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CAKLQF020000003.1__CAH1076538.1__SAMEA5780031_00830__00158
Bact-VirCAKLQF020000003.1__CAH1076538.1__SAMEA5780031_00830__00158
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-66
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 56.0 | 5.40e-01 | 93.9% | 80.5% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 55.0 | 5.54e-01 | 92.4% | 89.6% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 50.0 | 4.83e-01 | 92.4% | 76.3% |
| 3fmyA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 48.0 | 4.83e-01 | 92.4% | 97.0% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 42.0 | 4.27e-01 | 93.9% | 78.1% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 49.0 | 4.60e-01 | 95.5% | 77.8% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 49.0 | 4.64e-01 | 95.5% | 81.5% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 44.0 | 3.92e-01 | 95.5% | 58.6% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 42.0 | 3.85e-01 | 89.4% | 68.5% |
| 1b63A02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 41.0 | 3.43e-01 | 84.8% | 57.9% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 38.0 | 3.82e-01 | 77.3% | 95.5% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 2.89e-01 | 74.2% | 78.0% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 42.0 | 3.41e-01 | 93.9% | 92.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3291627 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.93 | 82.0 | 5.57e-01 | 93.9% | 30.7% |
| 3967389 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.91 | 77.0 | 5.28e-01 | 89.4% | 29.5% |
| 3286211 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.91 | 78.0 | 8.13e-01 | 92.4% | 100.0% |
| 3956964 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.91 | 75.0 | 5.12e-01 | 87.9% | 28.8% |
| 3285963 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.90 | 71.0 | 4.92e-01 | 83.3% | 28.7% |
| 3283971 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.88 | 75.0 | 5.16e-01 | 90.9% | 30.0% |
| 3971201 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.88 | 76.0 | 5.27e-01 | 93.9% | 31.0% |
| 3973671 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.87 | 74.0 | 5.13e-01 | 92.4% | 31.0% |
| 3967094 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.86 | 74.0 | 5.15e-01 | 93.9% | 31.0% |
| 3973641 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.85 | 70.0 | 4.87e-01 | 87.9% | 29.7% |
| 3968730 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.84 | 67.0 | 4.68e-01 | 84.8% | 28.7% |
| 3967135 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.83 | 71.0 | 4.97e-01 | 93.9% | 30.2% |
| 2330628 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.77 | 64.0 | 4.65e-01 | 93.9% | 35.7% |
| 7178 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.76 | 63.0 | 4.56e-01 | 93.9% | 35.1% |
| 3282308 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.69 | 57.0 | 5.62e-01 | 100.0% | 87.1% |
| 3531695 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 57.0 | 4.53e-01 | 95.5% | 62.2% |
| 4460243 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.66 | 50.0 | 5.38e-01 | 89.4% | 100.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 44.0 | 3.76e-01 | 74.2% | 82.9% |
| 4286215 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 47.0 | 4.78e-01 | 92.4% | 86.2% |
| 4127906 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.60 | 44.0 | 4.68e-01 | 93.9% | 94.5% |
| 4200532 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.60 | 43.0 | 3.96e-01 | 75.8% | 71.8% |
| 4022186 | 101.1.4.58 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF7726 | 0.59 | 45.0 | 4.68e-01 | 86.4% | 100.0% |
| 4660026 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.59 | 50.0 | 4.53e-01 | 98.5% | 79.6% |
| 3279916 | 633.21.1.34 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7144 | 0.58 | 49.0 | 4.12e-01 | 95.5% | 87.0% |
| 4588355 | 2003.1.2.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 48.0 | 3.21e-01 | 100.0% | 56.5% |
| 5042171 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.53 | 42.0 | 3.57e-01 | 97.0% | 51.8% |
| 5057376 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 41.0 | 3.81e-01 | 97.0% | 65.9% |
