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CAKLQF020000004.1__CAH1076901.1__SAMEA5780031_01083__00177
Bact-VirCAKLQF020000004.1__CAH1076901.1__SAMEA5780031_01083__00177
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-164_178-189
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05137.19 best | PilN | 57.9 | 1.10e-15 | 100.0% | 82.0% |
CATH (76)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.83 | 75.0 | 6.27e-01 | 100.0% | 77.1% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.83 | 76.0 | 6.50e-01 | 100.0% | 74.7% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.78 | 44.0 | 3.67e-01 | 100.0% | 33.9% |
| 4qjvA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.77 | 62.0 | 5.53e-01 | 98.5% | 62.9% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.76 | 60.0 | 5.29e-01 | 84.6% | 61.7% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.76 | 63.0 | 6.05e-01 | 100.0% | 78.9% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.76 | 59.0 | 5.15e-01 | 83.1% | 56.2% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 58.0 | 4.76e-01 | 83.1% | 67.5% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.74 | 58.0 | 5.40e-01 | 84.6% | 70.0% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 45.0 | 3.44e-01 | 100.0% | 30.5% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 59.0 | 4.60e-01 | 87.7% | 77.7% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.73 | 66.0 | 4.69e-01 | 100.0% | 35.3% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.71 | 62.0 | 4.51e-01 | 100.0% | 34.6% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.71 | 62.0 | 5.24e-01 | 100.0% | 76.1% |
| 4aybL00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.71 | 57.0 | 5.19e-01 | 98.5% | 64.8% |
| 5xogK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.71 | 60.0 | 4.99e-01 | 96.9% | 54.0% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 44.0 | 3.47e-01 | 100.0% | 33.1% |
| 4qjvB00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.71 | 58.0 | 5.25e-01 | 98.5% | 64.9% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.71 | 58.0 | 4.84e-01 | 96.9% | 52.2% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.71 | 55.0 | 5.04e-01 | 84.6% | 67.4% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.70 | 60.0 | 4.83e-01 | 100.0% | 79.4% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.70 | 63.0 | 4.97e-01 | 100.0% | 76.7% |
| 1xppD00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.69 | 57.0 | 5.00e-01 | 100.0% | 59.4% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 56.0 | 5.01e-01 | 100.0% | 64.0% |
| 4g6iC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 55.0 | 4.88e-01 | 100.0% | 60.6% |
| 5xogC01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.68 | 60.0 | 4.75e-01 | 100.0% | 76.5% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.68 | 53.0 | 4.00e-01 | 86.2% | 34.5% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.68 | 59.0 | 5.07e-01 | 96.9% | 61.2% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 41.0 | 3.24e-01 | 100.0% | 31.2% |
| 3drxB03 | 3.30.70.2000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 48.0 | 5.22e-01 | 84.6% | 96.1% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.67 | 53.0 | 5.27e-01 | 84.6% | 90.9% |
| 4bfoA00 | 2.60.40.2440 | Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain | 0.67 | 59.0 | 5.05e-01 | 100.0% | 65.1% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.67 | 52.0 | 4.12e-01 | 84.6% | 58.3% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 3.71e-01 | 72.3% | 63.6% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 58.0 | 3.81e-01 | 98.5% | 42.0% |
| 2iusD01 | 3.30.980.40 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.66 | 57.0 | 4.98e-01 | 100.0% | 64.3% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.66 | 51.0 | 5.19e-01 | 84.6% | 93.8% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.66 | 51.0 | 5.07e-01 | 84.6% | 88.2% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 55.0 | 4.91e-01 | 95.4% | 72.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.64 | 55.0 | 5.23e-01 | 100.0% | 96.2% |
| 2q2eB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.64 | 56.0 | 3.93e-01 | 100.0% | 59.7% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.64 | 56.0 | 4.40e-01 | 100.0% | 78.5% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 55.0 | 4.90e-01 | 98.5% | 69.5% |
| 6bq9A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.63 | 54.0 | 4.77e-01 | 100.0% | 66.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.63 | 48.0 | 4.30e-01 | 84.6% | 61.5% |
