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CAKLQF020000005.1__CAH1077945.1__SAMEA5780031_01170__00018

Bact-Vir

CAKLQF020000005.1__CAH1077945.1__SAMEA5780031_01170__00018

Identity

Kingdom:
phage

Quality

63.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 132-183
PDB
Domain cluster: representative
CATH (74)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.79 55.0 4.05e-01 75.0% 29.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 57.0 5.07e-01 100.0% 58.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 51.0 4.37e-01 98.1% 49.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.66 48.0 3.31e-01 78.8% 23.6%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.66 56.0 4.17e-01 100.0% 48.9%
4ehoA04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 46.0 3.54e-01 75.0% 32.3%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 45.0 3.52e-01 75.0% 34.2%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 3.93e-01 75.0% 50.0%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.64 57.0 4.10e-01 100.0% 38.9%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.64 45.0 3.98e-01 76.9% 74.1%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 49.0 3.16e-01 90.4% 33.7%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 3.60e-01 100.0% 33.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 44.0 4.63e-01 75.0% 87.0%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 4.80e-01 98.1% 81.5%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.61 52.0 3.98e-01 98.1% 87.1%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.59e-01 100.0% 38.9%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 40.0 3.14e-01 75.0% 30.2%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 3.74e-01 78.8% 47.7%
4yisB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 43.0 3.27e-01 78.8% 42.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 38.0 3.54e-01 76.9% 49.3%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 51.0 3.45e-01 100.0% 70.2%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.53e-01 100.0% 38.5%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 50.0 3.64e-01 100.0% 70.9%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 47.0 3.19e-01 98.1% 82.5%
5hwtB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 3.20e-01 75.0% 34.4%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 3.57e-01 98.1% 35.6%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.58 46.0 4.19e-01 100.0% 73.5%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.37e-01 75.0% 37.5%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.06e-01 75.0% 34.6%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 45.0 3.83e-01 90.4% 65.6%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 46.0 3.47e-01 100.0% 34.3%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 3.68e-01 100.0% 36.6%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 40.0 3.25e-01 98.1% 37.0%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 2.99e-01 73.1% 32.5%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 40.0 3.75e-01 76.9% 61.9%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 40.0 3.18e-01 98.1% 35.6%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.46e-01 100.0% 86.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 2.89e-01 100.0% 27.5%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 3.75e-01 100.0% 79.3%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 39.0 3.21e-01 98.1% 39.0%
3racA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 40.0 2.49e-01 80.8% 50.7%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 3.76e-01 100.0% 50.0%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 48.0 3.73e-01 100.0% 84.0%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.54 44.0 3.52e-01 100.0% 95.1%
4hh2C04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 2.97e-01 75.0% 33.3%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.42e-01 94.2% 67.2%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 3.45e-01 100.0% 39.1%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 41.0 3.41e-01 98.1% 44.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.49e-01 96.2% 51.8%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 2.74e-01 100.0% 28.0%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.53 44.0 3.65e-01 100.0% 72.5%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 42.0 2.93e-01 100.0% 87.5%
4zk3A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 44.0 3.42e-01 100.0% 63.0%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 37.0 2.40e-01 80.8% 65.0%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 44.0 3.10e-01 100.0% 87.8%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.31e-01 100.0% 45.7%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.16e-01 98.1% 46.0%
4mj3B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.66e-01 92.3% 23.8%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.56e-01 100.0% 48.2%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 46.0 3.58e-01 100.0% 48.3%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.58e-01 100.0% 52.3%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 45.0 3.43e-01 100.0% 60.5%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 2.86e-01 75.0% 30.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 45.0 3.76e-01 100.0% 76.7%
