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CAKLQF020000004.1__CAH1076719.1__SAMEA5780031_00948__00042
Bact-VirCAKLQF020000004.1__CAH1076719.1__SAMEA5780031_00948__00042
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-62
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00416.28 best | Ribosomal_S13 | 54.7 | 2.00e-14 | 98.4% | 46.9% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vqeM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.96 | 91.0 | 8.59e-01 | 100.0% | 87.3% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.95 | 89.0 | 8.64e-01 | 100.0% | 92.4% |
| 8d8lM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.91 | 84.0 | 7.55e-01 | 100.0% | 76.5% |
| 3jamS01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.91 | 84.0 | 7.55e-01 | 100.0% | 75.3% |
| 4mb7A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 78.0 | 5.75e-01 | 96.7% | 53.7% |
| 3vk8A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 78.0 | 5.67e-01 | 96.7% | 42.8% |
| 1mu5A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.86 | 77.0 | 7.04e-01 | 96.7% | 91.0% |
| 1tdzA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.86 | 77.0 | 5.82e-01 | 96.7% | 53.7% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.86 | 78.0 | 5.85e-01 | 98.4% | 47.1% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.86 | 76.0 | 7.22e-01 | 96.7% | 95.8% |
| 1k82A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.84 | 78.0 | 6.04e-01 | 100.0% | 52.0% |
| 3ftdA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.83 | 67.0 | 6.63e-01 | 100.0% | 82.5% |
| 4jxjA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.83 | 71.0 | 6.94e-01 | 96.7% | 86.2% |
| 4gc5A02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.82 | 74.0 | 6.46e-01 | 100.0% | 72.2% |
| 6bekD00 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.81 | 71.0 | 6.24e-01 | 96.7% | 74.2% |
| 1k3xA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.81 | 72.0 | 5.58e-01 | 98.4% | 52.0% |
| 3futA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.79 | 70.0 | 6.91e-01 | 98.4% | 93.8% |
| 3v76A03 | 1.10.8.260 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like | 0.79 | 69.0 | 6.99e-01 | 96.7% | 100.0% |
| 3tqsA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.78 | 65.0 | 6.36e-01 | 98.4% | 84.6% |
| 1qyrA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.77 | 66.0 | 6.38e-01 | 100.0% | 83.8% |
| 7k2tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 65.0 | 4.38e-01 | 100.0% | 28.3% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 64.0 | 5.52e-01 | 98.4% | 90.8% |
| 4yerA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 62.0 | 4.25e-01 | 95.1% | 32.0% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.74 | 64.0 | 5.77e-01 | 98.4% | 86.0% |
| 2r6fA04 | 1.10.8.280 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like | 0.71 | 61.0 | 5.00e-01 | 98.4% | 70.3% |
| 4finB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 53.0 | 3.53e-01 | 96.7% | 46.0% |
| 4ag6A02 | 1.10.8.730 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 49.0 | 4.17e-01 | 88.5% | 61.8% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.63 | 54.0 | 4.37e-01 | 95.1% | 99.1% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 48.0 | 4.63e-01 | 86.9% | 87.1% |
| 5k97A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 43.0 | 4.17e-01 | 82.0% | 66.2% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 46.0 | 4.17e-01 | 82.0% | 63.1% |
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 46.0 | 4.07e-01 | 82.0% | 58.4% |
| 1d5tA03 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.60 | 47.0 | 4.06e-01 | 90.2% | 68.6% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.59 | 46.0 | 3.56e-01 | 86.9% | 100.0% |
| 2owaA01 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.59 | 44.0 | 3.58e-01 | 82.0% | 76.7% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.58 | 50.0 | 4.27e-01 | 98.4% | 71.6% |
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 48.0 | 3.99e-01 | 100.0% | 60.6% |
| 2h6bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.94e-01 | 98.4% | 83.3% |
| 2cgqA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 38.0 | 3.63e-01 | 80.3% | 90.5% |
| 7f0uA01 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.51 | 39.0 | 3.54e-01 | 91.8% | 81.1% |
