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CAKLQF020000003.1__CAH1076156.1__SAMEA5780031_00688__00024
Bact-VirCAKLQF020000003.1__CAH1076156.1__SAMEA5780031_00688__00024
Identity
- Kingdom:
- phage
Quality
96.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61_175-341
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02547.21 best | Queuosine_synth | 259.4 | 6.30e-77 | 73.9% | 50.5% |
| PF02547.21 | Queuosine_synth | 63.7 | 2.30e-17 | 27.0% | 18.7% |
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkyB01 | 3.40.1780.10 | Alpha Beta › 3-Layer(aba) Sandwich › QueA-like › QueA-like | 0.95 | 85.0 | 8.98e-01 | 99.6% | 100.0% |
| 4pyrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 36.0 | 4.80e-01 | 84.1% | 100.0% |
| 3cs3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 40.0 | 4.87e-01 | 91.2% | 98.6% |
| 4y9tA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 42.0 | 4.73e-01 | 93.4% | 86.9% |
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 39.0 | 4.63e-01 | 92.9% | 92.5% |
| 4zjpA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 40.0 | 4.86e-01 | 93.4% | 100.0% |
| 7x0hC01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 38.0 | 4.79e-01 | 85.8% | 100.0% |
| 2fn8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 41.0 | 4.73e-01 | 92.9% | 93.1% |
| 4yv7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 39.0 | 4.60e-01 | 92.9% | 91.1% |
| 3hs3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 38.0 | 4.63e-01 | 92.5% | 98.6% |
| 3l6uA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 39.0 | 4.75e-01 | 92.5% | 100.0% |
| 4rsmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 39.0 | 4.66e-01 | 85.4% | 96.0% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 38.0 | 4.63e-01 | 91.2% | 99.3% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 39.0 | 4.69e-01 | 83.6% | 96.0% |
| 4yleA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 40.0 | 4.74e-01 | 92.9% | 100.0% |
| 1jx6A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 41.0 | 4.81e-01 | 86.7% | 100.0% |
| 4jc8A01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.60 | 37.0 | 4.56e-01 | 89.4% | 97.8% |
| 3kjxA03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 38.0 | 4.62e-01 | 91.2% | 98.6% |
| 3h75A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 38.0 | 4.62e-01 | 88.9% | 100.0% |
| 4wzzA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 40.0 | 4.59e-01 | 94.2% | 93.7% |
| 4bx8A01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.59 | 35.0 | 4.34e-01 | 89.4% | 93.0% |
| 2h3hB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 40.0 | 4.66e-01 | 88.5% | 98.7% |
| 3m9wA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 40.0 | 4.62e-01 | 88.5% | 96.3% |
| 3mc1A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 35.0 | 4.16e-01 | 92.9% | 88.6% |
| 5ix8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 39.0 | 4.50e-01 | 88.5% | 95.6% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 35.0 | 4.35e-01 | 90.7% | 100.0% |
| 4kyqA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 39.0 | 4.08e-01 | 83.2% | 74.3% |
| 1mdbA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 38.0 | 4.28e-01 | 94.7% | 86.8% |
| 2i6jA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 34.0 | 4.01e-01 | 73.5% | 83.2% |
| 5enzA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 32.0 | 3.68e-01 | 94.2% | 77.0% |
| 4tn5A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 28.0 | 3.85e-01 | 78.8% | 97.3% |
| 2qu7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 30.0 | 3.79e-01 | 79.2% | 89.9% |
| 3zokA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 41.0 | 4.57e-01 | 86.3% | 100.0% |
| 4mj7B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.55 | 28.0 | 3.36e-01 | 86.3% | 69.9% |
| 6gt9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 40.0 | 4.43e-01 | 92.5% | 97.1% |
| 2rjoA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 4.41e-01 | 88.1% | 98.3% |
| 3i0zA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 35.0 | 3.90e-01 | 95.6% | 84.7% |
| 2jh3A02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 30.0 | 3.83e-01 | 89.8% | 99.2% |
| 1mjgM02 | 3.40.50.2030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 34.0 | 3.68e-01 | 92.9% | 78.3% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 30.0 | 3.60e-01 | 78.8% | 84.5% |
| 3kkeB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 30.0 | 3.62e-01 | 79.2% | 86.1% |
