←Back to structures
CAKLQF020000004.1__CAH1076717.1__SAMEA5780031_00946__00040
Bact-VirCAKLQF020000004.1__CAH1076717.1__SAMEA5780031_00946__00040
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 98-184
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01479.31 best | S4 | 67.0 | 1.30e-18 | 55.2% | 97.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vs5D02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.97 | 92.0 | 8.91e-01 | 97.7% | 90.4% |
| 5mmjd02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.91 | 87.0 | 8.36e-01 | 100.0% | 89.7% |
| 1vioA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.90 | 57.0 | 6.94e-01 | 100.0% | 96.6% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.90 | 57.0 | 6.49e-01 | 100.0% | 84.8% |
| 3dh3B01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.87 | 54.0 | 6.46e-01 | 100.0% | 91.7% |
| 3hp7A01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.80 | 55.0 | 6.32e-01 | 98.9% | 93.8% |
| 2janA03 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.77 | 55.0 | 5.27e-01 | 100.0% | 65.7% |
| 1p9kA00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.74 | 48.0 | 5.00e-01 | 100.0% | 72.2% |
| 1dm9A00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.67 | 60.0 | 5.61e-01 | 95.4% | 80.8% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.66 | 55.0 | 5.68e-01 | 97.7% | 93.8% |
| 2xzmW01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.64 | 52.0 | 4.72e-01 | 96.6% | 65.3% |
| 2k6pA00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.62 | 53.0 | 5.45e-01 | 96.6% | 97.6% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 50.0 | 4.49e-01 | 100.0% | 96.7% |
| 5m07A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 3.78e-01 | 71.3% | 75.8% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 38.0 | 4.02e-01 | 94.3% | 86.1% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 36.0 | 3.86e-01 | 95.4% | 84.5% |
| 4euuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 38.0 | 3.83e-01 | 74.7% | 77.5% |
| 4p6qA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 39.0 | 3.81e-01 | 97.7% | 71.6% |
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 34.0 | 3.51e-01 | 79.3% | 68.7% |
| 7kw8A01 | 1.10.10.970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain | 0.52 | 39.0 | 4.12e-01 | 86.2% | 97.3% |
| 3g0tA01 | 3.90.1150.100 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 38.0 | 3.20e-01 | 100.0% | 43.8% |
ECOD (87)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4347860 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.99 | 97.0 | 6.98e-01 | 100.0% | 42.9% |
| 2849944 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.96 | 90.0 | 6.52e-01 | 100.0% | 41.4% |
| 4091239 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.96 | 90.0 | 6.56e-01 | 100.0% | 41.5% |
| 5023885 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.94 | 61.0 | 7.03e-01 | 100.0% | 87.7% |
| 4118995 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.94 | 90.0 | 6.58e-01 | 100.0% | 44.3% |
| 4544433 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.94 | 90.0 | 6.45e-01 | 100.0% | 40.5% |
| 4586677 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.93 | 89.0 | 6.52e-01 | 100.0% | 45.0% |
| 4621232 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.93 | 77.0 | 5.75e-01 | 100.0% | 39.5% |
| 4240121 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.93 | 88.0 | 6.44e-01 | 100.0% | 43.0% |
| 4350669 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.92 | 84.0 | 6.26e-01 | 100.0% | 43.7% |
| 4556019 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.92 | 88.0 | 6.27e-01 | 100.0% | 42.3% |
| 4495690 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.91 | 88.0 | 6.70e-01 | 100.0% | 52.9% |
| 5030257 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.91 | 62.0 | 4.66e-01 | 71.3% | 33.0% |
| 4244261 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.91 | 86.0 | 6.40e-01 | 100.0% | 46.1% |
| 4882576 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.91 | 63.0 | 4.89e-01 | 71.3% | 38.6% |
| 6222 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 57.0 | 6.94e-01 | 100.0% | 96.6% |
| 6221 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 57.0 | 6.85e-01 | 100.0% | 94.9% |
| 4610806 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 84.0 | 6.50e-01 | 100.0% | 50.6% |
| 4942183 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 63.0 | 4.89e-01 | 79.3% | 38.2% |
| 4069286 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.89 | 58.0 | 6.43e-01 | 100.0% | 82.9% |
| 4598810 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.88 | 55.0 | 6.84e-01 | 98.9% | 100.0% |
