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CAKLQF020000007.1__CAH1081682.1__SAMEA5780031_01635__00042

Bact-Vir

CAKLQF020000007.1__CAH1081682.1__SAMEA5780031_01635__00042

Identity

Kingdom:
phage

Quality

94.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-115_261-268
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02567.22 best PhzC-PhzF 113.5 1.80e-32 91.0% 38.1%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.94 91.0 9.01e-01 100.0% 96.1%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.92 88.0 8.26e-01 100.0% 88.2%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.91 88.0 8.49e-01 100.0% 95.5%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.91 88.0 8.41e-01 100.0% 94.9%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.89 86.0 8.38e-01 100.0% 94.7%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.83 79.0 7.05e-01 100.0% 85.7%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.83 78.0 6.95e-01 100.0% 86.1%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.82 78.0 6.73e-01 100.0% 85.8%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.81 76.0 6.80e-01 100.0% 88.4%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.80 70.0 6.76e-01 92.6% 82.4%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.80 70.0 6.52e-01 92.6% 81.6%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.80 74.0 6.14e-01 100.0% 93.2%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.78 74.0 7.33e-01 100.0% 96.9%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.77 68.0 6.10e-01 93.4% 87.8%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.76 67.0 6.13e-01 93.4% 87.3%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.76 65.0 6.35e-01 93.4% 83.3%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.75 66.0 6.50e-01 92.6% 87.6%
3mogA03 3.30.750.190 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.74 43.0 4.92e-01 78.7% 75.5%
3g7kB02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.69 62.0 5.35e-01 95.1% 89.0%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 39.0 3.76e-01 94.3% 54.0%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 41.0 4.16e-01 93.4% 74.2%
4pv6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 43.0 4.01e-01 78.7% 98.7%
3dfuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 40.0 3.93e-01 73.0% 100.0%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 37.0 2.91e-01 74.6% 57.2%
6mtzA01 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 41.0 4.32e-01 94.3% 94.4%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.51 35.0 3.27e-01 70.5% 75.9%
6lkvA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 34.0 3.32e-01 78.7% 60.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.84e-01 75.4% 64.3%
1euvA02 3.30.310.130 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related 0.51 38.0 4.03e-01 78.7% 95.2%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.89e-01 89.3% 99.3%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.86e-01 100.0% 89.9%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970156 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.97 87.0 8.98e-01 93.4% 97.4%
1107970 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.97 87.0 8.62e-01 93.4% 89.6%
3295967 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.96 87.0 7.88e-01 93.4% 94.2%
3426205 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.95 87.0 7.81e-01 93.4% 95.5%
3729698 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.93 84.0 7.72e-01 93.4% 86.7%
3695711 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.93 82.0 7.39e-01 91.0% 96.8%
4046575 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.93 81.0 8.37e-01 93.4% 95.7%
5045717 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 84.0 8.18e-01 93.4% 94.6%
4981693 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 83.0 8.29e-01 93.4% 96.8%
7496 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 83.0 8.15e-01 93.4% 92.2%
4137619 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 83.0 8.12e-01 93.4% 94.6%
5034698 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 83.0 8.13e-01 93.4% 93.8%
3784333 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.92 83.0 7.84e-01 93.4% 97.1%
3601196 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.92 83.0 7.44e-01 93.4% 95.6%
3973107 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.92 83.0 8.29e-01 93.4% 93.6%
169137 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.91 83.0 8.04e-01 93.4% 90.8%
4631930 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.91 83.0 8.07e-01 93.4% 91.5%
2048355 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.91 83.0 8.14e-01 93.4% 91.4%
3967702 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.90 81.0 8.10e-01 93.4% 92.8%
3732126 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.90 81.0 7.77e-01 93.4% 97.0%
4978875 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.89 80.0 7.87e-01 93.4% 94.6%
3953947 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.88 78.0 8.08e-01 93.4% 97.4%
3291383 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.86 76.0 7.60e-01 93.4% 94.4%
3386570 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.86 73.0 7.10e-01 93.4% 81.3%
4602979 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.84 74.0 6.68e-01 93.4% 70.9%
4417898 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.84 74.0 6.77e-01 93.4% 73.4%
5079606 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.84 75.0 6.67e-01 93.4% 70.1%
4369844 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.83 74.0 6.67e-01 93.4% 71.1%
3386607 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.83 72.0 7.48e-01 93.4% 96.5%
4127691 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.83 72.0 7.44e-01 93.4% 96.5%
4350703 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 70.0 7.34e-01 92.6% 98.2%
4042899 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 6.24e-01 93.4% 64.9%
