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CAKLQF020000003.1__CAH1076462.1__SAMEA5780031_00792__00126
Bact-VirCAKLQF020000003.1__CAH1076462.1__SAMEA5780031_00792__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-55_99-122
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u50C02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 24.0 | 3.08e-01 | 97.3% | 71.4% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.52 | 42.0 | 4.33e-01 | 95.9% | 98.5% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 34.0 | 3.46e-01 | 87.7% | 70.3% |
| 3kenA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.50 | 44.0 | 2.89e-01 | 100.0% | 90.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3556873 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.75 | 34.0 | 3.35e-01 | 100.0% | 40.0% |
| 3819232 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.75 | 34.0 | 4.12e-01 | 100.0% | 64.0% |
| 4030189 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.73 | 34.0 | 3.73e-01 | 100.0% | 53.3% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.72 | 33.0 | 3.44e-01 | 100.0% | 45.7% |
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.71 | 34.0 | 3.17e-01 | 100.0% | 36.7% |
| 4028249 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.71 | 33.0 | 3.81e-01 | 100.0% | 59.3% |
| 3205535 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.70 | 34.0 | 3.33e-01 | 100.0% | 42.3% |
| 5025800 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.60 | 37.0 | 3.13e-01 | 98.6% | 38.3% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.58 | 40.0 | 3.10e-01 | 78.1% | 32.7% |
| 4563102 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 40.0 | 3.39e-01 | 80.8% | 50.4% |
| 3417232 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.53 | 43.0 | 3.81e-01 | 97.3% | 92.5% |
| 4011521 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 34.0 | 3.41e-01 | 93.2% | 64.0% |
| 3397621 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.51 | 31.0 | 3.45e-01 | 89.0% | 86.0% |
| 3708366 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.51 | 42.0 | 3.35e-01 | 94.5% | 55.0% |
D2
medium
residues 56-98_123-154
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03734.20 best | YkuD | 28.7 | 2.50e-06 | 49.3% | 22.4% |