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CAKLQF020000004.1__CAH1076805.1__SAMEA5780031_01034__00128

Bact-Vir

CAKLQF020000004.1__CAH1076805.1__SAMEA5780031_01034__00128

Identity

Kingdom:
phage

Quality

81.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 195-304
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01594.23 best AI-2E_transport 62.9 4.80e-17 100.0% 32.5%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 44.0 4.64e-01 89.1% 67.3%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.69 44.0 4.30e-01 92.7% 58.7%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 49.0 4.98e-01 75.5% 100.0%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.67 36.0 3.67e-01 80.9% 51.4%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 42.0 4.32e-01 90.9% 65.7%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.66 47.0 4.16e-01 73.6% 58.7%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.65 46.0 4.54e-01 73.6% 75.4%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 45.0 3.77e-01 72.7% 94.0%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.64 45.0 4.02e-01 72.7% 95.7%
1h6gA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 39.0 3.85e-01 91.8% 57.1%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.62 47.0 4.47e-01 79.1% 78.3%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.61 38.0 3.23e-01 96.4% 39.1%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.61 44.0 3.63e-01 75.5% 74.9%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.61 42.0 3.70e-01 99.1% 47.8%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 4.48e-01 85.5% 71.6%
2qgaB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.60 45.0 4.45e-01 79.1% 98.2%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.60 44.0 4.02e-01 78.2% 76.4%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 41.0 4.07e-01 72.7% 81.2%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 42.0 4.34e-01 91.8% 77.6%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.58 50.0 4.04e-01 94.5% 61.3%
4iu9B01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.58 52.0 4.15e-01 100.0% 96.9%
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.58 43.0 4.11e-01 77.3% 100.0%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 32.0 3.55e-01 80.0% 66.7%
1t3dA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.57 41.0 3.80e-01 73.6% 85.0%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 44.0 4.42e-01 84.5% 90.4%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 40.0 4.38e-01 86.4% 92.1%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 43.0 3.97e-01 81.8% 80.0%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 45.0 3.57e-01 88.2% 53.6%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.55 38.0 3.41e-01 70.0% 88.7%
1u3dA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 38.0 3.57e-01 70.9% 61.9%
1dbhA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.54 46.0 3.76e-01 92.7% 68.7%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 42.0 3.35e-01 82.7% 51.8%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 40.0 3.75e-01 79.1% 78.0%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 38.0 3.59e-01 74.5% 59.6%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 46.0 4.06e-01 93.6% 72.3%
4nleA02 1.10.275.60 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.53 38.0 3.64e-01 78.2% 63.6%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.93e-01 86.4% 75.4%
1pw4A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 44.0 3.62e-01 95.5% 87.7%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.52 45.0 3.86e-01 98.2% 77.2%
2c42A06 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 41.0 2.84e-01 86.4% 29.4%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 44.0 3.99e-01 100.0% 84.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602989 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.93 89.0 6.54e-01 100.0% 43.9%
5016189 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.91 86.0 6.26e-01 100.0% 43.3%
5018340 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.90 85.0 6.13e-01 100.0% 40.0%
4048768 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.90 85.0 6.09e-01 100.0% 39.6%
5035991 3567.1.1.112 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport 0.90 85.0 7.32e-01 100.0% 70.6%
4957839 5069.1.3.130 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › AI-2E_transport 0.89 84.0 6.13e-01 100.0% 42.6%
4953656 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.89 84.0 7.24e-01 100.0% 69.4%
4005919 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.88 83.0 5.99e-01 100.0% 50.4%
4496831 3755.4.1.49 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › AI-2E_transport 0.88 83.0 6.10e-01 100.0% 43.1%
4603896 1075.4.1.38 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › AI-2E_transport 0.87 82.0 5.82e-01 100.0% 50.0%
3942099 605.1.1.209 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › AI-2E_transport 0.86 74.0 7.79e-01 90.9% 100.0%