4116186 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 6.17e-01 93.4% 64.2%
3587409 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 72.0 6.65e-01 93.4% 74.7%
4524276 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.82 78.0 5.47e-01 100.0% 93.4%
4048173 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 7.42e-01 93.4% 95.8%
4297075 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 7.04e-01 93.4% 87.4%
4174422 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 7.11e-01 93.4% 86.9%
3603282 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 6.65e-01 93.4% 76.1%
4521593 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 67.0 6.83e-01 93.4% 87.5%
4314980 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 73.0 6.73e-01 93.4% 76.0%
4160795 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.82 73.0 6.81e-01 93.4% 89.0%
1273610 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.82 73.0 6.78e-01 93.4% 87.8%
3631697 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.82 59.0 6.54e-01 83.6% 91.0%
4273113 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 73.0 6.38e-01 93.4% 67.1%
4575341 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 73.0 6.62e-01 93.4% 74.0%
4444380 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 72.0 6.54e-01 93.4% 72.9%
2453167 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.81 72.0 6.70e-01 93.4% 89.9%
4198603 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 72.0 6.50e-01 93.4% 71.7%
4597935 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.81 72.0 6.58e-01 93.4% 73.5%
2410306 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.81 72.0 6.25e-01 93.4% 80.2%
4408335 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 72.0 6.64e-01 93.4% 76.0%
4193310 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.81 72.0 6.56e-01 93.4% 74.7%
3293558 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.80 71.0 6.54e-01 93.4% 77.9%
4619476 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.80 71.0 6.36e-01 93.4% 69.1%
1115581 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.80 71.0 6.50e-01 93.4% 88.3%
4016963 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.80 71.0 5.97e-01 93.4% 77.9%
5023848 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.79 70.0 6.87e-01 93.4% 86.9%
3739561 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.79 70.0 6.19e-01 93.4% 79.3%
4078456 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.79 70.0 6.55e-01 93.4% 94.5%
3286190 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.78 60.0 6.60e-01 87.7% 98.0%
3953936 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.77 62.0 6.44e-01 88.5% 90.3%
4643882 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.77 66.0 6.38e-01 93.4% 82.2%
4157539 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.76 67.0 6.19e-01 93.4% 77.3%
4941271 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 43.0 4.07e-01 78.7% 100.0%
5053873 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 42.0 4.47e-01 95.1% 90.5%
5069298 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.55 44.0 3.83e-01 85.2% 77.8%
4217250 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.53 46.0 3.27e-01 93.4% 40.8%
4035949 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 42.0 4.18e-01 95.1% 87.1%
5051114 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 39.0 4.10e-01 94.3% 90.0%
4430067 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.51 43.0 3.17e-01 93.4% 42.1%
None 0.51 44.0 3.15e-01 93.4% 41.2%
4222853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 39.0 4.06e-01 89.3% 88.7%
4574830 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.50 41.0 4.13e-01 95.1% 88.3%
D2 high residues 121-256
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02567.22 best PhzC-PhzF 61.4 1.50e-16 100.0% 41.3%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.95 85.0 8.66e-01 100.0% 94.7%
1qy9A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.85 81.0 7.57e-01 100.0% 95.7%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.85 80.0 7.59e-01 100.0% 94.9%
3ednA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.83 79.0 7.32e-01 100.0% 95.7%
1xubA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.82 78.0 7.60e-01 100.0% 94.6%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.76 63.0 6.47e-01 100.0% 92.2%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.76 61.0 6.35e-01 87.5% 90.6%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.74 59.0 6.10e-01 87.5% 88.2%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.73 68.0 6.46e-01 100.0% 95.5%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.72 67.0 6.23e-01 100.0% 94.6%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.71 61.0 5.99e-01 94.1% 84.2%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 63.0 6.37e-01 100.0% 96.3%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 65.0 6.08e-01 100.0% 95.2%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.68 61.0 5.67e-01 94.9% 84.1%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.65 53.0 5.36e-01 86.8% 88.6%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 40.0 4.19e-01 99.3% 83.2%
5ifpA03 2.60.390.10 Mainly Beta › Sandwich › beta-galactosidase, domain 3 › Beta-galactosidase, domain 3 0.54 33.0 3.88e-01 87.5% 89.9%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.52 37.0 3.69e-01 72.8% 70.8%
2iexA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 45.0 4.08e-01 96.3% 95.3%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.51 45.0 4.25e-01 95.6% 92.7%
3njdA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 42.0 3.40e-01 93.4% 70.7%
4pv6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 45.0 4.39e-01 99.3% 94.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4217929 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.97 89.0 8.69e-01 100.0% 88.3%