2pd8B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.26e-01 100.0% 39.3%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 3.39e-01 100.0% 45.5%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.13e-01 98.1% 35.1%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 40.0 3.13e-01 100.0% 70.7%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 3.38e-01 100.0% 45.5%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.34e-01 98.1% 89.0%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.50 42.0 2.71e-01 100.0% 61.8%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 42.0 3.17e-01 100.0% 37.7%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 43.0 3.47e-01 100.0% 56.1%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.50e-01 100.0% 76.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061316 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.76 54.0 4.01e-01 75.0% 30.0%
4969129 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.73 52.0 4.10e-01 75.0% 38.1%
3971184 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.71 50.0 3.68e-01 75.0% 28.6%
5018462 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.67 47.0 3.04e-01 75.0% 15.0%
3607858 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 54.0 4.47e-01 100.0% 48.6%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 55.0 4.79e-01 100.0% 71.8%
4937053 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 46.0 3.73e-01 78.8% 70.0%
5044926 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.63 44.0 3.52e-01 73.1% 37.1%
3973000 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 43.0 2.96e-01 75.0% 21.1%
4993562 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 54.0 4.31e-01 98.1% 61.9%
5045588 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 53.0 4.06e-01 96.2% 42.5%
5048058 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.62 43.0 3.40e-01 75.0% 34.5%
4965929 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.61 54.0 3.34e-01 100.0% 21.0%
3972990 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 43.0 3.30e-01 75.0% 33.3%
3967615 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 42.0 3.29e-01 75.0% 32.0%
4960088 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 51.0 3.90e-01 96.2% 45.0%
4988390 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 42.0 3.39e-01 75.0% 38.1%
4958152 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 41.0 3.34e-01 76.9% 37.1%
4949373 223.1.1.49 a+b three layers › Profilin-like › sensor domains › sensor domains › HK-GC-Chemotax_sensor 0.58 43.0 2.89e-01 88.5% 53.9%
4939835 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 40.0 3.20e-01 76.9% 37.4%
4950839 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 40.0 2.61e-01 75.0% 13.7%
5021979 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 51.0 3.92e-01 100.0% 48.7%
3967421 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 51.0 3.81e-01 100.0% 53.8%
4682251 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.57 41.0 2.44e-01 76.9% 9.8%
4958961 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 46.0 3.38e-01 96.2% 34.1%
3685774 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 48.0 3.45e-01 98.1% 83.0%
4958862 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 39.0 3.13e-01 76.9% 38.3%
5019275 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 39.0 3.11e-01 76.9% 38.3%
5018490 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 48.0 3.66e-01 100.0% 44.8%
5006334 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 39.0 2.94e-01 75.0% 29.6%
4300729 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.21e-01 100.0% 28.2%
3689179 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 2.92e-01 100.0% 27.4%
3687133 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 46.0 3.50e-01 100.0% 40.7%
3557826 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 46.0 3.42e-01 100.0% 37.9%
5019943 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 46.0 3.55e-01 100.0% 43.8%
4930507 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 38.0 2.98e-01 76.9% 31.2%
5005615 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 37.0 2.84e-01 75.0% 29.2%
3722822 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.69e-01 100.0% 72.6%
3960269 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.53 44.0 3.20e-01 96.2% 33.5%
3497967 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 45.0 3.32e-01 100.0% 35.5%
5018829 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 45.0 3.43e-01 98.1% 43.1%
3280248 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 45.0 3.43e-01 100.0% 42.2%
4160607 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 44.0 2.81e-01 100.0% 16.9%
3971144 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 44.0 3.40e-01 100.0% 44.6%
3967408 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 41.0 3.32e-01 100.0% 40.8%
4965944 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 44.0 2.82e-01 100.0% 17.7%
3959244 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 44.0 3.76e-01 98.1% 62.2%
4979994 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.26e-01 100.0% 39.3%
5002719 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 43.0 3.42e-01 96.2% 45.2%
3257350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.73e-01 82.7% 86.7%
5061581 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.31e-01 92.3% 52.7%