| 3k7dA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 42.0 | 3.34e-01 | 96.7% | 91.0% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 36.0 | 2.41e-01 | 75.4% | 53.5% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069030 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.99 | 95.0 | 6.80e-01 | 100.0% | 41.2% |
| 4341142 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 94.0 | 7.38e-01 | 100.0% | 54.9% |
| 3678178 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 93.0 | 6.70e-01 | 100.0% | 41.4% |
| 4133813 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 94.0 | 7.32e-01 | 100.0% | 53.9% |
| 4973104 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 94.0 | 7.21e-01 | 100.0% | 50.8% |
| 4947191 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 94.0 | 6.72e-01 | 100.0% | 40.7% |
| 4374930 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.98 | 76.0 | 8.39e-01 | 80.3% | 98.0% |
| 5060576 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.97 | 93.0 | 8.29e-01 | 100.0% | 78.8% |
| 4995397 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.97 | 92.0 | 8.24e-01 | 100.0% | 76.2% |
| 4011361 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.97 | 92.0 | 6.61e-01 | 100.0% | 40.7% |
| 4981649 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.97 | 92.0 | 7.82e-01 | 100.0% | 67.8% |
| 4269641 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 92.0 | 7.16e-01 | 100.0% | 53.0% |
| 5054218 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 91.0 | 6.56e-01 | 100.0% | 40.7% |
| 4080306 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 91.0 | 6.56e-01 | 100.0% | 40.7% |
| 5035406 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 91.0 | 6.62e-01 | 100.0% | 42.8% |
| 4997687 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 91.0 | 7.12e-01 | 100.0% | 53.0% |
| 2123548 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 91.0 | 7.14e-01 | 100.0% | 54.0% |
| 2979137 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 90.0 | 7.11e-01 | 100.0% | 54.0% |
| 3663806 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 90.0 | 6.38e-01 | 100.0% | 47.5% |
| 2905436 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 90.0 | 7.80e-01 | 100.0% | 70.9% |
| 3783643 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 89.0 | 6.90e-01 | 100.0% | 51.7% |
| 1552285 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 89.0 | 6.79e-01 | 100.0% | 49.6% |
| 4165472 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.93 | 87.0 | 6.87e-01 | 100.0% | 53.9% |
| 4937429 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.93 | 84.0 | 7.95e-01 | 98.4% | 82.9% |
| 4882593 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.92 | 86.0 | 6.36e-01 | 100.0% | 45.0% |
| 4858910 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.92 | 85.0 | 6.66e-01 | 100.0% | 52.1% |
| 4523909 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.92 | 85.0 | 6.83e-01 | 100.0% | 56.4% |
| 2986054 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.91 | 84.0 | 7.49e-01 | 100.0% | 74.7% |
| 3430133 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.90 | 82.0 | 6.52e-01 | 100.0% | 53.0% |
| 5010628 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.88 | 80.0 | 7.03e-01 | 96.7% | 83.5% |
| 4979326 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.88 | 79.0 | 6.08e-01 | 96.7% | 53.6% |
| 5062453 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.87 | 81.0 | 6.19e-01 | 98.4% | 55.2% |
| 5031246 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.87 | 79.0 | 6.00e-01 | 96.7% | 53.1% |
| 4982925 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.86 | 77.0 | 6.79e-01 | 96.7% | 76.5% |
| 4934443 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.86 | 78.0 | 5.77e-01 | 100.0% | 42.1% |
| 4935087 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.86 | 79.0 | 6.01e-01 | 98.4% | 46.9% |
| 5077228 | 102.2.1.15 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Topo-VIb_trans | 0.86 | 77.0 | 5.95e-01 | 96.7% | 53.6% |
| 4313858 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.86 | 79.0 | 7.57e-01 | 100.0% | 90.0% |
| 4968258 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.86 | 81.0 | 6.17e-01 | 100.0% | 48.8% |
| 4114962 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.86 | 78.0 | 6.91e-01 | 98.4% | 85.9% |
| 4938159 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.86 | 77.0 | 7.16e-01 | 96.7% | 92.0% |