| 3d3bJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.63 | 48.0 | 4.46e-01 | 86.2% | 66.7% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 41.0 | 3.14e-01 | 100.0% | 28.0% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.62 | 49.0 | 3.99e-01 | 89.2% | 48.9% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.62 | 47.0 | 4.31e-01 | 84.6% | 61.8% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 48.0 | 4.36e-01 | 86.2% | 69.3% |
| 3vmnA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 51.0 | 4.05e-01 | 96.9% | 88.0% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 46.0 | 4.00e-01 | 84.6% | 53.8% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.60 | 52.0 | 3.72e-01 | 100.0% | 41.7% |
| 7pjjA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 53.0 | 4.28e-01 | 100.0% | 52.3% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 50.0 | 4.14e-01 | 98.5% | 63.6% |
| 2pziB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 50.0 | 3.96e-01 | 96.9% | 69.0% |
| 3os7A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 50.0 | 3.23e-01 | 100.0% | 82.8% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 3.46e-01 | 78.5% | 43.0% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 51.0 | 4.42e-01 | 100.0% | 64.4% |
| 2clqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 47.0 | 4.36e-01 | 96.9% | 74.1% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 3.41e-01 | 86.2% | 75.0% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 38.0 | 3.01e-01 | 70.8% | 57.6% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 46.0 | 4.37e-01 | 90.8% | 88.5% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.54e-01 | 100.0% | 90.4% |
| 1jovA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 48.0 | 3.24e-01 | 100.0% | 71.4% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 45.0 | 4.22e-01 | 98.5% | 78.2% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 2.98e-01 | 93.8% | 58.7% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 3.80e-01 | 96.9% | 69.8% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 42.0 | 3.18e-01 | 89.2% | 84.8% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 2.98e-01 | 98.5% | 59.5% |
| 1sh8B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 44.0 | 3.49e-01 | 100.0% | 54.4% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 43.0 | 2.88e-01 | 100.0% | 58.7% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 44.0 | 3.92e-01 | 98.5% | 67.7% |
| 4hikA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 40.0 | 3.09e-01 | 100.0% | 39.1% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 41.0 | 3.47e-01 | 96.9% | 55.5% |
| 1s28A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 40.0 | 3.36e-01 | 93.8% | 47.7% |
ECOD (99)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973260 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.95 | 91.0 | 7.03e-01 | 100.0% | 53.6% |
| 3964190 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.94 | 87.0 | 6.17e-01 | 100.0% | 38.2% |
| 3839205 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.88 | 77.0 | 6.11e-01 | 100.0% | 50.8% |
| 3946792 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.85 | 75.0 | 6.11e-01 | 98.5% | 53.9% |
| 3981553 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.85 | 75.0 | 6.09e-01 | 98.5% | 53.9% |
| 3984013 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.84 | 74.0 | 6.86e-01 | 98.5% | 77.5% |
| 5035224 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.83 | 61.0 | 5.41e-01 | 76.9% | 62.2% |
| 197096 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.83 | 76.0 | 5.86e-01 | 100.0% | 54.8% |
| 2128076 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.82 | 75.0 | 5.74e-01 | 100.0% | 54.6% |
| 330634 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.82 | 60.0 | 5.31e-01 | 76.9% | 62.6% |
| 4966477 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.82 | 63.0 | 5.47e-01 | 84.6% | 55.8% |
| None | — | 0.81 | 74.0 | 6.37e-01 | 100.0% | 74.0% | |
| 3164985 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.81 | 69.0 | 5.12e-01 | 100.0% | 38.1% |
| 3270398 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.80 | 56.0 | 5.06e-01 | 73.8% | 61.8% |
| 4602550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.80 | 69.0 | 6.02e-01 | 100.0% | 64.2% |
| 4953055 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.80 | 62.0 | 5.94e-01 | 83.1% | 73.3% |
