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CAKLQF020000004.1__CAH1076863.1__SAMEA5780031_01064__00158
Bact-VirCAKLQF020000004.1__CAH1076863.1__SAMEA5780031_01064__00158
Identity
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-85
Domain cluster:
rep: BML_coassembly_scaffold_214_prodigal-single.1__X__X__00309__D6-63
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01192.28 best | RNA_pol_Rpb6 | 77.3 | 9.90e-22 | 66.2% | 98.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5uagE00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.87 | 67.0 | 6.47e-01 | 80.0% | 74.2% |
| 2ganA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 45.0 | 3.77e-01 | 75.0% | 75.7% |
| 3oqvA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.61 | 43.0 | 3.19e-01 | 75.0% | 73.0% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 38.0 | 4.15e-01 | 71.2% | 77.3% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 36.0 | 3.66e-01 | 81.2% | 63.4% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.56 | 40.0 | 3.82e-01 | 76.2% | 96.9% |
| 3d85C00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 36.0 | 3.07e-01 | 70.0% | 85.7% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 32.0 | 2.80e-01 | 77.5% | 38.7% |
| 1g71A02 | 1.10.8.160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 | 0.52 | 37.0 | 3.42e-01 | 76.2% | 85.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4343172 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.92 | 70.0 | 6.88e-01 | 78.8% | 76.5% |
| 4059386 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.91 | 63.0 | 7.02e-01 | 71.2% | 90.8% |
| 4311410 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.90 | 61.0 | 6.80e-01 | 71.2% | 86.2% |
| 4876269 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.89 | 62.0 | 7.02e-01 | 71.2% | 93.5% |
| 4209325 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.88 | 68.0 | 6.68e-01 | 80.0% | 77.6% |
| 1111574 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.88 | 67.0 | 6.84e-01 | 80.0% | 83.5% |
| 4431704 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.88 | 66.0 | 7.11e-01 | 78.8% | 92.9% |
| 4078503 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.87 | 63.0 | 7.04e-01 | 75.0% | 92.3% |
| 4433399 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.87 | 62.0 | 6.61e-01 | 73.8% | 98.6% |
| 4053116 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.87 | 66.0 | 6.60e-01 | 78.8% | 83.7% |
| 4188486 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 67.0 | 6.62e-01 | 81.2% | 83.5% |
| 2715292 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 59.0 | 6.68e-01 | 71.2% | 91.8% |
| 4338423 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 64.0 | 6.03e-01 | 77.5% | 78.9% |
| 4074990 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 64.0 | 5.89e-01 | 77.5% | 66.0% |
| 3587412 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 64.0 | 6.90e-01 | 77.5% | 91.4% |
| 4491625 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.86 | 59.0 | 6.33e-01 | 72.5% | 81.4% |
| 4127245 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.84 | 58.0 | 6.43e-01 | 71.2% | 90.8% |
| 4082216 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.83 | 55.0 | 6.68e-01 | 71.2% | 100.0% |
| 4354455 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.82 | 63.0 | 6.78e-01 | 80.0% | 92.9% |
| 4091157 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.82 | 60.0 | 5.92e-01 | 76.2% | 87.1% |
| 4078439 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.82 | 60.0 | 6.59e-01 | 76.2% | 93.8% |
| 4985531 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.82 | 57.0 | 6.52e-01 | 72.5% | 95.0% |
| 4406284 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.80 | 60.0 | 6.41e-01 | 77.5% | 92.9% |
| 4440174 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.78 | 68.0 | 6.65e-01 | 90.0% | 91.8% |
| 4143647 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.78 | 71.0 | 6.66e-01 | 100.0% | 88.4% |
| 3440420 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 44.0 | 3.86e-01 | 81.2% | 94.2% |
| 3281501 | 2005.3.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › Pyoverdine biosynthesis protein PvcA › Pyoverdine biosynthesis protein PvcA › DIT1_PvcA | 0.56 | 49.0 | 3.36e-01 | 100.0% | 45.6% |
| 3966767 | 2005.3.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › Pyoverdine biosynthesis protein PvcA › Pyoverdine biosynthesis protein PvcA › DIT1_PvcA | 0.55 | 46.0 | 3.14e-01 | 96.2% | 44.4% |
| 3799936 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.52 | 41.0 | 3.84e-01 | 91.3% | 98.2% |