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CAKLQF020000004.1__CAH1076869.1__SAMEA5780031_01067__00161
Bact-VirCAKLQF020000004.1__CAH1076869.1__SAMEA5780031_01067__00161
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
rep: S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00461__D2-50
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04324.21 best | Fer2_BFD | 58.2 | 1.10e-15 | 80.7% | 100.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6e6qA00 | 1.10.10.1100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain | 0.98 | 84.0 | 8.86e-01 | 88.7% | 98.2% |
| 1y56A04 | 1.10.10.1100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain | 0.86 | 70.0 | 6.45e-01 | 87.1% | 72.7% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 41.0 | 4.32e-01 | 72.6% | 67.3% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.67 | 51.0 | 4.04e-01 | 100.0% | 39.8% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.67 | 55.0 | 5.52e-01 | 93.5% | 92.2% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.66 | 57.0 | 4.90e-01 | 98.4% | 62.4% |
| 1u0jA01 | 1.10.10.950 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 51.0 | 5.30e-01 | 93.5% | 100.0% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.63 | 44.0 | 4.16e-01 | 72.6% | 94.5% |
| 6jtdA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.62 | 44.0 | 3.06e-01 | 74.2% | 43.0% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.62 | 49.0 | 4.68e-01 | 88.7% | 87.7% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 4.22e-01 | 100.0% | 61.7% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.61 | 49.0 | 4.23e-01 | 90.3% | 59.4% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 48.0 | 4.11e-01 | 88.7% | 82.3% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.57 | 42.0 | 3.01e-01 | 91.9% | 25.4% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 43.0 | 4.14e-01 | 96.8% | 91.1% |
| 7w0kA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 37.0 | 2.66e-01 | 75.8% | 28.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185707 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.99 | 87.0 | 9.09e-01 | 90.3% | 98.2% |
| 3687311 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.97 | 83.0 | 7.87e-01 | 88.7% | 80.0% |
| 3963828 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.96 | 73.0 | 8.14e-01 | 79.0% | 98.0% |
| 5040358 | 101.32.1.2 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › SO_alpha_A3 | 0.96 | 79.0 | 7.08e-01 | 85.5% | 70.0% |
| 3959691 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.96 | 76.0 | 8.04e-01 | 82.3% | 92.7% |
| 3953250 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.95 | 75.0 | 4.84e-01 | 82.3% | 21.7% |
| 1823203 | 101.32.1.2 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › SO_alpha_A3 | 0.95 | 77.0 | 8.08e-01 | 85.5% | 98.2% |
| 3291653 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.95 | 76.0 | 8.02e-01 | 85.5% | 94.5% |
| 4954971 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.94 | 78.0 | 7.20e-01 | 87.1% | 76.0% |
| 4251241 | 101.32.1.2 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › SO_alpha_A3 | 0.94 | 77.0 | 6.83e-01 | 87.1% | 67.1% |
| 4514347 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.93 | 70.0 | 7.75e-01 | 79.0% | 98.0% |
| 5006731 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.93 | 76.0 | 6.84e-01 | 87.1% | 66.3% |
| 4518685 | 101.32.1.2 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › SO_alpha_A3 | 0.93 | 77.0 | 6.94e-01 | 87.1% | 71.2% |
| 4681158 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.92 | 79.0 | 7.16e-01 | 90.3% | 70.0% |
| 4626177 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.92 | 86.0 | 7.78e-01 | 100.0% | 96.2% |
| 4670888 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.90 | 74.0 | 6.74e-01 | 87.1% | 71.2% |
| 3279224 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.90 | 74.0 | 7.89e-01 | 88.7% | 98.2% |
| 4355268 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.90 | 76.0 | 7.71e-01 | 90.3% | 95.0% |
| 5049369 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.83 | 67.0 | 6.16e-01 | 87.1% | 71.2% |
| 3962901 | 6058.1.1.0 ↗ | alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase | 0.75 | 59.0 | 5.15e-01 | 87.1% | 57.9% |
| 3279737 | 564.1.1.4 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N | 0.72 | 61.0 | 6.22e-01 | 100.0% | 95.0% |
| 3734056 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.70 | 48.0 | 2.87e-01 | 72.6% | 72.0% |
| 3712322 | 3050.1.1.0 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain | 0.66 | 45.0 | 3.38e-01 | 71.0% | 66.7% |
| 5038818 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 53.0 | 3.47e-01 | 95.2% | 30.0% |
| 3641983 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.63 | 54.0 | 3.42e-01 | 95.2% | 26.6% |
| 4130632 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 45.0 | 4.47e-01 | 82.3% | 76.9% |
| 3664940 | 192.4.1.22 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 | 0.60 | 53.0 | 4.89e-01 | 100.0% | 96.2% |
| 4169383 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.60 | 42.0 | 3.27e-01 | 80.6% | 32.4% |
| 3364518 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.59 | 50.0 | 3.22e-01 | 95.2% | 33.9% |
| 3362883 | 101.1.2.160 ↗ | alpha arrays › HTH › HTH › winged helix domain › BLACT_WH | 0.59 | 50.0 | 3.78e-01 | 95.2% | 67.7% |
| 3555061 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.55 | 48.0 | 3.49e-01 | 98.4% | 54.3% |