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CAKLQF020000003.1__CAH1076674.1__SAMEA5780031_00899__00226
Bact-VirCAKLQF020000003.1__CAH1076674.1__SAMEA5780031_00899__00226
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-191_302-332
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00095__D8-178_280-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00579.32 best | tRNA-synt_1b | 124.5 | 7.90e-36 | 92.5% | 62.0% |
D2
high
residues 204-300
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00579.32 best | tRNA-synt_1b | 34.8 | 1.70e-08 | 89.7% | 30.8% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.95 | 78.0 | 8.00e-01 | 100.0% | 88.3% |
| 6ncrA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.94 | 90.0 | 8.65e-01 | 100.0% | 89.8% |
| 3tzlA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.91 | 84.0 | 8.17e-01 | 100.0% | 90.4% |
| 3a04A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.91 | 86.0 | 8.00e-01 | 100.0% | 87.9% |
| 2g36A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.90 | 85.0 | 8.25e-01 | 100.0% | 91.6% |
| 3hv0A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.90 | 83.0 | 7.81e-01 | 96.9% | 84.8% |
| 3tzeA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.88 | 81.0 | 7.80e-01 | 99.0% | 87.0% |
| 5tevB02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.88 | 79.0 | 7.78e-01 | 100.0% | 90.3% |
| 2dlcX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.84 | 78.0 | 7.01e-01 | 96.9% | 88.9% |
| 2cyaA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.83 | 79.0 | 7.19e-01 | 100.0% | 82.1% |
| 2j5bA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.78 | 74.0 | 6.76e-01 | 100.0% | 83.5% |
| 1i6kA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.78 | 72.0 | 6.91e-01 | 100.0% | 87.4% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.77 | 70.0 | 6.72e-01 | 100.0% | 86.5% |
| 2yy5A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.75 | 70.0 | 6.48e-01 | 100.0% | 89.9% |
| 3d19B00 | 1.20.1260.120 | Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 | 0.59 | 41.0 | 3.09e-01 | 72.2% | 36.6% |
| 3g7pA00 | 1.10.3100.20 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 | 0.57 | 42.0 | 3.71e-01 | 78.4% | 95.2% |
| 2ou6A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.57 | 46.0 | 3.79e-01 | 88.7% | 62.3% |
| 2o70B00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.56 | 45.0 | 3.83e-01 | 87.6% | 87.2% |
| 1q5nA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.55 | 47.0 | 3.59e-01 | 96.9% | 88.5% |
| 1h1oA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.54 | 32.0 | 3.62e-01 | 91.8% | 77.3% |
| 3fhnA02 | 1.20.58.1420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B | 0.53 | 37.0 | 3.50e-01 | 93.8% | 59.8% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.52 | 43.0 | 4.01e-01 | 89.7% | 84.9% |
| 5ljmA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 42.0 | 3.39e-01 | 94.8% | 72.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4469624 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.97 | 94.0 | 6.07e-01 | 100.0% | 27.7% |
| 4671800 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.95 | 92.0 | 6.00e-01 | 100.0% | 28.5% |
| 3933178 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.91 | 86.0 | 5.55e-01 | 100.0% | 26.8% |
| 3797510 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.91 | 86.0 | 5.52e-01 | 100.0% | 26.2% |
| 5077374 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 86.0 | 5.55e-01 | 100.0% | 32.5% |
| 2126485 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 85.0 | 5.73e-01 | 100.0% | 30.5% |
| 4015705 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.90 | 85.0 | 5.43e-01 | 100.0% | 25.2% |
| 5027854 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 85.0 | 5.52e-01 | 100.0% | 27.9% |
| 387721 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.90 | 82.0 | 5.51e-01 | 100.0% | 29.5% |
| 3701871 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.89 | 84.0 | 5.32e-01 | 100.0% | 24.5% |
| 1260984 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.89 | 84.0 | 5.34e-01 | 100.0% | 24.9% |
| 4133327 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.89 | 84.0 | 5.42e-01 | 100.0% | 26.8% |
| 3703161 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.89 | 83.0 | 6.05e-01 | 100.0% | 42.9% |
| 5003581 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.88 | 83.0 | 5.29e-01 | 100.0% | 25.4% |
| 5058738 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.88 | 82.0 | 5.38e-01 | 99.0% | 28.9% |
| 5053430 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.87 | 82.0 | 5.39e-01 | 100.0% | 29.0% |
| 3890206 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.87 | 82.0 | 5.61e-01 | 100.0% | 87.7% |
| 4023690 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.85 | 80.0 | 5.20e-01 | 100.0% | 30.2% |
| 5048102 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.84 | 80.0 | 5.31e-01 | 100.0% | 32.7% |
| 4971292 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.82 | 78.0 | 6.18e-01 | 100.0% | 60.6% |
| 4664989 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.79 | 74.0 | 4.93e-01 | 100.0% | 29.6% |
| 4001700 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 73.0 | 4.72e-01 | 100.0% | 25.2% |
| 3651640 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.78 | 72.0 | 4.77e-01 | 100.0% | 26.9% |
| 4242190 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 72.0 | 5.71e-01 | 100.0% | 52.4% |
| 4357984 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.77 | 72.0 | 4.83e-01 | 100.0% | 29.0% |
| 4946411 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.60 | 41.0 | 3.60e-01 | 71.1% | 77.3% |
| 3591756 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.59 | 49.0 | 4.48e-01 | 93.8% | 99.3% |
| 3738845 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.52 | 36.0 | 4.01e-01 | 100.0% | 97.3% |