| 3935014 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.53 | 39.0 | 3.27e-01 | 93.9% | 44.2% |
| 3506141 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 40.0 | 4.01e-01 | 87.9% | 82.9% |
D2
medium
residues 67-228
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12625.13 best | Arabinose_bd | 45.5 | 1.30e-11 | 84.0% | 73.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vgyA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 41.0 | 3.50e-01 | 79.6% | 90.4% |
| 7nn3B01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 3.15e-01 | 79.6% | 91.8% |
| 4zm3B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 30.0 | 3.22e-01 | 74.7% | 63.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955346 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.88 | 73.0 | 6.72e-01 | 85.8% | 71.0% |
| 3972629 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.88 | 72.0 | 6.68e-01 | 86.4% | 70.3% |
| 3973641 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.87 | 70.0 | 6.55e-01 | 84.0% | 70.3% |
| 3283971 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.86 | 71.0 | 6.50e-01 | 84.6% | 70.0% |
| 3972907 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.86 | 71.0 | 6.55e-01 | 85.8% | 71.0% |
| 3968730 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.85 | 70.0 | 6.55e-01 | 85.2% | 71.3% |
| 3282198 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.85 | 71.0 | 6.56e-01 | 86.4% | 70.5% |
| 3954965 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.85 | 71.0 | 6.55e-01 | 86.4% | 70.0% |
| 3279706 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.85 | 71.0 | 6.45e-01 | 86.4% | 70.2% |
| 3291627 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.85 | 71.0 | 6.49e-01 | 87.0% | 69.3% |
| 3281241 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.84 | 68.0 | 6.30e-01 | 84.0% | 70.0% |
| 3967135 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.84 | 70.0 | 6.37e-01 | 86.4% | 69.8% |
| 3973671 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.83 | 68.0 | 6.29e-01 | 84.6% | 69.0% |
| 3967389 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.83 | 69.0 | 6.38e-01 | 86.4% | 70.5% |
| 3968949 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.82 | 66.0 | 6.25e-01 | 86.4% | 71.1% |
| 3969599 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.82 | 69.0 | 6.35e-01 | 87.0% | 70.5% |
| 3286221 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.82 | 63.0 | 6.76e-01 | 79.6% | 92.1% |
| 3967094 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.82 | 67.0 | 6.17e-01 | 85.2% | 69.5% |
| 3288503 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.81 | 65.0 | 6.03e-01 | 84.0% | 69.0% |
| 1839953 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.80 | 66.0 | 6.26e-01 | 86.4% | 76.7% |
| 3956964 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.79 | 65.0 | 6.00e-01 | 87.0% | 72.2% |
| 3284448 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.78 | 64.0 | 5.99e-01 | 85.2% | 71.3% |
| 3971201 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.78 | 65.0 | 5.97e-01 | 85.8% | 98.5% |
| 3971393 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.77 | 64.0 | 5.97e-01 | 87.0% | 99.5% |
| 3285963 | 873.1.1.7 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd | 0.74 | 61.0 | 5.69e-01 | 86.4% | 71.3% |
| 3526593 | 2007.9.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › IL17_R_N | 0.60 | 28.0 | 3.76e-01 | 77.8% | 82.4% |
| 5017105 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 44.0 | 4.48e-01 | 81.5% | 91.3% |
| 3974795 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 26.0 | 3.42e-01 | 76.5% | 77.6% |
| 5071258 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 43.0 | 3.91e-01 | 81.5% | 65.1% |
| 3914701 | 11.1.1.129 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind | 0.52 | 27.0 | 3.26e-01 | 77.2% | 72.7% |
D3
medium
residues 229-342
Domain cluster:
rep: CAKLQF020000010.1__CAH1085041.1__SAMEA5780031_02143__00088__D216-325
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12833.14 best | HTH_18 | 66.5 | 2.90e-18 | 69.3% | 97.5% |
| PF00165.30 | HTH_AraC | 39.9 | 4.80e-10 | 36.8% | 78.6% |