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CAKLQF020000006.1__CAH1080374.1__SAMEA5780031_01581__00220
Bact-VirCAKLQF020000006.1__CAH1080374.1__SAMEA5780031_01581__00220
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-91
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01479.31 best | S4 | 45.4 | 7.60e-12 | 58.8% | 97.9% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dm9A00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.97 | 94.0 | 8.41e-01 | 100.0% | 76.9% |
| 3dh3B01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.88 | 61.0 | 6.93e-01 | 97.5% | 95.0% |
| 1vioA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.87 | 61.0 | 7.10e-01 | 96.2% | 100.0% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.85 | 62.0 | 6.79e-01 | 81.2% | 92.4% |
| 2k6pA00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.82 | 75.0 | 7.39e-01 | 98.8% | 95.2% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.77 | 66.0 | 6.57e-01 | 100.0% | 88.9% |
| 3hp7A01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.73 | 54.0 | 5.95e-01 | 100.0% | 95.4% |
| 5mmjd02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.70 | 65.0 | 6.07e-01 | 100.0% | 82.5% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.68 | 37.0 | 4.69e-01 | 100.0% | 91.3% |
| 1vs5D02 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.66 | 58.0 | 5.53e-01 | 96.2% | 87.2% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 36.0 | 4.34e-01 | 91.3% | 91.7% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.63e-01 | 92.5% | 58.3% |
| 2ozoA04 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 41.0 | 3.96e-01 | 82.5% | 97.8% |
| 2uzxB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.39e-01 | 77.5% | 65.3% |
| 7wrgA02 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 44.0 | 3.77e-01 | 93.8% | 68.9% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 37.0 | 2.86e-01 | 80.0% | 77.5% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6217 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.97 | 94.0 | 8.41e-01 | 100.0% | 76.9% |
| 3989121 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.94 | 87.0 | 8.38e-01 | 98.8% | 88.6% |
| 4589076 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.93 | 66.0 | 6.89e-01 | 96.2% | 78.7% |
| 5023885 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.90 | 68.0 | 7.49e-01 | 81.2% | 95.4% |
| 3839445 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.89 | 59.0 | 7.06e-01 | 96.2% | 100.0% |
| 3587422 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.88 | 59.0 | 7.02e-01 | 72.5% | 100.0% |
| 3281433 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 72.0 | 7.06e-01 | 87.5% | 82.4% |
| 3945814 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 62.0 | 6.85e-01 | 96.2% | 90.8% |
| 3683149 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.87 | 59.0 | 4.28e-01 | 70.0% | 52.3% |
| 4449295 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.86 | 65.0 | 7.15e-01 | 91.3% | 96.9% |
| 3274634 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.86 | 58.0 | 4.61e-01 | 70.0% | 56.7% |
| 4069286 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.86 | 61.0 | 6.50e-01 | 76.2% | 84.3% |
| 3237856 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.85 | 58.0 | 4.33e-01 | 70.0% | 47.8% |
| 3487271 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.85 | 58.0 | 4.34e-01 | 70.0% | 47.2% |
| 3345695 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.85 | 57.0 | 4.78e-01 | 70.0% | 44.0% |
| 4025438 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.85 | 62.0 | 6.85e-01 | 96.2% | 93.8% |
| 3838526 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 62.0 | 6.57e-01 | 77.5% | 87.1% |
| 4173735 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.84 | 61.0 | 6.28e-01 | 75.0% | 85.3% |
| 4947259 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 57.0 | 4.37e-01 | 70.0% | 52.1% |
| 4025730 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.83 | 59.0 | 6.71e-01 | 81.2% | 98.3% |
| 135256 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 75.0 | 7.39e-01 | 98.8% | 95.2% |
| 4240121 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.82 | 66.0 | 4.81e-01 | 85.0% | 50.0% |
| 4350669 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.82 | 65.0 | 4.81e-01 | 83.7% | 49.5% |
| 4544433 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.81 | 65.0 | 4.68e-01 | 85.0% | 47.0% |
| 4556019 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.81 | 65.0 | 4.63e-01 | 85.0% | 48.6% |
