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CAKLQF020000004.1__CAH1076965.1__SAMEA5780031_01119__00209
Bact-VirCAKLQF020000004.1__CAH1076965.1__SAMEA5780031_01119__00209
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-105
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09371.16 best | Tex_N | 102.9 | 8.30e-30 | 71.4% | 98.7% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.94 | 90.0 | 8.73e-01 | 99.0% | 97.3% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.63 | 44.0 | 4.45e-01 | 72.4% | 93.3% |
| 3kp7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 3.89e-01 | 70.5% | 69.3% |
| 2hs5A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.62 | 32.0 | 2.87e-01 | 88.6% | 35.7% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.81e-01 | 70.5% | 72.9% |
| 3n0uA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.57 | 43.0 | 4.32e-01 | 91.4% | 78.9% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 31.0 | 2.87e-01 | 88.6% | 42.0% |
| 4l6v600 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.51 | 42.0 | 4.02e-01 | 98.1% | 75.2% |
| 2g7sA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 41.0 | 3.39e-01 | 86.7% | 68.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988499 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.98 | 40.0 | 6.21e-01 | 99.0% | 88.0% |
| 3773107 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.82 | 39.0 | 5.82e-01 | 99.0% | 100.0% |
| 1935160 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.64 | 45.0 | 4.79e-01 | 71.4% | 83.3% |
| 3766742 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 44.0 | 4.29e-01 | 88.6% | 73.0% |
| 3296 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.56 | 31.0 | 2.87e-01 | 88.6% | 42.0% |
| 5019397 | 5067.1.1.12 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 | 0.55 | 46.0 | 3.54e-01 | 92.4% | 41.3% |
| 3714442 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.52 | 45.0 | 3.33e-01 | 90.5% | 70.4% |
| 5032512 | 5086.1.1.234 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CdvA | 0.51 | 41.0 | 3.73e-01 | 84.8% | 85.2% |
D2
high
residues 636-709
Domain cluster:
rep: IMGVR_UViG_3300009669_000608-3300009669-Ga0116148_10207294__D167-241
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00575.30 best | S1 | 82.7 | 2.80e-23 | 97.3% | 94.6% |
| PF23459.2 | S1_RRP5 | 41.5 | 2.30e-10 | 96.0% | 98.6% |
D3
medium
residues 183-237
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22706.2 best | Tex_central_region | 67.6 | 2.00e-18 | 100.0% | 28.6% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzcA02 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.93 | 86.0 | 5.31e-01 | 100.0% | 20.8% |
| 5v7qZ00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.65 | 55.0 | 5.45e-01 | 100.0% | 100.0% |
| 5d6eA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 4.84e-01 | 100.0% | 86.3% |
| 2q8kA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.95e-01 | 92.7% | 100.0% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 4.64e-01 | 98.2% | 98.6% |
| 4ipaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 4.74e-01 | 92.7% | 100.0% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.59 | 49.0 | 3.82e-01 | 100.0% | 93.6% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.59 | 39.0 | 4.18e-01 | 100.0% | 100.0% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.59 | 43.0 | 4.53e-01 | 96.4% | 100.0% |
| 1kn6A00 | 3.30.70.850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain | 0.59 | 47.0 | 4.45e-01 | 98.2% | 100.0% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 48.0 | 4.16e-01 | 96.4% | 89.4% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.35e-01 | 100.0% | 81.7% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 47.0 | 4.15e-01 | 98.2% | 83.3% |
| 1nrkA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.57 | 47.0 | 4.13e-01 | 94.5% | 98.9% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 3.99e-01 | 100.0% | 88.0% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 4.23e-01 | 100.0% | 93.8% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 47.0 | 4.27e-01 | 96.4% | 92.4% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 48.0 | 4.52e-01 | 100.0% | 82.6% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 4.02e-01 | 100.0% | 93.7% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.90e-01 | 100.0% | 95.3% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.56 | 47.0 | 4.25e-01 | 96.4% | 92.1% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 4.11e-01 | 96.4% | 90.4% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.89e-01 | 100.0% | 93.8% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 45.0 | 3.75e-01 | 100.0% | 62.3% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 44.0 | 3.88e-01 | 100.0% | 85.4% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.55 | 45.0 | 4.14e-01 | 100.0% | 84.6% |
