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CAKLQF020000004.1__CAH1076685.1__SAMEA5780031_00910__00008
Bact-VirCAKLQF020000004.1__CAH1076685.1__SAMEA5780031_00910__00008
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-74_139-220
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pqxA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.83 | 78.0 | 5.98e-01 | 100.0% | 94.7% |
| 1iqqA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.83 | 76.0 | 6.20e-01 | 96.6% | 99.0% |
| 1sglA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.78 | 74.0 | 6.00e-01 | 100.0% | 98.1% |
| 3t0oA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.77 | 73.0 | 6.03e-01 | 100.0% | 99.0% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 38.0 | 4.00e-01 | 92.4% | 72.4% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 37.0 | 3.74e-01 | 92.4% | 63.4% |
| 3esmA00 | 2.60.40.2230 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 | 0.57 | 32.0 | 3.07e-01 | 100.0% | 47.8% |
| 4dzdA01 | 3.30.70.1200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 | 0.57 | 28.0 | 3.44e-01 | 82.2% | 75.7% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.69e-01 | 98.3% | 86.5% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.44e-01 | 100.0% | 63.8% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 35.0 | 3.25e-01 | 91.5% | 51.4% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.53 | 33.0 | 3.80e-01 | 99.2% | 85.9% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 33.0 | 3.72e-01 | 98.3% | 80.9% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.53 | 25.0 | 3.02e-01 | 84.7% | 66.2% |
| 1z2zA02 | 3.30.70.3160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 4.06e-01 | 90.7% | 91.1% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 4.05e-01 | 100.0% | 95.4% |
| 3hi9D00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 32.0 | 3.68e-01 | 100.0% | 87.8% |
| 4ndhB00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 39.0 | 3.44e-01 | 81.4% | 75.8% |
| 2e9wA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 31.0 | 3.34e-01 | 98.3% | 71.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998129 | 280.1.1.1 ↗ | a+b two layers › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease_T2 | 0.85 | 79.0 | 6.74e-01 | 97.5% | 100.0% |
| 3671146 | 280.1.1.1 ↗ | a+b two layers › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease_T2 | 0.83 | 77.0 | 6.21e-01 | 97.5% | 95.6% |
| 166771 | 280.1.1.1 ↗ | a+b two layers › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease_T2 | 0.82 | 78.0 | 5.96e-01 | 100.0% | 94.7% |
| 4854085 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.60 | 39.0 | 4.00e-01 | 91.5% | 68.1% |
| 3592492 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.59 | 39.0 | 3.85e-01 | 92.4% | 62.4% |
| 4182510 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.59 | 36.0 | 4.02e-01 | 81.4% | 78.9% |
| 3671807 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.58 | 29.0 | 3.44e-01 | 81.4% | 68.8% |
| 4108772 | 243.3.1.10 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 | 0.58 | 33.0 | 4.05e-01 | 91.5% | 89.3% |
| 3394795 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 35.0 | 4.30e-01 | 97.5% | 96.0% |
| 5037322 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.57 | 38.0 | 3.95e-01 | 93.2% | 72.7% |
| 4932682 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.57 | 38.0 | 3.81e-01 | 91.5% | 66.7% |
| 4247992 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.56 | 29.0 | 3.36e-01 | 80.5% | 67.1% |
| 4976949 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.55 | 32.0 | 3.62e-01 | 99.2% | 77.6% |
| 3726634 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 31.0 | 3.61e-01 | 99.2% | 86.3% |
| None | — | 0.51 | 36.0 | 2.80e-01 | 72.9% | 80.7% | |
| 4988082 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 26.0 | 3.24e-01 | 79.7% | 81.4% |
| 3813777 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.51 | 38.0 | 4.02e-01 | 99.2% | 88.6% |
| 3672759 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.50 | 34.0 | 3.34e-01 | 100.0% | 64.0% |
| 4987232 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.50 | 36.0 | 3.08e-01 | 97.5% | 47.0% |
D2
medium
residues 75-138
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.75 | 30.0 | 3.47e-01 | 100.0% | 48.9% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.69 | 28.0 | 2.46e-01 | 100.0% | 26.1% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 43.0 | 3.81e-01 | 75.0% | 50.5% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 4.08e-01 | 100.0% | 76.0% |
| 1mqsA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.61 | 41.0 | 3.33e-01 | 70.3% | 81.3% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 40.0 | 4.35e-01 | 79.7% | 84.6% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 43.0 | 3.40e-01 | 87.5% | 87.4% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 38.0 | 4.19e-01 | 73.4% | 97.9% |
| 3qygB01 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.55 | 43.0 | 3.62e-01 | 90.6% | 74.6% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 26.0 | 2.90e-01 | 98.4% | 55.8% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 37.0 | 3.72e-01 | 79.7% | 71.6% |
| 1h1oA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 35.0 | 3.41e-01 | 70.3% | 93.3% |
| 1kv9A02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 40.0 | 3.56e-01 | 89.1% | 72.8% |
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 37.0 | 3.77e-01 | 76.6% | 79.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4644472 | 280.1.1.1 ↗ | a+b two layers › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease Rh-like › Ribonuclease_T2 | 0.77 | 69.0 | 4.92e-01 | 100.0% | 34.6% |
| 5076741 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.68 | 37.0 | 4.19e-01 | 100.0% | 70.0% |
| 3751844 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 41.0 | 3.55e-01 | 100.0% | 45.3% |
| 5030106 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.61 | 36.0 | 3.91e-01 | 100.0% | 70.9% |
| 4465202 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.58 | 43.0 | 4.59e-01 | 85.9% | 92.7% |
| 3991136 | 103.1.1.17 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_6 | 0.57 | 37.0 | 3.92e-01 | 78.1% | 76.4% |
| 3797568 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 36.0 | 3.77e-01 | 100.0% | 70.0% |
| 4514726 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.55 | 40.0 | 3.99e-01 | 81.2% | 76.9% |
| 3887944 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.53 | 48.0 | 3.92e-01 | 100.0% | 70.4% |
| 3640035 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 33.0 | 3.00e-01 | 100.0% | 47.1% |
| 3677168 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 42.0 | 3.30e-01 | 95.3% | 91.0% |
| 1030234 | 103.1.1.21 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID | 0.52 | 37.0 | 3.77e-01 | 76.6% | 79.0% |