 7.12e-01 100.0% 93.3%
4387163 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.85 77.0 7.76e-01 100.0% 98.5%
4358637 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.84 78.0 7.64e-01 100.0% 95.7%
4024774 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.84 76.0 7.28e-01 100.0% 97.3%
1157725 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.83 71.0 7.19e-01 100.0% 93.9%
223216 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.82 74.0 7.31e-01 100.0% 94.3%
4143576 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.81 73.0 7.20e-01 100.0% 95.7%
3967965 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 72.0 7.14e-01 100.0% 94.3%
4006301 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.79 59.0 6.36e-01 81.8% 92.7%
5004368 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.79 60.0 6.52e-01 84.8% 96.4%
3382640 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 64.0 6.66e-01 93.9% 96.7%
5033424 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.78 60.0 6.32e-01 83.3% 90.0%
3839955 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.78 56.0 6.02e-01 81.8% 90.9%
4951165 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.77 59.0 6.38e-01 81.8% 96.4%
5064515 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 59.0 6.14e-01 83.3% 90.0%
4950522 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 54.0 5.82e-01 81.8% 89.1%
4194551 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 58.0 5.58e-01 98.5% 72.0%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 61.0 5.84e-01 98.5% 76.0%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 61.0 5.89e-01 98.5% 77.3%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.75 56.0 5.29e-01 86.4% 66.7%
2528374 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 57.0 5.46e-01 83.3% 70.1%
119323 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.74 57.0 6.05e-01 84.8% 94.8%
4060488 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 59.0 5.51e-01 98.5% 70.0%
3253514 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.74 65.0 5.62e-01 97.0% 95.0%
1688248 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.73 52.0 4.90e-01 89.4% 62.0%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 58.0 5.57e-01 98.5% 74.7%
1175750 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.73 52.0 4.98e-01 81.8% 64.9%
5036381 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.72 57.0 5.93e-01 83.3% 91.7%
5058387 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 63.0 6.24e-01 100.0% 91.4%
4402716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 5.36e-01 98.5% 68.2%
5012286 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.72 55.0 5.73e-01 81.8% 90.0%
5039180 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.70 54.0 3.73e-01 84.8% 38.3%
5063922 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.69 52.0 4.29e-01 81.8% 90.0%
4200507 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.69 54.0 5.06e-01 89.4% 70.0%
4097656 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 54.0 4.79e-01 86.4% 60.0%
4668791 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.68 55.0 4.72e-01 89.4% 55.2%
5076062 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 50.0 5.32e-01 83.3% 94.5%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.67 59.0 5.17e-01 98.5% 67.0%
3793066 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.67 54.0 4.80e-01 89.4% 62.4%
5037792 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.67 53.0 4.87e-01 86.4% 83.5%
4296283 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 50.0 4.64e-01 89.4% 63.5%
4270212 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 48.0 4.41e-01 86.4% 58.4%
None 0.66 46.0 3.22e-01 100.0% 22.3%
3286935 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 50.0 4.51e-01 84.8% 91.6%
3963338 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.65 56.0 3.51e-01 100.0% 27.9%
4135073 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 50.0 3.39e-01 87.9% 43.0%
3801304 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 45.0 3.62e-01 100.0% 35.7%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.63 44.0 3.99e-01 100.0% 51.6%
3451965 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.63 47.0 4.43e-01 81.8% 65.0%
3574784 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 4.63e-01 98.5% 62.7%
2554619 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 51.0 3.24e-01 93.9% 27.1%
3511269 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.62 43.0 3.60e-01 100.0% 40.8%
4004520 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.62 48.0 3.96e-01 86.4% 70.4%
3947140 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.61 48.0 3.98e-01 87.9% 63.3%
3966741 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 3.22e-01 95.5% 28.8%
3501513 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 41.0 3.59e-01 77.3% 47.5%
5040169 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.56e-01 74.2% 20.0%
1118504 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.59 49.0 3.82e-01 98.5% 43.5%
3390155 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 44.0 4.13e-01 86.4% 68.2%
1715838 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.57 41.0 3.17e-01 75.8% 43.2%
3971224 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 3.07e-01 84.8% 45.8%
4971897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.96e-01 87.9% 91.6%
1560911 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 43.0 3.53e-01 100.0% 44.4%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 42.0 3.44e-01 87.9% 62.1%