| 5003054 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.86 | 77.0 | 5.79e-01 | 96.7% | 51.1% |
| 5039312 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.86 | 80.0 | 7.20e-01 | 100.0% | 76.2% |
| 5079455 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 76.0 | 6.88e-01 | 96.7% | 78.8% |
| 4281411 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 76.0 | 6.75e-01 | 96.7% | 81.2% |
| 5051445 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.85 | 80.0 | 6.03e-01 | 100.0% | 46.9% |
| 4929481 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 79.0 | 7.15e-01 | 100.0% | 80.0% |
| 5074820 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 79.0 | 6.46e-01 | 100.0% | 60.0% |
| 5043778 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 77.0 | 7.00e-01 | 98.4% | 88.7% |
| 4271819 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 76.0 | 7.27e-01 | 96.7% | 90.0% |
| 5034089 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.85 | 79.0 | 6.08e-01 | 100.0% | 50.4% |
| 4975049 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 77.0 | 6.96e-01 | 98.4% | 90.0% |
| 4975930 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 79.0 | 5.95e-01 | 100.0% | 45.2% |
| 3699849 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 79.0 | 6.93e-01 | 100.0% | 72.9% |
| 5054537 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.85 | 76.0 | 7.01e-01 | 96.7% | 93.3% |
| 4494056 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.84 | 73.0 | 5.87e-01 | 95.1% | 54.8% |
| 4994521 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.84 | 79.0 | 6.12e-01 | 100.0% | 52.5% |
| 4931056 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.84 | 78.0 | 7.23e-01 | 100.0% | 81.3% |
| 5081513 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.84 | 78.0 | 6.09e-01 | 100.0% | 50.8% |
| 4984919 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.84 | 78.0 | 5.75e-01 | 100.0% | 42.1% |
| 4532012 | 102.2.1.4 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH | 0.84 | 77.0 | 6.82e-01 | 100.0% | 76.5% |
| 3282105 | 102.2.1.5 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH_5 | 0.84 | 73.0 | 6.26e-01 | 95.1% | 74.5% |
| 3944743 | 102.2.1.4 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH | 0.84 | 75.0 | 6.30e-01 | 98.4% | 66.0% |
| 5044781 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.83 | 73.0 | 6.82e-01 | 96.7% | 93.3% |
| 4980837 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.83 | 77.0 | 6.04e-01 | 100.0% | 51.7% |
| 3402309 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.83 | 77.0 | 6.78e-01 | 100.0% | 75.3% |
| 5079981 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.83 | 77.0 | 6.08e-01 | 100.0% | 56.5% |
| 4964967 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.82 | 75.0 | 5.65e-01 | 100.0% | 44.3% |
| 4999970 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.82 | 76.0 | 5.73e-01 | 100.0% | 46.7% |
| 3451103 | 102.2.1.6 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st | 0.82 | 72.0 | 6.73e-01 | 96.7% | 86.7% |
| 5045440 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.82 | 74.0 | 5.68e-01 | 98.4% | 47.7% |
| 3283977 | 102.2.1.5 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH_5 | 0.82 | 73.0 | 6.10e-01 | 96.7% | 66.0% |
| 5069452 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.82 | 75.0 | 5.77e-01 | 100.0% | 46.9% |
| 4077811 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.82 | 75.0 | 6.99e-01 | 100.0% | 82.7% |
| 3384847 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.82 | 70.0 | 6.15e-01 | 100.0% | 64.8% |
| 5062293 | 102.2.1.15 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Topo-VIb_trans | 0.81 | 74.0 | 5.95e-01 | 100.0% | 54.8% |
| 3311219 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.81 | 73.0 | 7.01e-01 | 98.4% | 87.1% |
| 5054212 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.81 | 72.0 | 6.48e-01 | 100.0% | 80.0% |
| 4960632 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.81 | 74.0 | 6.71e-01 | 100.0% | 78.8% |
| 5019728 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.81 | 74.0 | 6.56e-01 | 100.0% | 74.1% |
| 4066686 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.81 | 72.0 | 6.88e-01 | 100.0% | 85.7% |
| 4298450 | 102.2.1.1 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD | 0.81 | 74.0 | 7.03e-01 | 100.0% | 87.1% |