| 2bn4A01 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 34.0 | 3.78e-01 | 78.8% | 84.3% |
| 4ru1A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 31.0 | 3.75e-01 | 79.2% | 92.1% |
| 3obwA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 24.0 | 3.28e-01 | 88.9% | 91.2% |
| 3l6uA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 29.0 | 3.75e-01 | 73.9% | 100.0% |
| 1edzA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.50 | 29.0 | 3.58e-01 | 95.1% | 93.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4186559 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.98 | 96.0 | 9.02e-01 | 99.6% | 99.2% |
| 4093202 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.97 | 94.0 | 9.51e-01 | 100.0% | 98.7% |
| 4093192 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.97 | 95.0 | 9.37e-01 | 99.6% | 95.7% |
| 4681637 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.97 | 95.0 | 9.49e-01 | 100.0% | 99.1% |
| 4097908 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.96 | 94.0 | 9.31e-01 | 100.0% | 98.7% |
| 4249703 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.96 | 94.0 | 9.22e-01 | 100.0% | 94.1% |
| 3977078 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.95 | 87.0 | 8.90e-01 | 93.4% | 100.0% |
| 4969220 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.95 | 84.0 | 8.31e-01 | 90.3% | 99.6% |
| 3839930 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.94 | 89.0 | 9.00e-01 | 100.0% | 97.8% |
| 3282744 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.94 | 85.0 | 8.91e-01 | 96.9% | 100.0% |
| 3973311 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.65 | 37.0 | 4.84e-01 | 89.4% | 100.0% |
| 1005403 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.63 | 38.0 | 4.78e-01 | 88.9% | 100.0% |
| 3700091 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.63 | 37.0 | 4.72e-01 | 89.4% | 99.2% |
| 3987929 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.63 | 39.0 | 4.83e-01 | 92.9% | 99.3% |
| 1822362 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.62 | 38.0 | 4.72e-01 | 89.8% | 100.0% |
| 4190437 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.62 | 32.0 | 4.36e-01 | 79.2% | 99.1% |
| 3990119 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.61 | 37.0 | 4.61e-01 | 91.6% | 100.0% |
| 1759439 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.61 | 36.0 | 4.58e-01 | 89.8% | 100.0% |
| 3283354 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.61 | 40.0 | 4.63e-01 | 92.5% | 92.9% |
| 3973683 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.61 | 38.0 | 4.65e-01 | 90.3% | 100.0% |
| 1546769 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.61 | 37.0 | 4.61e-01 | 89.4% | 100.0% |
| 4428241 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.60 | 31.0 | 4.24e-01 | 90.7% | 98.2% |
| 3478241 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.60 | 37.0 | 4.62e-01 | 80.1% | 100.0% |
| 5009435 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.59 | 32.0 | 3.56e-01 | 81.0% | 65.1% |
| 1620688 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.59 | 29.0 | 4.11e-01 | 77.9% | 100.0% |
| 2553177 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.59 | 29.0 | 3.93e-01 | 77.4% | 89.6% |
| 3947156 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.58 | 37.0 | 4.45e-01 | 91.6% | 95.3% |
| 4252996 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.58 | 35.0 | 4.37e-01 | 90.3% | 100.0% |
| 3619194 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.58 | 35.0 | 4.38e-01 | 90.3% | 98.5% |
| 1487352 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.58 | 29.0 | 4.03e-01 | 77.9% | 97.2% |
| 316318 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.58 | 35.0 | 4.02e-01 | 75.7% | 81.4% |
| 3679488 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.57 | 39.0 | 3.88e-01 | 85.0% | 65.1% |
| 1606060 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.57 | 28.0 | 3.98e-01 | 77.4% | 100.0% |
| 3602784 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.57 | 29.0 | 4.00e-01 | 90.3% | 100.0% |
| 3304400 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.57 | 28.0 | 3.92e-01 | 72.6% | 100.0% |
| 4305687 | 2007.1.2.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF3798 | 0.57 | 36.0 | 4.24e-01 | 83.6% | 92.0% |
| 4646247 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.57 | 30.0 | 3.64e-01 | 84.1% | 77.2% |
| 3404752 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.56 | 35.0 | 4.23e-01 | 90.3% | 94.5% |