360905 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 41.0 3.59e-01 86.4% 53.7%
3707978 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.53 38.0 2.69e-01 100.0% 25.1%
3212137 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 44.0 3.03e-01 95.5% 35.1%
3169943 719.1.1.7 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF30203 0.52 46.0 3.59e-01 100.0% 91.7%
3211452 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.50 42.0 3.93e-01 97.0% 95.2%
D2 high residues 77-239
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04452.20 best Methyltrans_RNA 161.8 1.50e-47 96.9% 95.2%
CATH (82)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l69A02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.93 89.0 8.68e-01 100.0% 97.2%
1v6zA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.92 86.0 8.72e-01 100.0% 96.9%
1nxzB02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.92 89.0 8.72e-01 100.0% 96.0%
2egvA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.92 86.0 8.69e-01 98.2% 96.9%
1vhkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.91 85.0 8.59e-01 100.0% 96.9%
4j3cB02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.89 84.0 8.44e-01 100.0% 97.0%
1z85B02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.88 74.0 7.76e-01 99.4% 95.3%
3kw2B02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.87 84.0 8.27e-01 100.0% 95.9%
1ipaA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.79 69.0 7.12e-01 100.0% 96.7%
3gyqA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 68.0 6.84e-01 99.4% 91.5%
3l8uA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 66.0 6.77e-01 100.0% 93.5%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 67.0 6.90e-01 100.0% 96.2%
2i6dA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 68.0 6.95e-01 98.8% 96.2%
1gz0B02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.77 67.0 6.65e-01 99.4% 89.2%
1mxiA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.76 67.0 6.89e-01 100.0% 96.2%
1v2xA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.76 67.0 6.34e-01 100.0% 79.1%
2ha8B01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.76 67.0 6.91e-01 99.4% 98.7%
3onpA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.73 67.0 6.82e-01 98.2% 99.4%
2qmmA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.72 67.0 6.28e-01 99.4% 99.5%
3qg5C02 3.30.160.210 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › DNA double-strand break repair nuclease 0.70 32.0 4.65e-01 83.4% 98.6%
1tdjA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 34.0 4.35e-01 71.8% 83.7%
5vlcA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.66 51.0 5.22e-01 98.8% 82.9%
3o7bA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.65 61.0 5.53e-01 100.0% 99.5%
5ybwA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 30.0 3.79e-01 96.9% 73.5%
6mp7A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 58.0 4.54e-01 100.0% 99.4%
2eplX02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 58.0 4.66e-01 100.0% 98.4%
2jieA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 57.0 4.17e-01 100.0% 98.0%
4r27B00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 57.0 4.22e-01 100.0% 98.3%
8hi4B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 55.0 4.81e-01 98.8% 96.7%
1rh9A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 55.0 4.23e-01 100.0% 94.3%
1nthA00 3.20.20.460 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB 0.60 55.0 3.98e-01 100.0% 73.1%
1k92A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 45.0 4.60e-01 93.3% 80.0%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 54.0 4.22e-01 98.8% 100.0%
2jfzB01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 39.0 4.26e-01 98.8% 81.5%
4us5C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 54.0 4.24e-01 98.8% 98.8%
1telA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.58 54.0 4.46e-01 100.0% 84.8%
3o63A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 54.0 4.89e-01 100.0% 94.9%
1a5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 54.0 4.60e-01 100.0% 93.3%
2r60A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 52.0 4.78e-01 98.8% 76.3%
5tcgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 54.0 4.63e-01 100.0% 92.8%
2wvlB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 48.0 3.66e-01 89.6% 65.2%
2jfnA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 38.0 3.93e-01 98.8% 71.1%
4impA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 51.0 4.39e-01 98.2% 82.8%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 47.0 3.84e-01 89.6% 90.0%
4rheC00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.56 50.0 4.69e-01 97.5% 94.0%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 4.68e-01 89.6% 99.2%
1ps9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 4.78e-01 96.3% 96.6%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 46.0 4.88e-01 87.1% 100.0%
1xi3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 50.0 4.70e-01 99.4% 98.5%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 46.0 4.23e-01 89.0% 93.0%
3g79A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 49.0 4.44e-01 96.9% 88.8%
4muoA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.55 49.0 4.36e-01 98.2% 91.2%
4e12A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 50.0 4.71e-01 98.2% 89.6%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 46.0 3.89e-01 90.2% 91.6%
6bz0D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 50.0 4.44e-01 98.2% 95.6%
2vyoA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.55 50.0 4.63e-01 99.4% 87.9%
