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CAKLQF020000003.1__CAH1076486.1__SAMEA5780031_00806__00134
Bact-VirCAKLQF020000003.1__CAH1076486.1__SAMEA5780031_00806__00134
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 84-143
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01235.24 best | Na_Ala_symp | 107.9 | 1.10e-30 | 100.0% | 14.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fx5A03 | 1.20.120.1690 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 44.0 | 3.69e-01 | 78.3% | 38.0% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.66 | 53.0 | 3.83e-01 | 90.0% | 52.8% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 39.0 | 2.61e-01 | 71.7% | 16.9% |
| 2uv8A05 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 51.0 | 2.88e-01 | 96.7% | 37.0% |
| 3o8oA03 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 3.09e-01 | 93.3% | 37.9% |
| 2lc0A00 | 3.30.2320.60 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) | 0.53 | 48.0 | 3.69e-01 | 100.0% | 83.3% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.23e-01 | 78.3% | 73.8% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 33.0 | 2.32e-01 | 70.0% | 67.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963808 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.81 | 54.0 | 3.97e-01 | 70.0% | 41.9% |
| 4018916 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.71 | 61.0 | 3.63e-01 | 100.0% | 48.1% |
| 3692208 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.69 | 55.0 | 3.52e-01 | 86.7% | 23.2% |
| 3217457 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.66 | 48.0 | 4.25e-01 | 78.3% | 53.3% |
| 3936248 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 44.0 | 3.82e-01 | 70.0% | 91.6% |
| 3392962 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.62 | 38.0 | 2.69e-01 | 75.0% | 18.0% |
| 3641227 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 46.0 | 4.33e-01 | 83.3% | 68.0% |
| 3491623 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 46.0 | 3.70e-01 | 88.3% | 50.4% |
| 3992156 | 109.4.1.2569 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_M, RICTOR_V | 0.59 | 46.0 | 2.89e-01 | 91.7% | 17.9% |
| 3199801 | 5001.1.1.144 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo | 0.58 | 47.0 | 2.92e-01 | 95.0% | 73.7% |
| 3430178 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.58 | 50.0 | 3.63e-01 | 100.0% | 38.9% |
| 3589150 | 2498.1.1.7 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N | 0.57 | 47.0 | 2.72e-01 | 95.0% | 9.8% |
| None | — | 0.54 | 38.0 | 2.79e-01 | 80.0% | 62.0% | |
| 3399010 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.52 | 46.0 | 2.91e-01 | 100.0% | 55.9% |
| 3669948 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.52 | 43.0 | 2.47e-01 | 95.0% | 22.9% |
D2
medium
residues 144-198
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01235.24 best | Na_Ala_symp | 32.9 | 6.40e-08 | 96.4% | 11.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 56.0 | 5.16e-01 | 76.4% | 57.7% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 5.03e-01 | 74.5% | 67.2% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.74 | 59.0 | 4.38e-01 | 89.1% | 34.0% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.72 | 47.0 | 2.98e-01 | 70.9% | 13.8% |
| 7oui401 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.69 | 52.0 | 3.58e-01 | 83.6% | 31.3% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 51.0 | 4.70e-01 | 83.6% | 68.5% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 49.0 | 4.71e-01 | 81.8% | 72.7% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 45.0 | 4.28e-01 | 74.5% | 64.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.61 | 43.0 | 3.87e-01 | 76.4% | 67.5% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 43.0 | 2.78e-01 | 80.0% | 69.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083829 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.86 | 67.0 | 5.63e-01 | 89.1% | 51.1% |
| 3974470 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 65.0 | 5.93e-01 | 90.9% | 81.4% |
| 3472728 | 5051.1.1.3 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF | 0.76 | 65.0 | 4.01e-01 | 100.0% | 16.3% |
| 4973801 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.73 | 63.0 | 4.72e-01 | 96.4% | 59.3% |
| 3369421 | 4970.1.1.8 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DUF1744 | 0.61 | 42.0 | 3.54e-01 | 72.7% | 48.4% |