3588155 1075.4.1.38 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › AI-2E_transport 0.86 81.0 5.61e-01 100.0% 35.6%
5006067 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.86 80.0 5.91e-01 100.0% 43.8%
4008134 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.86 80.0 5.97e-01 100.0% 44.3%
3589352 192.2.1.50 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › AI-2E_transport 0.86 80.0 5.89e-01 100.0% 43.0%
4457750 3567.1.1.112 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport 0.85 76.0 7.62e-01 93.6% 100.0%
3283708 1075.4.1.38 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › AI-2E_transport 0.85 79.0 5.95e-01 100.0% 44.8%
5014863 3755.3.1.524 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › AI-2E_transport 0.85 79.0 5.56e-01 100.0% 48.7%
3988246 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.85 79.0 5.52e-01 100.0% 34.8%
5053975 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.83 77.0 5.56e-01 100.0% 38.9%
3986989 5054.1.1.68 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport 0.82 76.0 6.50e-01 100.0% 95.3%
3590978 102.1.2.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AI-2E_transport 0.82 75.0 5.50e-01 100.0% 51.1%
3294533 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.80 72.0 6.28e-01 96.4% 87.5%
3240315 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.76 47.0 4.98e-01 94.5% 69.0%
4964311 5039.1.1.2 alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › DUF420 0.72 42.0 3.52e-01 85.5% 35.0%
4296017 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.72 51.0 4.84e-01 73.6% 93.8%
5017720 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.70 45.0 3.50e-01 73.6% 30.4%
4026102 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.68 45.0 5.21e-01 73.6% 97.3%
3905988 4982.1.1.4 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › SYS1 0.68 48.0 4.55e-01 90.9% 61.5%
4465966 632.11.1.10 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › EzrA 0.68 48.0 4.60e-01 74.5% 94.6%
4952530 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.67 42.0 3.98e-01 90.0% 51.9%
5070606 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.65 49.0 4.59e-01 79.1% 97.8%
4011174 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.65 55.0 5.68e-01 97.3% 100.0%
3972434 604.5.1.33 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › FUSC 0.65 50.0 4.47e-01 81.8% 94.8%
5014639 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.63 41.0 4.25e-01 93.6% 71.0%
4085606 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.63 43.0 4.40e-01 94.5% 70.9%
5016669 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.62 45.0 3.82e-01 75.5% 74.6%
3609403 1189.1.1.1 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.62 51.0 3.50e-01 88.2% 91.3%
3423128 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.58 46.0 4.25e-01 89.1% 82.0%
3989633 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 39.0 3.02e-01 70.0% 47.5%
3711200 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 49.0 3.25e-01 95.5% 39.6%
3929481 109.49.1.1 alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.56 44.0 3.44e-01 84.5% 60.8%
3502455 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.56 51.0 4.08e-01 100.0% 62.4%
4138073 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.56 42.0 4.00e-01 79.1% 87.7%
3964217 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.56 45.0 3.48e-01 88.2% 76.1%
3367930 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 42.0 3.70e-01 79.1% 74.4%
4208599 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 41.0 3.94e-01 78.2% 88.5%
4097792 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 41.0 3.93e-01 77.3% 91.2%
3447070 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.55 48.0 4.62e-01 97.3% 96.2%
4982649 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 47.0 3.90e-01 91.8% 92.6%
4359404 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 41.0 3.93e-01 78.2% 88.5%
4393414 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 40.0 3.91e-01 77.3% 89.5%
4680489 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.55 41.0 3.96e-01 78.2% 88.8%
3593589 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.54 38.0 3.63e-01 70.9% 93.6%
3969002 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 47.0 3.96e-01 96.4% 92.6%
3735343 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.54 47.0 3.75e-01 98.2% 92.8%
3988314 1002.1.1.4 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › ThrE_2 0.54 38.0 3.59e-01 75.5% 70.8%
4598975 1002.1.1.0 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel 0.54 41.0 4.14e-01 80.9% 94.7%
5024553 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 47.0 4.00e-01 98.2% 97.2%
3822894 109.4.1.2392 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box 0.53 38.0 3.50e-01 74.5% 58.6%
3235605 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 42.0 3.26e-01 87.3% 74.8%
3593820 1002.1.1.0 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel 0.50 37.0 3.74e-01 79.1% 95.7%