| 4636724 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.80 | 63.0 | 5.52e-01 | 84.6% | 59.6% |
| 4096709 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.79 | 62.0 | 5.44e-01 | 84.6% | 58.9% |
| 2607848 | 304.134.1.1 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N | 0.79 | 62.0 | 5.75e-01 | 84.6% | 67.9% |
| 4217713 | 327.21.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › SpoIIE regulatory domain › SpoIIE regulatory domain › PF31108 | 0.78 | 69.0 | 6.34e-01 | 98.5% | 78.8% |
| 4112011 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.78 | 70.0 | 6.28e-01 | 100.0% | 72.2% |
| 3456962 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.78 | 66.0 | 6.06e-01 | 100.0% | 72.6% |
| 3305434 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.78 | 66.0 | 5.87e-01 | 96.9% | 66.7% |
| 4273759 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.78 | 64.0 | 5.53e-01 | 96.9% | 58.6% |
| 3306325 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.78 | 66.0 | 5.93e-01 | 98.5% | 67.8% |
| 3171153 | 304.9.1.163 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF30026 | 0.77 | 54.0 | 4.70e-01 | 72.3% | 68.4% |
| 4010403 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.77 | 68.0 | 6.04e-01 | 100.0% | 68.8% |
| 3839261 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.77 | 69.0 | 5.64e-01 | 100.0% | 58.8% |
| 3823591 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.77 | 70.0 | 6.00e-01 | 100.0% | 68.0% |
| 4403284 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.77 | 60.0 | 5.21e-01 | 84.6% | 56.0% |
| 3434168 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.77 | 65.0 | 5.54e-01 | 98.5% | 58.1% |
| 4045582 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.77 | 60.0 | 5.30e-01 | 84.6% | 61.1% |
| 4048096 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.77 | 60.0 | 5.38e-01 | 84.6% | 63.3% |
| 4063438 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.77 | 61.0 | 5.34e-01 | 84.6% | 62.4% |
| 3450309 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.77 | 66.0 | 5.83e-01 | 96.9% | 65.3% |
| 4079091 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.76 | 60.0 | 5.14e-01 | 84.6% | 57.0% |
| 4239895 | 310.3.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM | 0.76 | 67.0 | 5.69e-01 | 100.0% | 61.0% |
| 3824912 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.76 | 63.0 | 5.90e-01 | 98.5% | 75.0% |
| 4584493 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.76 | 59.0 | 5.20e-01 | 84.6% | 61.1% |
| 3365716 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.76 | 63.0 | 5.78e-01 | 96.9% | 70.6% |
| 2710317 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.75 | 59.0 | 4.98e-01 | 84.6% | 53.7% |
| 138988 | 304.134.1.1 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N | 0.75 | 59.0 | 5.15e-01 | 84.6% | 56.7% |
| 4668692 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.75 | 58.0 | 5.13e-01 | 84.6% | 61.7% |
| 3962580 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.74 | 58.0 | 5.03e-01 | 84.6% | 58.0% |
| 4307206 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.74 | 58.0 | 5.12e-01 | 84.6% | 62.4% |
| 4180852 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.74 | 58.0 | 5.03e-01 | 84.6% | 59.2% |
| 3965111 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.74 | 58.0 | 5.08e-01 | 84.6% | 61.1% |
| 4947208 | 304.134.1.2 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › ArgZ-like_C_1st | 0.73 | 57.0 | 5.49e-01 | 84.6% | 73.3% |
| 4632598 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 65.0 | 5.32e-01 | 100.0% | 56.7% |
| 4503003 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.73 | 57.0 | 4.94e-01 | 84.6% | 58.0% |
| 3367684 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.73 | 58.0 | 5.36e-01 | 98.5% | 68.2% |
| 7178 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.73 | 64.0 | 4.60e-01 | 100.0% | 34.6% |
| 2330628 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.73 | 63.0 | 4.53e-01 | 100.0% | 34.1% |
| 3654284 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.72 | 61.0 | 5.97e-01 | 98.5% | 87.1% |
| 4252405 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.72 | 61.0 | 5.49e-01 | 96.9% | 67.8% |
| 4433673 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.72 | 56.0 | 4.82e-01 | 84.6% | 55.3% |
| 4963370 | 304.134.1.1 ↗ | a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N | 0.72 | 56.0 | 5.24e-01 | 84.6% | 68.8% |
| 4391298 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.72 | 56.0 | 4.94e-01 | 84.6% | 61.7% |