5021006 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 42.0 3.12e-01 96.2% 34.2%
4962862 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 43.0 3.34e-01 96.2% 42.4%
3946851 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 42.0 3.10e-01 96.2% 34.2%
3621160 7505.1.1.1 a/b three-layered sandwiches › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › MKLP1_Arf_bdg 0.51 44.0 3.80e-01 98.1% 88.2%
3262608 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 42.0 3.31e-01 100.0% 40.8%
4957920 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 44.0 3.51e-01 100.0% 49.6%
5019117 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 40.0 3.33e-01 100.0% 44.3%
4929294 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 40.0 2.97e-01 100.0% 69.4%
3968855 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 41.0 3.26e-01 100.0% 40.8%
5020715 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 40.0 3.19e-01 96.2% 40.9%
4931757 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.35e-01 96.2% 42.5%
5062837 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 40.0 3.28e-01 100.0% 41.6%
4980710 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.38e-01 96.2% 47.0%
5034548 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 41.0 3.35e-01 100.0% 45.2%
4142766 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 40.0 3.23e-01 100.0% 40.8%
4959260 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 43.0 3.28e-01 100.0% 41.4%
4927275 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.50 39.0 3.13e-01 96.2% 37.7%
5044347 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 39.0 3.32e-01 100.0% 52.7%
3466098 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.50 40.0 2.58e-01 100.0% 25.3%
4980686 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 42.0 3.45e-01 100.0% 51.8%
D2 medium residues 184-307
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.83 78.0 5.40e-01 99.2% 47.0%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.82 77.0 5.41e-01 100.0% 44.4%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.81 77.0 5.14e-01 100.0% 44.0%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.80 75.0 5.31e-01 100.0% 43.5%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.79 74.0 5.19e-01 100.0% 49.6%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.78 73.0 5.19e-01 100.0% 44.3%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.78 67.0 5.21e-01 91.1% 60.4%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.77 67.0 5.08e-01 91.1% 54.6%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.76 70.0 4.79e-01 100.0% 41.4%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.76 69.0 5.03e-01 97.6% 51.6%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.76 67.0 4.91e-01 92.7% 51.7%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.75 69.0 4.70e-01 100.0% 44.7%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.75 70.0 5.16e-01 100.0% 46.2%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.75 70.0 5.13e-01 100.0% 43.8%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.72 66.0 4.30e-01 98.4% 45.5%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.72 67.0 4.64e-01 100.0% 50.9%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.71 65.0 4.48e-01 100.0% 39.2%
2ynkA00 2.40.160.130 Mainly Beta › Beta Barrel › Porin › Capsule assembly protein Wzi 0.70 64.0 4.34e-01 100.0% 43.3%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.70 60.0 4.74e-01 92.7% 60.6%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 57.0 5.24e-01 87.1% 80.3%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.68 55.0 5.14e-01 85.5% 80.3%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 57.0 5.25e-01 95.2% 73.2%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 50.0 4.72e-01 80.6% 78.9%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.64 52.0 5.13e-01 86.3% 80.9%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.63 50.0 4.27e-01 85.5% 86.8%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 50.0 3.71e-01 83.1% 95.5%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.62 47.0 4.63e-01 81.5% 72.6%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.62 50.0 4.85e-01 84.7% 79.1%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.62 51.0 4.57e-01 88.7% 87.4%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.62 44.0 4.59e-01 87.1% 80.0%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.61 50.0 4.91e-01 87.1% 81.2%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 47.0 4.81e-01 86.3% 84.2%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 46.0 4.75e-01 86.3% 83.9%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.60 49.0 3.81e-01 86.3% 47.5%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 50.0 4.52e-01 91.1% 67.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 4.13e-01 86.3% 63.7%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.59 54.0 4.18e-01 99.2% 70.3%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 48.0 4.23e-01 87.1% 80.8%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 4.14e-01 79.0% 90.3%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.58 45.0 3.81e-01 81.5% 79.6%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 48.0 4.41e-01 87.1% 77.4%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.10e-01 75.0% 100.0%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.92e-01 74.2% 95.8%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.70e-01 70.2% 83.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 42.0 3.97e-01 85.5% 66.5%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 43.0 3.42e-01 90.3% 90.3%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 38.0 3.94e-01 88.7% 83.1%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.63e-01 73.4% 99.2%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.61e-01 74.2% 94.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4044109 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.83 77.0 5.49e-01 99.2% 42.6%