| 5050147 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.81 | 73.0 | 6.94e-01 | 98.4% | 92.9% |
| 3269953 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.81 | 71.0 | 6.48e-01 | 98.4% | 80.0% |
| 4953943 | 102.2.1.6 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st | 0.81 | 73.0 | 6.93e-01 | 98.4% | 90.0% |
| 5066824 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.80 | 73.0 | 6.60e-01 | 100.0% | 78.8% |
| 5024499 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.80 | 73.0 | 5.82e-01 | 100.0% | 53.9% |
| 5027504 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.79 | 71.0 | 6.18e-01 | 100.0% | 66.7% |
| 5056273 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.79 | 70.0 | 5.58e-01 | 96.7% | 55.7% |
| 4366692 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.79 | 70.0 | 6.40e-01 | 100.0% | 77.5% |
| 5072380 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.79 | 71.0 | 5.99e-01 | 100.0% | 63.0% |
| 5016076 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.78 | 69.0 | 5.97e-01 | 100.0% | 66.3% |
| 4932544 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.77 | 67.0 | 4.96e-01 | 100.0% | 38.1% |
| 4347496 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.76 | 66.0 | 6.22e-01 | 98.4% | 82.7% |
| 5059459 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.75 | 66.0 | 6.04e-01 | 100.0% | 80.0% |
| 3175983 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 56.0 | 3.63e-01 | 96.7% | 32.4% |
| 4886263 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 50.0 | 5.18e-01 | 86.9% | 96.4% |
| 4391818 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.63 | 50.0 | 4.52e-01 | 100.0% | 63.5% |
| 3812781 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.58 | 48.0 | 3.27e-01 | 98.4% | 25.4% |
| 3451517 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 48.0 | 3.30e-01 | 100.0% | 26.3% |
D2
medium
residues 67-110
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00416.28 best | Ribosomal_S13 | 62.4 | 8.00e-17 | 95.5% | 32.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mmjm02 | 4.10.910.10 | Few Secondary Structures › Irregular › 30s ribosomal protein s13; domain 2 › Ribosomal protein S13/S18, C-terminal domain | 0.92 | 75.0 | 7.78e-01 | 88.6% | 95.1% |
| 3qbmB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 47.0 | 3.12e-01 | 86.4% | 62.9% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.03e-01 | 86.4% | 75.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4133813 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.96 | 90.0 | 6.35e-01 | 100.0% | 38.3% |
| 4165472 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 88.0 | 6.26e-01 | 100.0% | 38.3% |
| 3783643 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 88.0 | 6.21e-01 | 100.0% | 36.7% |
| 4341142 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 88.0 | 6.27e-01 | 100.0% | 38.9% |
| 3205438 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.95 | 88.0 | 7.00e-01 | 100.0% | 55.0% |
| 1552285 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.93 | 85.0 | 5.94e-01 | 100.0% | 35.2% |
| 5035406 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.92 | 80.0 | 5.38e-01 | 93.2% | 28.3% |
| 2979137 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.92 | 83.0 | 5.96e-01 | 100.0% | 38.1% |
| 4882593 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.92 | 79.0 | 5.38e-01 | 93.2% | 29.3% |
| 4494056 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.91 | 82.0 | 5.90e-01 | 100.0% | 39.1% |
| 4947191 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.90 | 77.0 | 5.18e-01 | 93.2% | 27.3% |
| 5054218 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.89 | 78.0 | 5.25e-01 | 95.5% | 28.0% |
| 3663806 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.89 | 82.0 | 5.38e-01 | 100.0% | 27.5% |
| 4011361 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.89 | 76.0 | 5.08e-01 | 93.2% | 27.3% |
| 5069030 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.88 | 76.0 | 5.10e-01 | 93.2% | 27.7% |
| 5030486 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.88 | 77.0 | 5.16e-01 | 95.5% | 27.5% |
| 4269641 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.88 | 77.0 | 5.63e-01 | 100.0% | 38.3% |
| 3678178 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.86 | 78.0 | 5.31e-01 | 100.0% | 47.6% |
| 4932544 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.80 | 66.0 | 4.50e-01 | 95.5% | 26.2% |