| 3446318 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.56 | 37.0 | 3.88e-01 | 83.2% | 69.8% |
| 1675787 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.56 | 31.0 | 4.04e-01 | 89.4% | 100.0% |
| 3514944 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.55 | 44.0 | 4.66e-01 | 95.1% | 92.7% |
| 4880190 | 3016.1.1.6 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › DegT_DnrJ_EryC1 | 0.54 | 37.0 | 3.71e-01 | 90.7% | 66.2% |
| 1252842 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.54 | 29.0 | 3.90e-01 | 84.5% | 100.0% |
| 3697706 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.54 | 28.0 | 3.61e-01 | 81.0% | 85.4% |
| 4029374 | 2007.2.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 | 0.53 | 35.0 | 3.88e-01 | 79.2% | 84.0% |
| 4183861 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.51 | 45.0 | 4.19e-01 | 95.1% | 84.8% |
| 3394509 | 2007.1.2.31 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor | 0.51 | 39.0 | 4.35e-01 | 92.0% | 100.0% |
| 4160415 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.51 | 23.0 | 3.24e-01 | 92.9% | 91.6% |
| None | — | 0.51 | 26.0 | 3.33e-01 | 91.2% | 82.2% | |
| 4886529 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.50 | 31.0 | 3.77e-01 | 89.8% | 99.3% |
| 5062998 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.50 | 44.0 | 3.82e-01 | 93.8% | 73.5% |
D2
high
residues 64-144
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02547.21 best | Queuosine_synth | 27.6 | 2.20e-06 | 100.0% | 23.1% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.85 | 77.0 | 7.14e-01 | 97.5% | 84.8% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.74 | 54.0 | 5.23e-01 | 82.7% | 68.9% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.73 | 57.0 | 5.10e-01 | 84.0% | 96.5% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.72 | 51.0 | 4.73e-01 | 74.1% | 65.0% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.71 | 52.0 | 5.51e-01 | 84.0% | 88.7% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 56.0 | 5.26e-01 | 92.6% | 87.3% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 55.0 | 4.81e-01 | 92.6% | 68.8% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.64 | 46.0 | 3.01e-01 | 75.3% | 17.9% |
| 1x53A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 43.0 | 3.73e-01 | 72.8% | 92.4% |
| 3ni8A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 42.0 | 3.56e-01 | 72.8% | 92.1% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 48.0 | 4.77e-01 | 86.4% | 91.6% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 46.0 | 4.70e-01 | 85.2% | 91.1% |
| 1lj5A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.58 | 43.0 | 3.52e-01 | 100.0% | 41.6% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 40.0 | 3.42e-01 | 72.8% | 91.8% |
| 1whoA00 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.57 | 43.0 | 4.17e-01 | 82.7% | 94.7% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 39.0 | 3.32e-01 | 72.8% | 93.7% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 34.0 | 3.99e-01 | 95.1% | 94.3% |
| 4rncA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 41.0 | 2.87e-01 | 80.2% | 42.0% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 4.18e-01 | 98.8% | 92.6% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 4.09e-01 | 98.8% | 92.3% |
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 3.38e-01 | 100.0% | 54.8% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.94e-01 | 100.0% | 84.5% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 37.0 | 2.97e-01 | 71.6% | 59.6% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.96e-01 | 100.0% | 83.8% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.87e-01 | 98.8% | 86.8% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.86e-01 | 100.0% | 86.3% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.91e-01 | 98.8% | 88.7% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.81e-01 | 100.0% | 79.3% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 34.0 | 3.02e-01 | 71.6% | 86.7% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.99e-01 | 96.3% | 100.0% |
| 2bmoA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.50 | 40.0 | 2.76e-01 | 88.9% | 64.6% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.50 | 44.0 | 4.07e-01 | 100.0% | 91.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164932 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.96 | 93.0 | 7.76e-01 | 100.0% | 72.0% |
| 4157526 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.92 | 88.0 | 7.62e-01 | 100.0% | 70.4% |