4319395 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.83 77.0 5.43e-01 99.2% 42.9%
3968185 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.81 66.0 4.37e-01 84.7% 65.2%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.80 74.0 5.89e-01 100.0% 69.6%
3404731 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.79 71.0 6.18e-01 100.0% 65.6%
3966665 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.79 74.0 4.97e-01 100.0% 59.4%
4480962 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.78 68.0 4.98e-01 91.1% 49.0%
4662377 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.78 73.0 5.40e-01 100.0% 51.0%
4069053 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.78 72.0 5.23e-01 99.2% 42.5%
4008277 5084.5.1.62 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 0.78 70.0 5.08e-01 99.2% 37.2%
3971437 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.78 66.0 5.41e-01 91.9% 51.4%
4034405 5084.5.2.0 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.77 69.0 4.60e-01 100.0% 26.4%
3396582 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.76 70.0 4.95e-01 96.8% 50.3%
1716664 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.76 70.0 4.74e-01 98.4% 34.4%
3574877 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.75 58.0 4.29e-01 96.0% 32.3%
888 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.75 70.0 5.16e-01 100.0% 46.2%
4882520 5084.1.1.2 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.75 59.0 5.23e-01 96.0% 58.1%
3804993 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.75 70.0 5.04e-01 100.0% 53.1%
3969139 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.75 69.0 4.63e-01 100.0% 40.0%
4873102 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.74 55.0 5.49e-01 89.5% 73.8%
4571005 5084.5.1.66 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF2490 0.72 67.0 5.61e-01 99.2% 71.9%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.71 54.0 4.84e-01 79.8% 75.9%
1734923 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.70 65.0 4.45e-01 100.0% 50.6%
3429047 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.70 65.0 4.82e-01 100.0% 51.3%
2029638 71.2.1.2 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like 0.69 64.0 5.03e-01 99.2% 54.5%
3651800 71.1.1.12 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.69 56.0 5.32e-01 87.1% 89.0%
4217278 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.68 62.0 4.57e-01 100.0% 67.7%
3173251 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.68 54.0 4.84e-01 83.9% 70.0%
3803010 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 60.0 4.73e-01 100.0% 87.5%
4961667 5084.1.1.45 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.66 43.0 4.54e-01 86.3% 72.2%
5018057 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.66 53.0 5.39e-01 85.5% 85.4%
3349123 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.66 51.0 3.43e-01 81.5% 45.3%
4928614 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.65 54.0 5.34e-01 86.3% 84.4%
4928158 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.65 53.0 5.21e-01 86.3% 80.5%
4971555 9.13.1.3 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.64 54.0 5.14e-01 89.5% 81.2%
4224449 5084.1.1.29 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.63 48.0 4.21e-01 78.2% 70.1%
4270236 5084.1.1.7 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP 0.63 48.0 4.36e-01 79.8% 67.9%
4643725 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.62 50.0 4.23e-01 87.1% 81.0%
2716251 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.61 44.0 4.48e-01 87.1% 75.8%
4222629 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 46.0 4.28e-01 78.2% 76.1%
4012048 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 46.0 3.25e-01 78.2% 37.7%
875 9.13.1.3 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.61 50.0 4.91e-01 87.1% 81.2%
3056279 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.60 46.0 4.28e-01 81.5% 72.4%
1117891 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.60 47.0 4.80e-01 87.1% 83.6%
3980468 5084.1.1.9 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.59 45.0 4.08e-01 79.0% 69.1%
4174055 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.59 48.0 4.17e-01 86.3% 78.3%
3838164 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.58 47.0 4.11e-01 87.1% 77.8%
3701390 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.57 43.0 3.53e-01 81.5% 47.3%
4063158 5084.1.1.7 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP 0.53 42.0 3.82e-01 85.5% 62.4%
3226144 243.1.1.82 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.53 37.0 3.40e-01 71.0% 89.9%
3798282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 36.0 3.59e-01 72.6% 100.0%
5037445 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 43.0 3.32e-01 91.1% 92.7%