| 3838526 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.88 | 58.0 | 6.49e-01 | 100.0% | 84.3% |
| 4354435 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 60.0 | 6.47e-01 | 100.0% | 82.4% |
| 4988890 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 59.0 | 5.69e-01 | 100.0% | 63.2% |
| 3697710 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 84.0 | 5.92e-01 | 100.0% | 44.4% |
| 4295933 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 82.0 | 6.33e-01 | 100.0% | 52.0% |
| 4968807 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 69.0 | 5.22e-01 | 82.8% | 41.6% |
| 3308037 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 81.0 | 5.90e-01 | 100.0% | 49.8% |
| 3968798 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 54.0 | 6.64e-01 | 98.9% | 100.0% |
| 4225898 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 58.0 | 5.89e-01 | 100.0% | 70.6% |
| 4258424 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.85 | 58.0 | 6.26e-01 | 100.0% | 82.4% |
| 5069060 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.85 | 57.0 | 5.79e-01 | 100.0% | 70.6% |
| 3706951 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 58.0 | 6.48e-01 | 100.0% | 88.6% |
| 4145377 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.84 | 69.0 | 5.39e-01 | 86.2% | 44.7% |
| 4655808 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.84 | 57.0 | 5.85e-01 | 100.0% | 72.6% |
| 5019299 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 68.0 | 5.15e-01 | 92.0% | 40.6% |
| 3650229 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 56.0 | 5.36e-01 | 100.0% | 60.0% |
| 4649306 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 57.0 | 5.95e-01 | 100.0% | 76.2% |
| 4424496 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.83 | 56.0 | 6.07e-01 | 100.0% | 81.3% |
| 4068245 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 57.0 | 5.86e-01 | 100.0% | 73.8% |
| 4348982 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 56.0 | 6.02e-01 | 100.0% | 82.2% |
| 3587128 | 221.1.2.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 | 0.83 | 54.0 | 5.94e-01 | 100.0% | 82.9% |
| 6218 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.82 | 56.0 | 5.83e-01 | 100.0% | 75.3% |
| 4681372 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.82 | 57.0 | 6.01e-01 | 100.0% | 78.8% |
| 4479416 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.82 | 56.0 | 5.90e-01 | 100.0% | 77.5% |
| 4381886 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 57.0 | 5.54e-01 | 100.0% | 66.3% |
| 4650909 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.81 | 59.0 | 6.14e-01 | 100.0% | 81.2% |
| 4033206 | 221.1.2.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 | 0.81 | 56.0 | 6.11e-01 | 100.0% | 88.6% |
| 4209983 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 58.0 | 5.47e-01 | 100.0% | 65.0% |
| 4339810 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.80 | 57.0 | 6.01e-01 | 100.0% | 81.2% |
| 4132665 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 57.0 | 5.46e-01 | 100.0% | 65.0% |
| 4296239 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.79 | 58.0 | 6.06e-01 | 100.0% | 82.5% |
| 4173735 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.79 | 55.0 | 5.96e-01 | 98.9% | 84.0% |
| 4563326 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.79 | 56.0 | 5.57e-01 | 100.0% | 71.1% |
| 4637141 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.79 | 56.0 | 5.55e-01 | 100.0% | 71.1% |
| 4415510 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 57.0 | 5.86e-01 | 100.0% | 77.6% |
| 3712758 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 58.0 | 5.21e-01 | 100.0% | 58.3% |
| 4086120 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.77 | 56.0 | 5.74e-01 | 100.0% | 77.6% |
| 4385812 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.77 | 56.0 | 5.27e-01 | 100.0% | 63.5% |
| 4404012 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 56.0 | 5.23e-01 | 100.0% | 63.5% |
| 4178101 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 54.0 | 5.51e-01 | 100.0% | 76.5% |
| 3739932 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.74 | 52.0 | 4.79e-01 | 100.0% | 57.3% |
| 4029060 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.74 | 69.0 | 5.22e-01 | 100.0% | 51.1% |
| 3389276 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.73 | 54.0 | 5.31e-01 | 100.0% | 72.3% |
| 5005310 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.73 | 59.0 | 5.38e-01 | 96.6% | 67.3% |
| 3304251 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.72 | 60.0 | 6.00e-01 | 92.0% | 85.4% |