| 4105602 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.81 | 59.0 | 5.99e-01 | 77.5% | 82.5% |
| 4118995 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.80 | 64.0 | 4.70e-01 | 85.0% | 51.2% |
| 3308037 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.80 | 65.0 | 4.68e-01 | 86.3% | 56.3% |
| 4928594 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.80 | 68.0 | 5.24e-01 | 100.0% | 43.6% |
| 4348982 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.80 | 61.0 | 6.40e-01 | 80.0% | 90.4% |
| 4495690 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.80 | 65.0 | 4.95e-01 | 86.3% | 61.5% |
| 4347860 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.80 | 64.0 | 4.64e-01 | 85.0% | 49.3% |
| 4655808 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.80 | 60.0 | 5.90e-01 | 80.0% | 75.0% |
| 3589764 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.80 | 52.0 | 6.14e-01 | 70.0% | 96.4% |
| 4091239 | 221.1.2.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4,S4 | 0.80 | 64.0 | 4.69e-01 | 86.3% | 48.8% |
| 4114172 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.79 | 59.0 | 5.92e-01 | 77.5% | 83.7% |
| 4500894 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.79 | 59.0 | 6.02e-01 | 78.8% | 84.8% |
| 4988890 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 68.0 | 6.38e-01 | 100.0% | 76.8% |
| 4067726 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.79 | 59.0 | 5.83e-01 | 78.8% | 74.1% |
| 4424496 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.79 | 60.0 | 6.20e-01 | 80.0% | 85.3% |
| 4311996 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.79 | 59.0 | 6.15e-01 | 80.0% | 85.1% |
| 4033206 | 221.1.2.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 | 0.79 | 57.0 | 6.08e-01 | 76.2% | 90.0% |
| 4212369 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.78 | 59.0 | 5.92e-01 | 78.8% | 83.7% |
| 4563326 | 221.1.2.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4, SYY_C-terminal | 0.78 | 58.0 | 5.56e-01 | 77.5% | 73.3% |
| 3739932 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 59.0 | 5.29e-01 | 80.0% | 58.2% |
| 4650909 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.78 | 60.0 | 6.01e-01 | 80.0% | 86.3% |
| 4681372 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.78 | 58.0 | 5.86e-01 | 78.8% | 82.5% |
| 4474817 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.78 | 58.0 | 5.72e-01 | 78.8% | 80.0% |
| 4541707 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.78 | 57.0 | 5.29e-01 | 77.5% | 68.0% |
| 4039647 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.77 | 57.0 | 5.29e-01 | 77.5% | 67.0% |
| 4649306 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.77 | 59.0 | 5.97e-01 | 81.2% | 81.2% |
| 4275739 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.77 | 54.0 | 5.79e-01 | 88.7% | 84.3% |
| 3207538 | 221.1.2.9 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › TyrRSs_C | 0.77 | 58.0 | 5.19e-01 | 80.0% | 76.4% |
| 4339810 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.77 | 57.0 | 5.75e-01 | 78.8% | 83.7% |
| 4097247 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 57.0 | 5.74e-01 | 78.8% | 78.8% |
| 4179975 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 57.0 | 5.82e-01 | 80.0% | 88.5% |
| 4206871 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.76 | 56.0 | 5.32e-01 | 78.8% | 73.7% |
| 4171800 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.75 | 59.0 | 5.97e-01 | 95.0% | 83.7% |
| 4042822 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.75 | 55.0 | 5.66e-01 | 90.0% | 81.3% |
| 1279060 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.75 | 53.0 | 5.92e-01 | 100.0% | 95.2% |
| 4646539 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.74 | 55.0 | 5.38e-01 | 80.0% | 71.9% |
| 3389276 | 221.1.2.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal | 0.73 | 54.0 | 5.18e-01 | 78.8% | 75.5% |
| 4029060 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.72 | 68.0 | 4.97e-01 | 100.0% | 54.2% |
| 4610806 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.71 | 67.0 | 5.07e-01 | 100.0% | 47.6% |
| 4932746 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.70 | 62.0 | 4.84e-01 | 95.0% | 58.1% |
| 3623941 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.57 | 33.0 | 4.05e-01 | 100.0% | 100.0% |
| 3953711 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 41.0 | 3.39e-01 | 90.0% | 65.5% |
| 3959863 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 41.0 | 3.40e-01 | 90.0% | 65.5% |