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CAKLQF020000004.1__CAH1076715.1__SAMEA5780031_00944__00038
Bact-VirCAKLQF020000004.1__CAH1076715.1__SAMEA5780031_00944__00038
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-115
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01196.25 best | Ribosomal_L17 | 127.7 | 3.60e-37 | 95.0% | 99.0% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.95 | 91.0 | 8.09e-01 | 100.0% | 83.7% |
| 1gd8A00 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.94 | 90.0 | 8.94e-01 | 100.0% | 97.1% |
| 4v19R01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.94 | 90.0 | 8.65e-01 | 100.0% | 92.9% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.68 | 39.0 | 3.84e-01 | 84.2% | 52.8% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 32.0 | 3.18e-01 | 84.2% | 42.6% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.65 | 31.0 | 3.74e-01 | 84.2% | 65.7% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.64 | 33.0 | 3.77e-01 | 84.2% | 66.2% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.50e-01 | 75.2% | 94.2% |
| 2py6A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 34.0 | 2.85e-01 | 96.0% | 35.6% |
| 5f1cA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.53 | 34.0 | 2.53e-01 | 100.0% | 22.9% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 48.0 | 3.58e-01 | 100.0% | 83.5% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 36.0 | 3.88e-01 | 91.1% | 84.5% |
| 3v8oA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 30.0 | 3.13e-01 | 98.0% | 60.8% |
| 1puoB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 40.0 | 3.62e-01 | 85.1% | 96.5% |
| 2rg8A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 35.0 | 3.15e-01 | 82.2% | 48.7% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 31.0 | 3.17e-01 | 98.0% | 59.6% |
| 4azsA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 34.0 | 3.72e-01 | 95.0% | 86.4% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4139793 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.99 | 97.0 | 8.65e-01 | 100.0% | 77.7% |
| 4211031 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.99 | 96.0 | 8.26e-01 | 100.0% | 69.7% |
| 4386712 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.99 | 96.0 | 9.12e-01 | 100.0% | 87.8% |
| 4069847 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.98 | 96.0 | 8.32e-01 | 100.0% | 89.3% |
| 4597956 | 218.3.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 | 0.98 | 96.0 | 8.78e-01 | 100.0% | 95.1% |
| 4264650 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.98 | 95.0 | 8.29e-01 | 100.0% | 78.6% |
| 4473988 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.98 | 95.0 | 8.13e-01 | 100.0% | 82.8% |
| 3248387 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.97 | 94.0 | 8.63e-01 | 100.0% | 80.8% |
| 3204657 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.96 | 93.0 | 7.49e-01 | 100.0% | 59.4% |
| 4026944 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.96 | 92.0 | 8.73e-01 | 100.0% | 91.3% |
| 4832852 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.95 | 92.0 | 8.12e-01 | 100.0% | 74.8% |
| 4577455 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.95 | 92.0 | 8.17e-01 | 100.0% | 94.7% |
| 3601977 | 218.3.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 | 0.95 | 91.0 | 7.53e-01 | 100.0% | 63.7% |
| 2775555 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.95 | 91.0 | 7.64e-01 | 100.0% | 66.9% |
| 3719447 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.94 | 91.0 | 6.80e-01 | 100.0% | 47.4% |
| 3605039 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.94 | 90.0 | 7.91e-01 | 100.0% | 72.9% |
| 4024334 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.94 | 90.0 | 7.67e-01 | 100.0% | 68.0% |
| 3781258 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.91 | 87.0 | 7.88e-01 | 100.0% | 90.0% |
| 3617683 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.91 | 87.0 | 7.43e-01 | 100.0% | 70.0% |
| 4808074 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.91 | 86.0 | 8.00e-01 | 100.0% | 86.2% |
| 3474927 | 218.3.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Prokaryotic ribosomal protein L17 › Prokaryotic ribosomal protein L17 › Ribosomal_L17 | 0.90 | 86.0 | 7.34e-01 | 100.0% | 87.3% |
| 4017520 | 109.3.1.191 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27566 | 0.64 | 49.0 | 3.75e-01 | 82.2% | 59.0% |
| 3067223 | 3921.1.1.1 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr | 0.63 | 49.0 | 3.92e-01 | 85.1% | 81.7% |
| 4016271 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.61 | 42.0 | 4.48e-01 | 99.0% | 81.1% |
| 5071598 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 43.0 | 3.80e-01 | 75.2% | 81.4% |
| 4227860 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.58 | 35.0 | 4.11e-01 | 70.3% | 87.1% |
| 5065754 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.55 | 44.0 | 3.33e-01 | 87.1% | 63.6% |
| 3349391 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.54 | 37.0 | 3.00e-01 | 85.1% | 36.5% |
| 5012671 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 38.0 | 3.00e-01 | 79.2% | 78.7% |
| 4187841 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.51 | 35.0 | 2.88e-01 | 92.1% | 37.8% |
| 4966086 | 309.1.1.14 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB | 0.51 | 38.0 | 3.24e-01 | 79.2% | 55.4% |
| 3873184 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 31.0 | 3.39e-01 | 91.1% | 75.0% |
| 3716117 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.51 | 42.0 | 3.27e-01 | 96.0% | 75.7% |