| 4ezeB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 45.0 | 2.95e-01 | 98.2% | 26.3% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 44.0 | 3.95e-01 | 100.0% | 88.8% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 43.0 | 4.04e-01 | 94.5% | 100.0% |
| 3lo3A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.87e-01 | 100.0% | 96.8% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.83e-01 | 98.2% | 85.3% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.54 | 44.0 | 4.21e-01 | 100.0% | 85.1% |
| 4oj8B00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.53 | 45.0 | 2.97e-01 | 100.0% | 20.7% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.72e-01 | 100.0% | 91.8% |
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 3.06e-01 | 100.0% | 41.9% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 40.0 | 2.48e-01 | 85.5% | 69.4% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 41.0 | 3.76e-01 | 100.0% | 97.6% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.51 | 33.0 | 3.32e-01 | 98.2% | 59.6% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 42.0 | 4.00e-01 | 98.2% | 89.6% |
| 3ty5A01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 43.0 | 2.77e-01 | 100.0% | 73.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3415245 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.99 | 81.0 | 5.24e-01 | 100.0% | 23.5% |
| 4902 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.98 | 92.0 | 5.90e-01 | 100.0% | 26.0% |
| 4031329 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.93 | 87.0 | 5.60e-01 | 100.0% | 25.7% |
| 3884886 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.92 | 88.0 | 5.59e-01 | 100.0% | 30.9% |
| 3988500 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.91 | 85.0 | 5.60e-01 | 100.0% | 28.4% |
| 3506390 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.91 | 84.0 | 5.43e-01 | 100.0% | 35.0% |
| 3475182 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.91 | 80.0 | 5.20e-01 | 100.0% | 25.5% |
| 3218214 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.90 | 83.0 | 5.49e-01 | 100.0% | 31.5% |
| 3608736 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.90 | 85.0 | 5.41e-01 | 100.0% | 28.9% |
| 3617550 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.90 | 83.0 | 5.42e-01 | 100.0% | 30.0% |
| 3596445 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.89 | 84.0 | 5.52e-01 | 100.0% | 34.4% |
| 4890111 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.84 | 75.0 | 5.19e-01 | 100.0% | 32.6% |
| 3613665 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.73 | 62.0 | 3.70e-01 | 100.0% | 85.1% |
| 4023634 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 60.0 | 4.45e-01 | 96.4% | 100.0% |
| 3982374 | 101.1.2.190 ↗ | alpha arrays › HTH › HTH › winged helix domain › PriA-like_WH | 0.67 | 59.0 | 5.35e-01 | 100.0% | 90.7% |
| 3588325 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 5.58e-01 | 96.4% | 100.0% |
| 3230414 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.66 | 57.0 | 4.59e-01 | 100.0% | 54.9% |
| 3164772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 5.13e-01 | 100.0% | 90.0% |
| 5074567 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 52.0 | 4.14e-01 | 96.4% | 100.0% |
| 4284094 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 54.0 | 5.43e-01 | 98.2% | 98.2% |
| 4417687 | 7516.1.1.102 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, Glyco_trans_2_3 | 0.60 | 53.0 | 3.12e-01 | 100.0% | 12.2% |
| 4025128 | 304.7.1.24 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30120 | 0.60 | 50.0 | 4.53e-01 | 100.0% | 95.0% |
| 4991070 | 304.8.1.43 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 | 0.59 | 47.0 | 4.46e-01 | 92.7% | 100.0% |
| 5036239 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.61e-01 | 89.1% | 94.5% |
| 3964951 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.59 | 49.0 | 4.56e-01 | 100.0% | 100.0% |
| 3210590 | 304.160.1.3 ↗ | a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › PF28298 | 0.58 | 49.0 | 3.77e-01 | 100.0% | 83.7% |
| 3578583 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.58 | 46.0 | 3.31e-01 | 98.2% | 98.0% |
| 3399432 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.57 | 40.0 | 3.65e-01 | 100.0% | 52.5% |
| 1291966 | 304.7.1.5 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › SUB1_ProdP9 | 0.57 | 46.0 | 4.23e-01 | 100.0% | 93.8% |
| 4021062 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 46.0 | 4.54e-01 | 100.0% | 98.3% |
| 4934084 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.56 | 41.0 | 2.77e-01 | 78.2% | 73.2% |
| 3245549 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.56 | 44.0 | 4.04e-01 | 98.2% | 81.2% |
| 4012791 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 46.0 | 4.21e-01 | 100.0% | 93.8% |