| 4255707 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.91 | 86.0 | 7.00e-01 | 100.0% | 72.9% |
| 4595973 | 1.1.12.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins | 0.90 | 86.0 | 7.33e-01 | 100.0% | 71.7% |
| 4656452 | 1.1.13.63 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Queuosine_synth | 0.90 | 85.0 | 7.10e-01 | 100.0% | 73.1% |
| 4346748 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.90 | 85.0 | 7.10e-01 | 100.0% | 75.4% |
| 4222919 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.89 | 84.0 | 7.11e-01 | 100.0% | 73.6% |
| 4405204 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.89 | 79.0 | 8.01e-01 | 93.8% | 100.0% |
| 214 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.89 | 78.0 | 8.13e-01 | 96.3% | 98.7% |
| 4056039 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.88 | 83.0 | 7.27e-01 | 100.0% | 71.3% |
| 4631894 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.88 | 83.0 | 7.22e-01 | 100.0% | 70.4% |
| 3977079 | 1.1.12.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins | 0.86 | 80.0 | 7.04e-01 | 100.0% | 74.8% |
| 4271107 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.84 | 79.0 | 6.88e-01 | 100.0% | 73.0% |
| 4300564 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.82 | 76.0 | 6.67e-01 | 100.0% | 69.6% |
| 5078547 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 55.0 | 5.19e-01 | 82.7% | 66.3% |
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.73 | 57.0 | 5.10e-01 | 84.0% | 96.5% |
| 4949095 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.73 | 51.0 | 3.24e-01 | 79.0% | 15.4% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 54.0 | 5.29e-01 | 85.2% | 72.2% |
| None | — | 0.72 | 52.0 | 3.38e-01 | 77.8% | 17.9% | |
| 4194551 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 55.0 | 5.68e-01 | 84.0% | 88.0% |
| 4943228 | 1.1.7.146 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn | 0.71 | 51.0 | 5.59e-01 | 80.2% | 93.8% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 50.0 | 5.43e-01 | 79.0% | 92.3% |
| 4197746 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 56.0 | 5.59e-01 | 86.4% | 82.4% |
| 4245518 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 52.0 | 5.43e-01 | 82.7% | 86.7% |
| 3204011 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 52.0 | 5.07e-01 | 84.0% | 72.2% |
| 5080901 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 54.0 | 5.46e-01 | 90.1% | 85.0% |
| 4060488 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.68 | 56.0 | 5.63e-01 | 90.1% | 90.0% |
| 3960372 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 53.0 | 5.26e-01 | 85.2% | 85.9% |
| 4881914 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.67 | 53.0 | 3.95e-01 | 85.2% | 37.8% |
| 3623819 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 46.0 | 3.13e-01 | 77.8% | 51.5% |
| 3504270 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.63 | 46.0 | 3.10e-01 | 79.0% | 54.0% |
| 3630050 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.63 | 44.0 | 3.55e-01 | 72.8% | 78.1% |
| 3199079 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.62 | 44.0 | 3.63e-01 | 72.8% | 86.2% |
| 3724553 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.62 | 44.0 | 3.56e-01 | 72.8% | 80.6% |
| 4023490 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 43.0 | 3.66e-01 | 72.8% | 89.3% |
| 3479006 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.61 | 43.0 | 3.61e-01 | 72.8% | 86.4% |
| 4030578 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.61 | 43.0 | 3.60e-01 | 72.8% | 92.9% |
| 3292466 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.61 | 43.0 | 3.47e-01 | 72.8% | 83.9% |
| 3561707 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 40.0 | 3.78e-01 | 100.0% | 56.0% |
| 3231177 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.60 | 35.0 | 4.25e-01 | 95.1% | 94.0% |
| 3393297 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 39.0 | 3.98e-01 | 100.0% | 70.0% |
| 3622923 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.55 | 38.0 | 3.02e-01 | 74.1% | 76.3% |
| 3260243 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 4.17e-01 | 85.2% | 96.5% |
| 4995728 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.54 | 46.0 | 3.18e-01 | 95.1% | 43.6% |
| 4671179 | 221.1.2.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT | 0.53 | 41.0 | 3.57e-01 | 82.7% | 55.0% |
| 1066273 | 331.3.1.12 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like | 0.51 | 34.0 | 3.02e-01 | 71.6% | 86.7% |