5y8lB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 4.80e-01 96.3% 93.8%
4cujA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 40.0 4.41e-01 100.0% 94.0%
1gteA03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 50.0 4.69e-01 100.0% 88.3%
2v82A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 50.0 4.62e-01 100.0% 97.1%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 46.0 4.54e-01 90.8% 88.4%
3we7A00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.54 47.0 3.95e-01 93.9% 82.4%
3mcnB02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.53 46.0 4.11e-01 94.5% 97.5%
6xh5B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 49.0 4.63e-01 100.0% 97.5%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 49.0 4.88e-01 100.0% 98.8%
6uczB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.53 48.0 4.12e-01 100.0% 98.1%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 49.0 4.66e-01 100.0% 98.4%
2wtbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 4.61e-01 97.5% 93.9%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 4.32e-01 98.2% 94.9%
2r3bA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 48.0 4.05e-01 100.0% 73.8%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 4.38e-01 98.8% 93.9%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 44.0 3.80e-01 90.2% 91.5%
2hqmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 47.0 4.26e-01 100.0% 95.6%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 47.0 4.59e-01 100.0% 99.5%
1ufvA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 4.29e-01 90.2% 90.1%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 47.0 4.28e-01 99.4% 99.1%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 47.0 4.23e-01 100.0% 80.2%
1sbzD00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.51 45.0 4.39e-01 98.2% 95.1%
4h4rA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 46.0 4.46e-01 99.4% 94.6%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.76e-01 91.4% 87.6%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 46.0 3.31e-01 98.8% 99.8%
1qzuA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.50 45.0 4.57e-01 98.2% 97.5%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4295280 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.94 91.0 8.53e-01 100.0% 90.0%
3989396 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.94 91.0 8.71e-01 100.0% 96.1%
4242803 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.94 88.0 8.89e-01 96.9% 98.1%
331445 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.93 87.0 8.49e-01 100.0% 90.2%
4184305 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.92 90.0 8.80e-01 100.0% 95.4%
165388 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.92 86.0 8.66e-01 98.2% 96.3%
4071834 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.91 88.0 8.68e-01 100.0% 95.3%
10987 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.91 85.0 8.57e-01 100.0% 96.3%
3263085 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.91 87.0 8.22e-01 100.0% 98.4%
10986 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.90 87.0 8.51e-01 100.0% 95.4%
4358638 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.90 87.0 8.52e-01 100.0% 94.8%
3447244 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.90 87.0 8.45e-01 100.0% 93.1%
4183854 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.90 86.0 8.30e-01 100.0% 95.0%
223215 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.89 84.0 8.47e-01 100.0% 97.6%
4449293 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.89 84.0 8.42e-01 98.8% 98.2%
4024776 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.89 85.0 8.07e-01 100.0% 93.5%
3967964 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.88 82.0 8.24e-01 96.9% 97.0%
137833 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.88 84.0 8.28e-01 100.0% 94.8%
3838039 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.88 78.0 7.98e-01 96.9% 96.8%
1157724 2488.1.1.12 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.88 72.0 7.61e-01 99.4% 94.5%
5013848 2488.1.1.16 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SPOUT_MTase_2 0.81 77.0 7.03e-01 100.0% 84.9%
5039042 2488.1.1.16 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SPOUT_MTase_2 0.80 76.0 7.32e-01 100.0% 96.7%
5023632 2488.1.1.14 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DUF2122 0.79 71.0 7.30e-01 98.8% 98.7%
3385648 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.78 66.0 6.76e-01 96.9% 92.3%
4025403 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.78 68.0 6.38e-01 100.0% 76.9%
4347797 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.77 68.0 6.17e-01 100.0% 71.4%
3950061 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.77 68.0 6.89e-01 100.0% 94.9%
2097586 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.77 67.0 6.81e-01 100.0% 93.2%
1285881 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.76 67.0 6.82e-01 100.0% 95.6%
277675 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.75 68.0 6.65e-01 100.0% 89.1%
4275105 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.75 67.0 6.72e-01 100.0% 93.3%
4050011 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.74 67.0 6.63e-01 100.0% 91.1%
4938484 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.73 68.0 6.28e-01 100.0% 100.0%
5073945 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.72 68.0 6.26e-01 100.0% 99.5%
3477793 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.72 68.0 6.23e-01 99.4% 92.7%
