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CAKLQF020000007.1__CAH1081667.1__SAMEA5780031_01620__00027
Bact-VirCAKLQF020000007.1__CAH1081667.1__SAMEA5780031_01620__00027
Identity
- Kingdom:
- phage
Quality
96.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-84
Domain cluster:
rep: CAKLQF020000030.1__CAH1093937.1__SAMEA5780031_03793__00037__D93-168
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00849.28 best | PseudoU_synth_2 | 42.4 | 1.20e-10 | 86.4% | 48.0% |
D2
high
residues 87-188
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00849.28 best | PseudoU_synth_2 | 44.7 | 2.30e-11 | 76.5% | 48.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1przA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.96 | 80.0 | 6.20e-01 | 100.0% | 45.1% |
| 2i82B00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.94 | 90.0 | 6.73e-01 | 100.0% | 47.2% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.88 | 84.0 | 6.23e-01 | 100.0% | 47.6% |
| 4j37A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.63 | 53.0 | 4.37e-01 | 92.2% | 94.2% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.56 | 41.0 | 3.90e-01 | 78.4% | 67.2% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.54 | 47.0 | 3.77e-01 | 100.0% | 57.9% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.84e-01 | 79.4% | 81.4% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.52 | 44.0 | 4.45e-01 | 94.1% | 92.4% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 42.0 | 3.29e-01 | 92.2% | 84.5% |
| 1tw0A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.72e-01 | 91.2% | 92.4% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 39.0 | 3.78e-01 | 80.4% | 92.9% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 43.0 | 3.87e-01 | 94.1% | 95.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4253790 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.97 | 94.0 | 6.85e-01 | 100.0% | 45.1% |
| 3973629 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.96 | 92.0 | 6.94e-01 | 100.0% | 48.8% |
| 3946057 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.95 | 92.0 | 6.80e-01 | 100.0% | 49.8% |
| 4574643 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.94 | 92.0 | 6.86e-01 | 100.0% | 48.4% |
| 3990024 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.94 | 87.0 | 6.46e-01 | 100.0% | 43.6% |
| 4025090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 90.0 | 6.16e-01 | 100.0% | 39.2% |
| 4032232 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 84.0 | 6.29e-01 | 100.0% | 43.8% |
| 3387405 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 83.0 | 6.51e-01 | 100.0% | 50.0% |
| 2067545 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 89.0 | 6.41e-01 | 100.0% | 45.3% |
| 3274762 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 89.0 | 6.34e-01 | 100.0% | 41.8% |
| 3479596 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 88.0 | 5.87e-01 | 100.0% | 44.4% |
| 3487746 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.92 | 88.0 | 6.30e-01 | 100.0% | 59.2% |
| 4262259 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 87.0 | 6.21e-01 | 100.0% | 40.0% |
| 3274100 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 87.0 | 6.38e-01 | 100.0% | 47.5% |
| 3385464 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 87.0 | 6.38e-01 | 100.0% | 51.1% |
| 3601865 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.90 | 87.0 | 6.31e-01 | 100.0% | 49.4% |
| 4162917 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.90 | 87.0 | 6.17e-01 | 100.0% | 43.1% |
| 3587449 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.90 | 85.0 | 6.24e-01 | 100.0% | 43.7% |
| 3840035 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 85.0 | 6.08e-01 | 100.0% | 41.6% |
| 3272090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 85.0 | 6.14e-01 | 100.0% | 46.1% |
| 3165450 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 79.0 | 5.93e-01 | 100.0% | 42.9% |
| 4010788 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 85.0 | 6.12e-01 | 100.0% | 44.1% |
| 4437930 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 85.0 | 6.17e-01 | 100.0% | 42.9% |
| 3647309 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 84.0 | 5.71e-01 | 100.0% | 45.8% |
| 3463187 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 83.0 | 5.67e-01 | 100.0% | 45.4% |
| 3494465 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.86 | 83.0 | 5.43e-01 | 100.0% | 51.0% |
| 4024420 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.86 | 82.0 | 5.97e-01 | 100.0% | 47.3% |
| 4093842 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.86 | 81.0 | 5.92e-01 | 100.0% | 43.3% |
| 3838529 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 82.0 | 5.98e-01 | 100.0% | 47.9% |
| 3274134 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 82.0 | 5.88e-01 | 100.0% | 46.2% |
| 3615345 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.84 | 81.0 | 5.46e-01 | 100.0% | 50.0% |
| 4132429 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.84 | 80.0 | 5.83e-01 | 100.0% | 47.8% |
| 3808723 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.83 | 80.0 | 5.58e-01 | 100.0% | 47.0% |
| 3970185 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.82 | 78.0 | 5.91e-01 | 100.0% | 48.4% |
| 3613554 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.81 | 77.0 | 4.84e-01 | 100.0% | 28.5% |
| 3613355 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.81 | 76.0 | 5.39e-01 | 100.0% | 46.4% |
| 3702765 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.80 | 76.0 | 5.26e-01 | 100.0% | 44.0% |
| 3600016 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.80 | 75.0 | 5.76e-01 | 98.0% | 95.1% |
| 4438073 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.61 | 40.0 | 4.35e-01 | 93.1% | 81.9% |
| 4955533 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 36.0 | 3.57e-01 | 79.4% | 60.0% |
| 4945381 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.58 | 41.0 | 4.42e-01 | 100.0% | 89.4% |
| 4679181 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 46.0 | 3.63e-01 | 100.0% | 57.3% |
| 3935896 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 44.0 | 4.04e-01 | 94.1% | 73.8% |
| 4943647 | 304.25.1.11 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 | 0.50 | 46.0 | 3.81e-01 | 100.0% | 98.3% |