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CAKLQF020000004.1__CAH1077004.1__SAMEA5780031_01143__00231

Bact-Vir

CAKLQF020000004.1__CAH1077004.1__SAMEA5780031_01143__00231

Identity

Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-59
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.79 46.0 4.77e-01 100.0% 63.0%
7yj5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.74 40.0 2.79e-01 98.0% 16.8%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 50.0 4.08e-01 100.0% 40.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 52.0 4.07e-01 77.6% 84.0%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 49.0 3.17e-01 77.6% 99.1%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.66 55.0 3.72e-01 98.0% 86.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 38.0 3.26e-01 85.7% 35.4%
2dgmA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.63 51.0 3.16e-01 89.8% 51.4%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 49.0 3.20e-01 89.8% 44.5%
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 54.0 2.91e-01 100.0% 6.4%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 55.0 3.45e-01 100.0% 45.7%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.62 50.0 3.94e-01 100.0% 79.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 49.0 4.00e-01 87.8% 77.7%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 54.0 3.78e-01 98.0% 85.0%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 53.0 4.16e-01 95.9% 54.1%
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.60 49.0 3.26e-01 89.8% 28.2%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.60 52.0 3.62e-01 100.0% 95.3%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 51.0 4.67e-01 100.0% 97.1%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 3.35e-01 93.9% 25.8%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 48.0 3.29e-01 93.9% 72.3%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 49.0 3.54e-01 100.0% 59.4%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 49.0 3.13e-01 100.0% 26.4%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 47.0 3.30e-01 93.9% 80.5%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.57 46.0 2.93e-01 98.0% 93.5%
3bf5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 41.0 2.70e-01 79.6% 17.2%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.57 52.0 2.95e-01 100.0% 42.4%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.19e-01 89.8% 32.8%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.09e-01 81.6% 95.7%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.56 45.0 4.03e-01 100.0% 85.9%
3h5xA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.56 43.0 3.50e-01 85.7% 63.2%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 46.0 3.52e-01 93.9% 84.9%
2f7aA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 3.60e-01 100.0% 76.0%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 45.0 2.90e-01 93.9% 32.7%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.55 49.0 4.01e-01 100.0% 57.8%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 45.0 2.83e-01 100.0% 60.7%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 2.56e-01 98.0% 28.5%
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.06e-01 100.0% 51.8%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 42.0 2.91e-01 91.8% 46.4%
3ozoA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 45.0 3.11e-01 100.0% 72.3%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.84e-01 95.9% 68.5%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.46e-01 98.0% 86.6%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.18e-01 100.0% 62.4%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 2.60e-01 93.9% 54.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 46.0 3.50e-01 100.0% 47.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.26e-01 89.8% 100.0%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 39.0 3.04e-01 91.8% 65.2%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.38e-01 91.8% 55.6%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.50 34.0 3.88e-01 87.8% 100.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.79 57.0 4.16e-01 77.6% 53.1%
3656580 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.76 53.0 3.56e-01 73.5% 27.4%
3613140 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.74 54.0 3.16e-01 77.6% 12.7%
3287378 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.73 52.0 3.29e-01 77.6% 18.8%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 53.0 3.66e-01 100.0% 25.2%
3946654 517.2.1.0 beta barrels › CBF-like › TraF › TraF 0.71 51.0 3.17e-01 77.6% 22.9%
3598612 220.1.1.230 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.67 53.0 4.30e-01 85.7% 96.7%
3398485 3939.1.1.16 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Ax_dynein_light 0.66 54.0 3.62e-01 89.8% 35.1%
3680215 109.4.1.880 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th 0.66 55.0 3.01e-01 100.0% 6.5%
4997639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 3.80e-01 89.8% 37.1%
3723552 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.66 54.0 3.18e-01 98.0% 32.8%
3368548 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 45.0 2.85e-01 93.9% 14.7%
5065366 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 54.0 4.10e-01 95.9% 53.3%
3430287 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.63 51.0 3.14e-01 93.9% 14.4%
4002410 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 49.0 3.52e-01 87.8% 66.7%
3739717 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 49.0 4.13e-01 87.8% 75.3%
5045039 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.61 51.0 3.43e-01 93.9% 26.0%
3587620 304.55.1.22 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL 0.61 46.0 3.04e-01 100.0% 19.5%
3309917 109.4.1.2594 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, PPR_long, E_motif 0.60 47.0 2.67e-01 87.8% 7.6%
4254993 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 54.0 4.26e-01 100.0% 61.0%
4088180 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 46.0 3.89e-01 85.7% 75.3%
3325708 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.60 48.0 2.97e-01 87.8% 25.6%
3960355 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 40.0 2.77e-01 83.7% 21.9%
3667031 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 50.0 4.35e-01 95.9% 70.7%
3378291 109.4.1.2216 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif 0.58 51.0 2.91e-01 100.0% 43.7%
4085280 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 50.0 4.26e-01 98.0% 78.8%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.58 48.0 2.79e-01 100.0% 45.7%
3314246 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.58 46.0 2.81e-01 87.8% 15.8%
5039979 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.58 46.0 3.49e-01 95.9% 66.7%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.57 47.0 4.28e-01 91.8% 76.9%
3728757 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 50.0 4.22e-01 98.0% 71.2%
4959353 2498.1.1.58 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N 0.56 47.0 3.28e-01 100.0% 56.8%
3680994 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.56 45.0 2.76e-01 93.9% 19.3%
3927940 304.36.1.2 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.55 50.0 3.87e-01 100.0% 48.6%
3684317 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.55 46.0 2.60e-01 100.0% 45.1%
3911603 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 44.0 3.24e-01 100.0% 29.7%
5041727 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 41.0 2.92e-01 83.7% 38.1%
3593801 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 46.0 3.22e-01 100.0% 36.2%
4932873 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 44.0 2.89e-01 91.8% 37.2%
5039488 327.7.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C 0.51 38.0 3.78e-01 93.9% 81.8%
4968561 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 38.0 2.63e-01 81.6% 41.1%
5072289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 2.99e-01 89.8% 35.0%
4947949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.19e-01 83.7% 50.0%