4943643 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.72 67.0 6.29e-01 98.2% 100.0%
142819 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.72 68.0 6.21e-01 100.0% 99.0%
4986238 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.71 67.0 6.24e-01 99.4% 100.0%
4982465 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.71 67.0 6.43e-01 99.4% 100.0%
4948802 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.71 65.0 6.19e-01 97.5% 100.0%
5028106 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.70 66.0 6.22e-01 98.8% 100.0%
3173745 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.70 65.0 5.83e-01 97.5% 79.1%
3595379 2488.1.1.0 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.70 66.0 5.59e-01 100.0% 72.2%
3786247 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.70 64.0 5.72e-01 96.9% 74.1%
4978856 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.70 65.0 6.02e-01 99.4% 100.0%
5045222 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.70 65.0 6.18e-01 99.4% 100.0%
5041538 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.69 64.0 6.03e-01 96.9% 98.4%
4444461 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.69 65.0 5.99e-01 100.0% 100.0%
5070661 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.69 65.0 5.94e-01 100.0% 100.0%
3176030 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.69 50.0 5.66e-01 90.2% 100.0%
5043189 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.67 49.0 5.56e-01 98.2% 97.6%
4493679 7543.1.1.2 a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.65 40.0 4.79e-01 97.5% 93.3%
5035654 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.65 51.0 3.75e-01 98.8% 31.6%
4991997 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.64 48.0 5.09e-01 90.8% 89.3%
5038196 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.63 53.0 4.99e-01 98.8% 73.0%
5072160 7542.1.2.3 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › AcnX_2nd 0.63 35.0 4.49e-01 90.8% 96.7%
5044260 7542.1.2.3 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › AcnX_2nd 0.63 36.0 4.55e-01 92.0% 95.8%
4320365 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.63 49.0 4.50e-01 98.8% 62.3%
4933889 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 49.0 5.35e-01 91.4% 100.0%
3507027 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 57.0 4.07e-01 100.0% 53.8%
3972418 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 48.0 5.17e-01 92.6% 99.3%
4955707 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.61 45.0 5.01e-01 89.0% 97.7%
3459195 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 50.0 5.00e-01 98.2% 84.7%
3233177 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 55.0 3.56e-01 100.0% 33.2%
3628646 2002.1.1.185 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 0.60 55.0 4.11e-01 100.0% 93.4%
4974199 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 46.0 5.00e-01 92.6% 97.8%
5041095 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 46.0 4.96e-01 90.8% 99.3%
3479417 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.58 47.0 5.05e-01 88.3% 100.0%
4001806 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.58 49.0 4.84e-01 90.8% 86.3%
3365939 7512.1.1.63 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1+GT-B_Sucrose_synth 0.58 52.0 4.68e-01 100.0% 70.4%
4436117 7516.1.1.22 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Osmo_MPGsynth 0.58 48.0 3.67e-01 89.6% 67.5%
4926932 7516.1.1.22 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Osmo_MPGsynth 0.57 49.0 3.66e-01 90.2% 66.1%
4313819 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.57 48.0 3.60e-01 100.0% 35.7%
3511076 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.57 47.0 4.99e-01 90.8% 98.6%
5024574 2002.1.1.44 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase 0.57 52.0 4.35e-01 100.0% 87.3%
4963368 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 43.0 4.72e-01 90.2% 100.0%
5030902 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 51.0 4.98e-01 100.0% 92.2%
4982163 2002.1.1.44 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase 0.56 51.0 4.26e-01 100.0% 89.1%
5071902 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.55 51.0 4.99e-01 100.0% 95.4%
3604260 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 47.0 4.00e-01 92.6% 63.0%
3583171 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 47.0 4.71e-01 93.3% 91.5%
1565416 7516.1.1.3 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2,Glyco_transf_7C 0.54 45.0 3.59e-01 90.2% 67.8%
4559481 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.54 48.0 4.67e-01 98.2% 95.7%
4968360 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.54 50.0 4.84e-01 100.0% 92.2%
3230423 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.54 48.0 4.49e-01 97.5% 82.4%
5064313 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.54 49.0 4.49e-01 100.0% 77.7%
5060157 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.54 49.0 4.85e-01 100.0% 94.3%
3237440 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 45.0 4.25e-01 92.6% 90.2%
5081799 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 48.0 3.87e-01 100.0% 95.8%
4028286 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.52 47.0 4.25e-01 100.0% 73.2%
3189147 7516.1.1.108 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_17 0.52 45.0 3.48e-01 92.6% 79.0%
5077804 7567.1.1.1 a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.52 45.0 4.13e-01 95.7% 75.9%
4968893 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.50 46.0 3.78e-01 100.0% 76.9%