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CAKLQF020000004.1__CAH1076708.1__SAMEA5780031_00937__00031
Bact-VirCAKLQF020000004.1__CAH1076708.1__SAMEA5780031_00937__00031
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-187
Domain cluster:
rep: IMGVR_UViG_3300008007_000865-3300008007-Ga0100386_1000016247__D1-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01694.29 best | Rhomboid | 50.7 | 3.10e-13 | 91.3% | 96.5% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nr9A00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.81 | 74.0 | 6.97e-01 | 100.0% | 81.2% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 34.0 | 4.26e-01 | 82.0% | 90.7% |
| 2hqcA01 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.57 | 50.0 | 4.66e-01 | 94.4% | 88.6% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 39.0 | 3.78e-01 | 84.5% | 62.0% |
| 1e94E03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 33.0 | 3.95e-01 | 92.5% | 90.6% |
| 1eq1A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.53 | 34.0 | 3.44e-01 | 88.8% | 61.4% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.53 | 36.0 | 3.07e-01 | 97.5% | 41.0% |
| 6mzbB03 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.53 | 47.0 | 3.72e-01 | 100.0% | 75.8% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 43.0 | 3.72e-01 | 91.9% | 81.2% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 44.0 | 3.63e-01 | 93.8% | 58.0% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.87 | 77.0 | 6.85e-01 | 100.0% | 68.2% |
| 3934092 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.84 | 73.0 | 7.01e-01 | 100.0% | 81.1% |
| 4615926 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 74.0 | 7.08e-01 | 96.3% | 82.2% |
| 4988448 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 72.0 | 6.98e-01 | 98.1% | 82.9% |
| 5011657 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 76.0 | 7.41e-01 | 97.5% | 90.3% |
| 4946808 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 73.0 | 6.75e-01 | 98.8% | 76.9% |
| 4032972 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 73.0 | 6.83e-01 | 98.1% | 78.9% |
| 3577038 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 77.0 | 6.69e-01 | 100.0% | 75.2% |
| 3969883 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 76.0 | 6.96e-01 | 100.0% | 84.9% |
| 3988861 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 77.0 | 6.86e-01 | 100.0% | 74.9% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 77.0 | 7.35e-01 | 100.0% | 89.4% |
| 4030274 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 73.0 | 7.10e-01 | 96.9% | 87.9% |
| 4947427 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.80 | 74.0 | 6.21e-01 | 96.9% | 91.0% |
| 5080196 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.76e-01 | 100.0% | 79.1% |
| 3392721 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.52e-01 | 100.0% | 71.7% |
| 5053424 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 73.0 | 6.93e-01 | 100.0% | 83.7% |
| 3238747 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 71.0 | 6.80e-01 | 100.0% | 82.8% |
| 3399386 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 75.0 | 7.07e-01 | 99.4% | 84.2% |
| 3631632 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.36e-01 | 100.0% | 68.2% |
| 5082662 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.81e-01 | 99.4% | 80.5% |
| 3525978 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 72.0 | 6.92e-01 | 98.1% | 84.4% |
| 3590444 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.65e-01 | 100.0% | 72.0% |
| 4989317 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.80 | 76.0 | 6.30e-01 | 100.0% | 90.4% |
| 3643677 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 74.0 | 6.31e-01 | 98.1% | 64.9% |
| 4942136 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 75.0 | 7.14e-01 | 99.4% | 86.5% |
| 3194621 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 75.0 | 6.17e-01 | 100.0% | 61.9% |
| 3491023 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 6.32e-01 | 100.0% | 72.4% |
| 4027249 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 73.0 | 6.40e-01 | 100.0% | 69.8% |
| 3241943 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 6.60e-01 | 100.0% | 75.9% |
| 5066829 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 6.71e-01 | 99.4% | 87.1% |
| 3379646 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 75.0 | 6.18e-01 | 100.0% | 67.9% |
| 3923227 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 6.94e-01 | 99.4% | 84.2% |
| 4928786 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 6.64e-01 | 100.0% | 84.2% |
| 3248617 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 74.0 | 6.48e-01 | 100.0% | 72.4% |
| 5078124 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 74.0 | 7.11e-01 | 100.0% | 91.7% |
| 4024520 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 73.0 | 6.32e-01 | 100.0% | 68.7% |
| 3265701 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 71.0 | 6.70e-01 | 96.9% | 90.5% |
| 5014154 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 73.0 | 6.89e-01 | 100.0% | 87.9% |
| 3690311 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 72.0 | 6.27e-01 | 99.4% | 90.6% |
| 4978747 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 71.0 | 6.87e-01 | 98.8% | 89.1% |
| 4942502 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 72.0 | 6.54e-01 | 99.4% | 79.5% |
| 3742842 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 72.0 | 6.65e-01 | 100.0% | 81.5% |
| 5068311 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 60.0 | 5.91e-01 | 99.4% | 77.1% |
| 3204146 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 70.0 | 6.30e-01 | 98.1% | 74.4% |
| 3830489 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.75 | 69.0 | 6.46e-01 | 98.1% | 86.2% |
| 3724336 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.75 | 70.0 | 6.06e-01 | 99.4% | 68.8% |
| 4029585 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.75 | 70.0 | 6.37e-01 | 100.0% | 77.6% |
| 4025642 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.72 | 67.0 | 6.35e-01 | 99.4% | 91.1% |
| 5057844 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.67 | 46.0 | 5.13e-01 | 72.0% | 88.8% |
| 3590527 | 4953.1.1.6 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF2512 | 0.58 | 39.0 | 4.53e-01 | 70.8% | 99.1% |
| 5024540 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 39.0 | 4.10e-01 | 89.4% | 75.9% |
| 3283570 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.56 | 38.0 | 4.05e-01 | 70.8% | 77.2% |
| 3933507 | 5001.1.1.32 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a | 0.52 | 36.0 | 2.96e-01 | 70.8% | 78.0% |
| 3788975 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 41.0 | 2.84e-01 | 84.5% | 76.4% |