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CAKLQF020000004.1__CAH1076690.1__SAMEA5780031_00915__00013
Bact-VirCAKLQF020000004.1__CAH1076690.1__SAMEA5780031_00915__00013
Identity
- Kingdom:
- phage
Quality
74.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 178-293
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13103.12 best | TonB_2 | 28.3 | 2.20e-06 | 75.9% | 89.4% |
| PF03544.20 | TonB_C | 51.5 | 1.60e-13 | 69.8% | 97.5% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u07B00 | 3.30.2420.10 | Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB | 0.83 | 58.0 | 6.60e-01 | 85.3% | 94.3% |
| 2k9kA00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.78 | 59.0 | 6.14e-01 | 91.4% | 85.8% |
| 1lr0A00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.77 | 66.0 | 6.40e-01 | 93.1% | 82.5% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.72 | 57.0 | 6.07e-01 | 90.5% | 95.1% |
| 1s62A00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.72 | 54.0 | 5.76e-01 | 93.1% | 89.2% |
| 2m2kA00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.65 | 52.0 | 5.06e-01 | 86.2% | 77.9% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.57 | 40.0 | 3.33e-01 | 97.4% | 40.3% |
| 3qtaB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.57 | 47.0 | 3.97e-01 | 89.7% | 86.4% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 39.0 | 3.47e-01 | 72.4% | 87.1% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.54 | 46.0 | 4.49e-01 | 93.1% | 84.9% |
| 4hesA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 37.0 | 2.86e-01 | 70.7% | 99.3% |
| 4le5A02 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.53 | 41.0 | 3.90e-01 | 81.9% | 99.3% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 35.0 | 3.33e-01 | 100.0% | 57.0% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.51 | 42.0 | 3.63e-01 | 94.0% | 89.8% |
| 3fwlA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 39.0 | 2.70e-01 | 81.0% | 85.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972969 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.98 | 79.0 | 8.74e-01 | 81.9% | 100.0% |
| 4628638 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.94 | 71.0 | 8.10e-01 | 87.9% | 100.0% |
| 3964903 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.89 | 57.0 | 7.06e-01 | 87.9% | 100.0% |
| 4096220 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.89 | 70.0 | 7.69e-01 | 87.1% | 98.9% |
| 3385499 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.89 | 70.0 | 7.74e-01 | 82.8% | 100.0% |
| 4289847 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.88 | 70.0 | 7.73e-01 | 83.6% | 100.0% |
| 4324302 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.85 | 57.0 | 6.82e-01 | 71.6% | 100.0% |
| 2599555 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.84 | 69.0 | 7.20e-01 | 92.2% | 92.5% |
| 2899924 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.84 | 57.0 | 6.54e-01 | 81.9% | 92.0% |
| 4549660 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.84 | 57.0 | 6.85e-01 | 74.1% | 100.0% |
| 3970711 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.84 | 62.0 | 7.05e-01 | 84.5% | 100.0% |
| 4338610 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.84 | 56.0 | 6.68e-01 | 81.0% | 100.0% |
| 3166161 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.83 | 59.0 | 6.88e-01 | 80.2% | 100.0% |
| 3840130 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.83 | 59.0 | 6.81e-01 | 81.9% | 100.0% |
| 3974767 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.81 | 64.0 | 7.01e-01 | 93.1% | 100.0% |
| 3839673 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.80 | 69.0 | 7.07e-01 | 89.7% | 99.1% |
| 2391752 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.79 | 63.0 | 6.76e-01 | 94.8% | 97.0% |
| 3967921 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.79 | 54.0 | 6.33e-01 | 75.0% | 100.0% |
| 3968588 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.79 | 56.0 | 6.46e-01 | 80.2% | 100.0% |
| 3942685 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.78 | 57.0 | 6.01e-01 | 82.8% | 82.9% |
| 5945 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.77 | 66.0 | 6.40e-01 | 93.1% | 82.5% |
| 4636115 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.77 | 55.0 | 6.24e-01 | 78.4% | 100.0% |
| 1161117 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.75 | 55.0 | 6.10e-01 | 90.5% | 95.7% |
| 152223 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.72 | 57.0 | 6.07e-01 | 90.5% | 95.1% |
| 1318719 | 272.2.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › hypothetical protein BACUNI_01052 › hypothetical protein BACUNI_01052 › DUF5043 | 0.66 | 58.0 | 5.11e-01 | 98.3% | 68.0% |
| 3970590 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.66 | 54.0 | 5.51e-01 | 91.4% | 91.8% |
| 1393818 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.65 | 51.0 | 5.41e-01 | 87.9% | 96.1% |
| 3516524 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.63 | 53.0 | 4.92e-01 | 91.4% | 89.7% |
| None | — | 0.59 | 40.0 | 3.10e-01 | 70.7% | 85.3% | |
| 5076068 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.58 | 36.0 | 3.75e-01 | 96.6% | 67.6% |
| 3968389 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.58 | 33.0 | 3.50e-01 | 87.1% | 63.0% |
| 4011496 | 4019.1.1.0 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins | 0.56 | 43.0 | 3.04e-01 | 81.0% | 100.0% |
| 3166061 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.56 | 40.0 | 2.98e-01 | 73.3% | 75.4% |
| 1117716 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.54 | 46.0 | 4.49e-01 | 93.1% | 84.9% |
| 3969073 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.53 | 38.0 | 3.26e-01 | 74.1% | 84.2% |
| 3838610 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.52 | 39.0 | 3.04e-01 | 78.4% | 93.1% |
| 1117634 | 264.1.1.8 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg | 0.51 | 42.0 | 3.51e-01 | 94.0% | 81.7% |
| 4960551 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 33.0 | 3.13e-01 | 96.6% | 53.6% |
| 4972247 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 35.0 | 3.45e-01 | 71.6% | 100.0% |
| 4928738 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 34.0 | 3.33e-01 | 97.4% | 62.5% |
D2
medium
residues 111-176
Domain cluster:
representative