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CAKLQF020000003.1__CAH1076351.1__SAMEA5780031_00755__00089
Bact-VirCAKLQF020000003.1__CAH1076351.1__SAMEA5780031_00755__00089
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-168
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00185__D61-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12019.14 best | GspH | 25.9 | 1.60e-05 | 93.6% | 81.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.69 | 38.0 | 4.20e-01 | 96.3% | 65.6% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.64 | 59.0 | 5.35e-01 | 100.0% | 81.9% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.57 | 32.0 | 3.18e-01 | 94.5% | 50.8% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 43.0 | 3.05e-01 | 97.2% | 26.9% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 44.0 | 4.17e-01 | 94.5% | 92.4% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.20e-01 | 98.2% | 42.3% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 32.0 | 2.96e-01 | 85.3% | 49.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2538670 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.74 | 35.0 | 4.75e-01 | 84.4% | 88.9% |
| 4368957 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.71 | 66.0 | 5.80e-01 | 100.0% | 75.5% |
| 5054384 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.70 | 36.0 | 4.50e-01 | 94.5% | 78.6% |
| 3983524 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.67 | 62.0 | 5.52e-01 | 99.1% | 83.2% |
| 4207610 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.67 | 62.0 | 5.55e-01 | 100.0% | 82.0% |
| 868467 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.64 | 58.0 | 5.32e-01 | 100.0% | 79.6% |
| 5007358 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 37.0 | 3.52e-01 | 97.2% | 51.2% |
| 5003245 | 243.8.1.0 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein | 0.56 | 30.0 | 3.73e-01 | 84.4% | 82.9% |
| 3929846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 43.0 | 3.16e-01 | 93.6% | 30.5% |
| 3238362 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 38.0 | 2.79e-01 | 98.2% | 25.8% |
| 3786550 | 5.1.4.219 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N | 0.53 | 41.0 | 2.74e-01 | 98.2% | 19.8% |
| 4647210 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.52 | 44.0 | 2.91e-01 | 93.6% | 37.8% |
| 3391005 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 43.0 | 3.07e-01 | 93.6% | 39.1% |
D2
medium
residues 8-59
Domain cluster:
representative