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CAKLQF020000004.1__CAH1076738.1__SAMEA5780031_00967__00061
Bact-VirCAKLQF020000004.1__CAH1076738.1__SAMEA5780031_00967__00061
Identity
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-120
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00181.31 best | Ribosomal_L2_N | 134.9 | 1.10e-39 | 91.8% | 97.8% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw3B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.98 | 92.0 | 9.44e-01 | 95.9% | 100.0% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.95 | 54.0 | 7.26e-01 | 90.7% | 100.0% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.94 | 83.0 | 8.01e-01 | 91.8% | 88.7% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 53.0 | 5.92e-01 | 75.3% | 91.0% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.63 | 33.0 | 4.01e-01 | 81.4% | 80.7% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 38.0 | 4.47e-01 | 93.8% | 95.5% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 38.0 | 4.27e-01 | 94.8% | 86.3% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 37.0 | 4.34e-01 | 93.8% | 94.0% |
| 1eotA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 36.0 | 3.97e-01 | 87.6% | 83.8% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 37.0 | 4.36e-01 | 91.8% | 98.5% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 44.0 | 3.65e-01 | 85.6% | 78.3% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 34.0 | 4.03e-01 | 91.8% | 93.9% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028381 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.99 | 77.0 | 7.46e-01 | 100.0% | 73.3% |
| 4598956 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.98 | 96.0 | 9.28e-01 | 100.0% | 93.3% |
| 4504508 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.98 | 76.0 | 8.19e-01 | 100.0% | 90.6% |
| 4160115 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.98 | 95.0 | 8.48e-01 | 100.0% | 76.8% |
| 4602962 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.98 | 95.0 | 7.93e-01 | 100.0% | 78.0% |
| 3190369 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.97 | 75.0 | 7.23e-01 | 96.9% | 72.4% |
| 3633382 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.97 | 94.0 | 7.76e-01 | 100.0% | 65.2% |
| 4341478 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.97 | 76.0 | 8.17e-01 | 100.0% | 91.8% |
| 4650667 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.97 | 92.0 | 9.12e-01 | 97.9% | 100.0% |
| 3254316 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.97 | 86.0 | 8.98e-01 | 91.8% | 100.0% |
| 2979119 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.95 | 91.0 | 7.77e-01 | 100.0% | 70.8% |
| 4027701 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.94 | 85.0 | 8.47e-01 | 93.8% | 100.0% |
| 4315771 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.93 | 57.0 | 6.96e-01 | 88.7% | 92.3% |
| 4208450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.93 | 56.0 | 7.23e-01 | 88.7% | 100.0% |
| 5035086 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.91 | 56.0 | 7.11e-01 | 84.5% | 100.0% |
| 5054268 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.91 | 57.0 | 6.98e-01 | 88.7% | 95.4% |
| 3246931 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.90 | 79.0 | 7.05e-01 | 91.8% | 73.8% |
| 3798208 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.90 | 79.0 | 7.39e-01 | 91.8% | 83.5% |
| 4213134 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.90 | 85.0 | 7.60e-01 | 100.0% | 77.7% |
| 2641776 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.90 | 85.0 | 7.59e-01 | 100.0% | 76.6% |
| 4932378 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.89 | 52.0 | 6.69e-01 | 87.6% | 96.7% |
| 3392485 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.88 | 65.0 | 6.81e-01 | 92.8% | 82.2% |
| 5028066 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.87 | 56.0 | 6.80e-01 | 86.6% | 96.9% |
| 4149372 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 55.0 | 6.71e-01 | 86.6% | 96.9% |
| 4461475 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 56.0 | 6.63e-01 | 87.6% | 92.9% |
| 4928706 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.85 | 56.0 | 6.57e-01 | 86.6% | 92.9% |
| 4071167 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 56.0 | 6.65e-01 | 86.6% | 94.3% |
| 4114145 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 76.0 | 6.88e-01 | 100.0% | 73.8% |
| 4343990 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 67.0 | 7.18e-01 | 95.9% | 95.3% |
| 4940372 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.83 | 57.0 | 6.70e-01 | 86.6% | 97.1% |
| 4945674 | 2.1.1.252 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C | 0.82 | 56.0 | 6.62e-01 | 86.6% | 97.1% |
| 4931657 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.81 | 59.0 | 6.45e-01 | 81.4% | 91.3% |
| 3709493 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 75.0 | 6.68e-01 | 99.0% | 76.9% |
| 4809491 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 56.0 | 6.19e-01 | 72.2% | 96.2% |
| 5044263 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 54.0 | 6.32e-01 | 86.6% | 95.7% |
| 4053455 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.80 | 54.0 | 6.36e-01 | 86.6% | 97.1% |