| 4934810 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 46.0 | 4.15e-01 | 96.4% | 92.5% |
| 3285016 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.56 | 44.0 | 3.98e-01 | 100.0% | 91.1% |
| 4344629 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 42.0 | 3.69e-01 | 87.3% | 76.7% |
| 2575510 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 44.0 | 3.91e-01 | 100.0% | 84.0% |
| 1873681 | 231.1.1.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 | 0.54 | 42.0 | 2.75e-01 | 89.1% | 79.6% |
| 4014963 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 47.0 | 4.08e-01 | 100.0% | 95.3% |
| 3277841 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.53 | 40.0 | 3.91e-01 | 100.0% | 75.4% |
| 4180139 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.53 | 41.0 | 3.75e-01 | 96.4% | 88.2% |
| 4263573 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.52 | 39.0 | 3.67e-01 | 90.9% | 97.3% |
| 4594531 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 41.0 | 3.68e-01 | 100.0% | 89.9% |
| 3737625 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.88e-01 | 92.7% | 98.3% |
| 4935321 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 41.0 | 4.06e-01 | 100.0% | 100.0% |
| 4935238 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 41.0 | 3.77e-01 | 100.0% | 96.2% |
| 4818712 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.50 | 38.0 | 3.83e-01 | 85.5% | 100.0% |
D4
medium
residues 557-614
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17674.8 best | HHH_9 | 61.3 | 1.90e-16 | 100.0% | 82.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzcA04 | 1.10.150.310 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tex RuvX-like domain-like | 0.96 | 90.0 | 6.67e-01 | 100.0% | 43.9% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 43.0 | 3.98e-01 | 70.7% | 90.9% |
| 1x57A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 40.0 | 3.52e-01 | 70.7% | 86.8% |
| 1z00B00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 44.0 | 4.02e-01 | 100.0% | 58.3% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 45.0 | 4.43e-01 | 100.0% | 98.5% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 48.0 | 4.00e-01 | 100.0% | 66.7% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.55 | 46.0 | 4.07e-01 | 100.0% | 72.2% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 43.0 | 4.05e-01 | 94.8% | 84.8% |
| 2bgwA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 41.0 | 3.96e-01 | 100.0% | 71.6% |
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 35.0 | 3.28e-01 | 91.4% | 53.2% |
| 2ii2A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 39.0 | 3.50e-01 | 94.8% | 91.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947571 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.99 | 94.0 | 8.25e-01 | 100.0% | 72.5% |
| 3403653 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.87 | 81.0 | 6.84e-01 | 100.0% | 73.3% |
| 3987508 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.80 | 73.0 | 6.67e-01 | 100.0% | 77.3% |
| 4365142 | 102.8.1.1 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 | 0.73 | 55.0 | 4.80e-01 | 100.0% | 55.3% |
| 4597170 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.64 | 49.0 | 4.64e-01 | 100.0% | 70.0% |
| 4518665 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 48.0 | 4.69e-01 | 100.0% | 75.4% |
| 4381672 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.63 | 46.0 | 4.53e-01 | 100.0% | 75.0% |
| 4312504 | 102.1.1.3 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH | 0.63 | 48.0 | 4.61e-01 | 100.0% | 73.5% |
| 4635442 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 49.0 | 4.69e-01 | 100.0% | 75.4% |
| 4039032 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 46.0 | 4.37e-01 | 100.0% | 65.3% |
| 4084939 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.61 | 44.0 | 4.28e-01 | 100.0% | 70.8% |
| 3500434 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 4.82e-01 | 98.3% | 91.7% |
| 4456347 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 44.0 | 3.85e-01 | 100.0% | 50.0% |
| 3315573 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.58 | 45.0 | 4.54e-01 | 100.0% | 88.3% |
| 4356957 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.58 | 46.0 | 3.98e-01 | 100.0% | 55.0% |
| 4420423 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.57 | 40.0 | 3.04e-01 | 75.9% | 91.6% |
| 3738459 | 6088.1.1.1 ↗ | alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB | 0.56 | 48.0 | 4.40e-01 | 100.0% | 92.5% |
| 4209900 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.55 | 42.0 | 4.13e-01 | 100.0% | 81.5% |
| 4266846 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.55 | 41.0 | 4.09e-01 | 100.0% | 80.0% |
| 3691898 | 109.4.1.330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C | 0.51 | 38.0 | 2.62e-01 | 84.5% | 32.5% |