| 4582107 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.72 | 61.0 | 5.41e-01 | 98.5% | 65.3% |
| 3667432 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 61.0 | 5.51e-01 | 100.0% | 69.5% |
| 5119 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.71 | 55.0 | 4.72e-01 | 84.6% | 55.8% |
| 3396478 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 61.0 | 5.24e-01 | 93.8% | 74.0% |
| 5062210 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.71 | 60.0 | 5.40e-01 | 100.0% | 68.9% |
| 4928630 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.70 | 57.0 | 5.22e-01 | 100.0% | 66.7% |
| 5053211 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.70 | 62.0 | 4.64e-01 | 98.5% | 76.9% |
| 4945381 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.70 | 55.0 | 5.04e-01 | 84.6% | 64.7% |
| 5040160 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.70 | 58.0 | 5.08e-01 | 100.0% | 61.0% |
| 3778963 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.69 | 54.0 | 4.44e-01 | 84.6% | 47.5% |
| 3319074 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.69 | 61.0 | 4.84e-01 | 100.0% | 50.4% |
| 5010925 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.69 | 54.0 | 4.00e-01 | 84.6% | 34.5% |
| 4956118 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.69 | 52.0 | 4.83e-01 | 84.6% | 63.5% |
| 3966637 | 304.156.1.0 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain | 0.69 | 60.0 | 5.16e-01 | 100.0% | 63.0% |
| 5038336 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.69 | 56.0 | 5.08e-01 | 100.0% | 66.7% |
| 4938975 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.68 | 61.0 | 5.31e-01 | 100.0% | 65.7% |
| 5016148 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.68 | 54.0 | 4.81e-01 | 89.2% | 61.1% |
| 5035806 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.67 | 56.0 | 5.07e-01 | 100.0% | 67.8% |
| 4195003 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.67 | 56.0 | 5.04e-01 | 100.0% | 67.8% |
| 1150284 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.67 | 58.0 | 4.93e-01 | 100.0% | 71.8% |
| 4253075 | 304.156.1.1 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › FtsK_alpha | 0.67 | 57.0 | 5.00e-01 | 100.0% | 63.0% |
| 5000402 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.67 | 56.0 | 4.77e-01 | 100.0% | 56.4% |
| 3305495 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.67 | 57.0 | 3.65e-01 | 100.0% | 48.1% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.66 | 56.0 | 4.98e-01 | 100.0% | 72.7% |
| 3167609 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.66 | 51.0 | 4.83e-01 | 86.2% | 71.2% |
| 5042725 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.66 | 54.0 | 4.92e-01 | 98.5% | 66.7% |
| 4997777 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 52.0 | 4.78e-01 | 98.5% | 68.2% |
| 4059572 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.65 | 57.0 | 4.83e-01 | 100.0% | 74.5% |
| 4142447 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.64 | 56.0 | 4.92e-01 | 100.0% | 86.0% |
| 4409111 | 11.1.1.66 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MdoG | 0.63 | 57.0 | 4.94e-01 | 100.0% | 68.4% |
| 5048995 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.63 | 49.0 | 2.99e-01 | 84.6% | 14.4% |
| 4629783 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.62 | 55.0 | 4.53e-01 | 100.0% | 77.5% |
| 4250657 | 513.2.1.0 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Putative transferase PH0793 N-terminal domain › Putative transferase PH0793 N-terminal domain | 0.61 | 53.0 | 3.40e-01 | 98.5% | 27.0% |
| 4212314 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.61 | 52.0 | 4.62e-01 | 100.0% | 85.0% |
| 5058881 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 47.0 | 2.95e-01 | 86.2% | 15.9% |
| 4026339 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.61 | 51.0 | 4.08e-01 | 100.0% | 46.6% |
| 4096306 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.61 | 52.0 | 4.43e-01 | 100.0% | 77.4% |
| 5031636 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.60 | 52.0 | 4.30e-01 | 100.0% | 80.0% |
| 5001077 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.60 | 51.0 | 4.17e-01 | 98.5% | 80.0% |
| 4941329 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.59 | 52.0 | 4.51e-01 | 100.0% | 89.0% |
| 4023487 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 44.0 | 3.11e-01 | 96.9% | 25.6% |
D2
medium
residues 18-111
Domain cluster:
representative