| 3478003 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 68.0 | 6.49e-01 | 92.8% | 85.5% |
| 2642946 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.76 | 59.0 | 6.15e-01 | 81.4% | 86.8% |
| 3479868 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 59.0 | 6.13e-01 | 81.4% | 93.3% |
| 3222817 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.55 | 40.0 | 3.68e-01 | 99.0% | 60.0% |
| 4984320 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 44.0 | 3.93e-01 | 85.6% | 89.2% |
| 4079201 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 44.0 | 4.18e-01 | 85.6% | 91.8% |
| 3973121 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.53 | 44.0 | 3.97e-01 | 87.6% | 91.4% |
| 3985171 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 44.0 | 3.82e-01 | 90.7% | 90.0% |
| 4417109 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 43.0 | 4.21e-01 | 89.7% | 91.4% |
| 5032554 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 43.0 | 3.94e-01 | 90.7% | 87.2% |
| 3967545 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.50 | 42.0 | 3.53e-01 | 89.7% | 76.9% |
| 4237578 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 43.0 | 3.97e-01 | 90.7% | 90.0% |
D2
medium
residues 121-203_243-274
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03947.25 best | Ribosomal_L2_C | 104.1 | 7.90e-30 | 94.8% | 64.3% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 28.0 | 3.47e-01 | 76.5% | 65.2% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 41.0 | 3.00e-01 | 71.3% | 38.2% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 34.0 | 4.06e-01 | 94.8% | 98.7% |
| 1whzA00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.52 | 27.0 | 3.37e-01 | 75.7% | 82.6% |
| 2ymsB00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 33.0 | 3.97e-01 | 92.2% | 100.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254315 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.98 | 93.0 | 8.07e-01 | 97.4% | 95.6% |
| 4667986 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.97 | 89.0 | 7.96e-01 | 93.9% | 100.0% |
| 3323984 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.96 | 81.0 | 6.65e-01 | 86.1% | 78.9% |
| 4634428 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.96 | 92.0 | 8.06e-01 | 98.3% | 100.0% |
| 4023922 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.96 | 81.0 | 7.46e-01 | 87.0% | 100.0% |
| 3688859 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.94 | 92.0 | 7.19e-01 | 100.0% | 99.5% |
| 4945675 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.91 | 74.0 | 6.58e-01 | 82.6% | 96.7% |
| 4078549 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.91 | 73.0 | 6.57e-01 | 82.6% | 96.0% |
| 4213135 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.91 | 66.0 | 6.40e-01 | 73.9% | 100.0% |
| 4282594 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.91 | 85.0 | 7.98e-01 | 96.5% | 97.0% |
| 3595917 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.90 | 84.0 | 7.47e-01 | 97.4% | 99.4% |
| 3608770 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.89 | 84.0 | 7.46e-01 | 98.3% | 99.4% |
| 4275696 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.87 | 67.0 | 6.42e-01 | 80.0% | 100.0% |
| 2641775 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.84 | 66.0 | 6.25e-01 | 81.7% | 99.3% |
| 3495652 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 74.0 | 6.43e-01 | 97.4% | 99.4% |
| 3503388 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.78 | 71.0 | 7.27e-01 | 93.9% | 100.0% |
| 3798188 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 70.0 | 6.39e-01 | 93.9% | 94.5% |
| 2127495 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.76 | 71.0 | 6.16e-01 | 96.5% | 100.0% |
| 1442407 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.75 | 71.0 | 5.94e-01 | 100.0% | 86.5% |
| 3993968 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.75 | 68.0 | 6.16e-01 | 93.9% | 93.8% |
| 3758025 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.74 | 71.0 | 6.96e-01 | 98.3% | 99.2% |
| 4981525 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 28.0 | 3.34e-01 | 90.4% | 60.8% |
| 3490377 | 331.19.1.3 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C | 0.61 | 31.0 | 3.63e-01 | 78.3% | 68.8% |
| 5074928 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 26.0 | 3.40e-01 | 90.4% | 70.8% |
| 4947558 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 26.0 | 2.96e-01 | 90.4% | 50.0% |
| 4944335 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 28.0 | 3.08e-01 | 90.4% | 53.8% |
| 4929392 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 26.0 | 2.98e-01 | 90.4% | 52.2% |
| 4985176 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 27.0 | 2.76e-01 | 90.4% | 42.7% |
| 4346967 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.56 | 29.0 | 3.26e-01 | 76.5% | 63.3% |
| 3638174 | 4.1.1.320 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 | 0.55 | 41.0 | 4.52e-01 | 97.4% | 94.7% |
| 5062306 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 26.0 | 2.89e-01 | 78.3% | 53.3% |
| 3739666 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.54 | 28.0 | 3.17e-01 | 76.5% | 63.3% |
| 4018596 | 4.1.1.320 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 | 0.52 | 41.0 | 4.40e-01 | 92.2% | 97.0% |