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CAKLQF020000005.1__CAH1078047.1__SAMEA5780031_01204__00052

Bact-Vir

CAKLQF020000005.1__CAH1078047.1__SAMEA5780031_01204__00052

Identity

Kingdom:
phage

Quality

63.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-27_51-83
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.86 70.0 6.98e-01 86.7% 96.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 72.0 6.80e-01 95.0% 100.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 69.0 6.46e-01 93.3% 100.0%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 72.0 6.72e-01 100.0% 78.7%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.82 73.0 5.52e-01 100.0% 52.9%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 63.0 5.85e-01 90.0% 80.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 68.0 6.30e-01 96.7% 97.3%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 68.0 6.81e-01 100.0% 98.4%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.77 54.0 5.88e-01 75.0% 100.0%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.77 68.0 4.86e-01 100.0% 34.3%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 67.0 5.95e-01 100.0% 95.5%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.77 64.0 6.51e-01 91.7% 98.3%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.76 56.0 5.93e-01 93.3% 94.1%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 65.0 6.02e-01 100.0% 77.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 65.0 6.09e-01 100.0% 85.7%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.74 65.0 6.16e-01 100.0% 90.3%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 66.0 6.04e-01 100.0% 76.2%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.74 56.0 5.06e-01 81.7% 61.7%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 57.0 5.69e-01 100.0% 82.3%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 61.0 6.08e-01 96.7% 96.8%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 59.0 5.19e-01 100.0% 71.4%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 58.0 4.13e-01 96.7% 30.3%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 57.0 5.62e-01 100.0% 95.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.67 56.0 4.95e-01 98.3% 62.6%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 54.0 5.48e-01 96.7% 100.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3693881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 73.0 7.00e-01 100.0% 91.4%
3253483 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 73.0 6.97e-01 100.0% 91.4%
5048590 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 73.0 5.89e-01 100.0% 81.8%
4945931 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 72.0 6.81e-01 100.0% 91.4%
4031046 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.79 70.0 7.07e-01 98.3% 100.0%
3987802 192.7.1.1 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.79 70.0 7.05e-01 98.3% 100.0%
4568335 3812.1.1.8 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › DUF5398 0.77 64.0 6.14e-01 98.3% 79.7%
5082509 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.77 64.0 4.93e-01 91.7% 60.0%
5035319 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 64.0 6.43e-01 100.0% 91.7%
3839762 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.72 59.0 5.31e-01 91.7% 68.2%
3676043 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.72 64.0 4.09e-01 100.0% 21.1%
3586032 605.1.1.237 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Patched 0.67 56.0 4.84e-01 100.0% 76.2%
3189035 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.61 50.0 4.78e-01 100.0% 80.0%