| 3591034 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.71 | 61.0 | 5.96e-01 | 93.1% | 82.1% |
| 3989463 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.71 | 59.0 | 6.05e-01 | 90.8% | 89.4% |
| 5030490 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.71 | 56.0 | 5.16e-01 | 96.6% | 66.4% |
| 3505558 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.71 | 53.0 | 5.41e-01 | 100.0% | 81.2% |
| 4179500 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.69 | 56.0 | 5.14e-01 | 96.6% | 67.3% |
| 3595814 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.69 | 54.0 | 4.98e-01 | 90.8% | 65.5% |
| 5049914 | 221.1.2.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT | 0.69 | 55.0 | 5.04e-01 | 96.6% | 66.4% |
| 5066776 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.69 | 55.0 | 4.95e-01 | 92.0% | 63.5% |
| 5073366 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.69 | 58.0 | 5.65e-01 | 96.6% | 82.1% |
| 4973263 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.69 | 53.0 | 5.26e-01 | 96.6% | 78.9% |
| 4928594 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.68 | 57.0 | 4.50e-01 | 96.6% | 46.7% |
| 3933872 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.68 | 60.0 | 5.73e-01 | 94.3% | 88.0% |
| 4627769 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.68 | 53.0 | 5.31e-01 | 96.6% | 81.1% |
| 4994546 | 221.1.2.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT | 0.67 | 56.0 | 5.03e-01 | 97.7% | 65.0% |
| 4512477 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.67 | 53.0 | 4.90e-01 | 94.3% | 66.4% |
| 4108991 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.67 | 53.0 | 4.94e-01 | 96.6% | 69.5% |
| 4889700 | 221.1.2.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4,RS4NT | 0.66 | 54.0 | 4.83e-01 | 96.6% | 64.1% |
| 4681894 | 221.1.2.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT | 0.66 | 53.0 | 4.86e-01 | 94.3% | 67.3% |
| 1289911 | 221.1.2.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e,RS4NT | 0.66 | 53.0 | 4.80e-01 | 96.6% | 64.7% |
| 3894561 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.65 | 59.0 | 5.57e-01 | 95.4% | 91.0% |
| 3491140 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.65 | 57.0 | 5.32e-01 | 93.1% | 80.0% |
D2
medium
residues 8-96_195-207
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00163.25 best | Ribosomal_S4 | 96.8 | 1.40e-27 | 88.2% | 93.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fjgD01 | 1.10.1050.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › Ribosomal protein S4/S9, N-terminal domain | 0.93 | 89.0 | 8.63e-01 | 100.0% | 93.7% |
| 7oocC01 | 1.10.1050.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › Ribosomal protein S4/S9, N-terminal domain | 0.88 | 80.0 | 8.20e-01 | 98.0% | 100.0% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.52 | 39.0 | 4.04e-01 | 100.0% | 86.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973069 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.95 | 93.0 | 7.04e-01 | 100.0% | 96.6% |
| 4347860 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.95 | 91.0 | 6.93e-01 | 99.0% | 96.6% |
| 4544433 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.93 | 90.0 | 6.75e-01 | 100.0% | 96.7% |
| 4144571 | 221.1.2.11 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4 | 0.92 | 75.0 | 7.26e-01 | 87.3% | 77.3% |
| 4118995 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.89 | 85.0 | 6.54e-01 | 100.0% | 97.5% |
| 4621232 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.88 | 85.0 | 6.65e-01 | 100.0% | 95.3% |
| 4091239 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.87 | 84.0 | 6.41e-01 | 100.0% | 95.1% |
| 4240121 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.87 | 83.0 | 6.39e-01 | 99.0% | 96.5% |
| 2849944 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.87 | 82.0 | 6.35e-01 | 100.0% | 96.1% |
| 4556019 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.86 | 83.0 | 6.22e-01 | 100.0% | 95.9% |
| 4495690 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.84 | 59.0 | 4.75e-01 | 71.6% | 99.4% |
| 4350669 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.83 | 78.0 | 6.19e-01 | 99.0% | 98.9% |
| 4145377 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.79 | 64.0 | 5.22e-01 | 87.3% | 50.0% |
| 4029060 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 59.0 | 4.65e-01 | 87.3% | 41.6% |
| 4586677 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.76 | 72.0 | 5.58e-01 | 100.0% | 96.0% |
| 4244261 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.76 | 72.0 | 5.63e-01 | 100.0% | 98.4% |
| 4207224 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.51 | 28.0 | 3.08e-01 | 90.2% | 64.7% |