3970157 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.96 86.0 8.54e-01 100.0% 89.2%
3587565 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.96 86.0 8.54e-01 100.0% 89.3%
5039376 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.95 88.0 8.46e-01 100.0% 86.6%
4643882 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.94 85.0 8.54e-01 100.0% 93.3%
4048866 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.91 87.0 8.39e-01 100.0% 89.3%
3546666 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.90 87.0 8.05e-01 100.0% 89.0%
3831291 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.90 87.0 7.76e-01 100.0% 91.1%
3598334 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.89 85.0 7.39e-01 100.0% 89.2%
3895228 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.89 86.0 7.92e-01 100.0% 90.3%
3243571 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.88 85.0 7.39e-01 100.0% 89.5%
3928377 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.86 82.0 7.23e-01 100.0% 91.0%
5045718 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.85 81.0 7.44e-01 100.0% 91.1%
4978876 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.85 81.0 7.60e-01 100.0% 93.8%
3169250 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.85 81.0 7.42e-01 100.0% 89.3%
3980186 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.85 80.0 7.37e-01 100.0% 91.2%
5034699 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.85 81.0 7.66e-01 100.0% 94.2%
4963041 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.84 80.0 7.30e-01 100.0% 88.8%
3739561 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.84 79.0 7.30e-01 100.0% 91.1%
4056097 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.83 79.0 7.23e-01 100.0% 90.0%
4354982 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.83 78.0 7.44e-01 98.5% 90.2%
3973126 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.83 78.0 7.44e-01 98.5% 90.2%
3957593 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.82 79.0 7.72e-01 100.0% 94.5%
4965686 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.82 78.0 7.23e-01 100.0% 92.1%
3688395 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.82 78.0 7.26e-01 100.0% 85.5%
4350703 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 62.0 6.84e-01 85.3% 95.5%
5079606 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.82 72.0 6.68e-01 100.0% 76.2%
3967701 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.82 78.0 7.45e-01 100.0% 90.2%
4960060 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.81 77.0 7.21e-01 100.0% 95.0%
4097360 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.81 77.0 6.98e-01 100.0% 90.3%
3288805 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.81 75.0 7.27e-01 100.0% 89.3%
4623713 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.79 74.0 7.11e-01 100.0% 90.2%
4492832 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.78 70.0 6.66e-01 100.0% 83.2%
4157539 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.77 69.0 6.69e-01 100.0% 86.0%
4566218 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.77 66.0 6.90e-01 94.9% 96.8%
4120630 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.77 63.0 6.66e-01 92.6% 95.8%
3271043 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.77 72.0 6.35e-01 100.0% 78.4%
5023847 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.76 61.0 6.22e-01 92.6% 86.2%
4331745 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.76 64.0 6.31e-01 94.9% 83.4%
2808312 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.76 63.0 6.26e-01 97.8% 84.4%
1273564 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.75 63.0 6.00e-01 93.4% 76.3%
4116186 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.75 69.0 6.08e-01 100.0% 69.5%
4424188 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.75 61.0 6.28e-01 92.6% 88.5%
4665960 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.74 69.0 6.42e-01 100.0% 96.4%
4192273 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.73 68.0 6.35e-01 100.0% 95.2%
4165204 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.73 68.0 6.27e-01 100.0% 95.3%
4645759 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.73 67.0 5.92e-01 100.0% 82.1%
4288786 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.72 67.0 6.29e-01 100.0% 94.5%
4961968 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.72 67.0 6.02e-01 100.0% 86.7%
1117076 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.71 65.0 5.69e-01 98.5% 83.1%
1118504 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.71 62.0 5.89e-01 94.1% 84.5%
3284738 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.71 66.0 6.13e-01 100.0% 94.5%
2667421 286.1.1.5 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N 0.70 63.0 6.14e-01 100.0% 87.9%
2453168 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.70 64.0 5.75e-01 98.5% 84.6%
2138154 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.65 50.0 4.85e-01 82.4% 99.4%
4017277 323.1.1.28 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding_C 0.60 42.0 2.94e-01 71.3% 32.0%
3207613 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 38.0 3.61e-01 91.9% 55.2%
3603514 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.58 36.0 4.39e-01 76.5% 94.4%
3278244 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.56 42.0 3.80e-01 78.7% 68.1%
4149106 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.55 40.0 4.08e-01 99.3% 76.3%
4976813 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 42.0 4.08e-01 94.1% 73.3%
5010105 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.54 39.0 4.09e-01 99.3% 81.6%
4948107 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 41.0 4.38e-01 89.7% 94.2%
4992664 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.52 43.0 4.28e-01 89.7% 95.9%
3614611 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.50 45.0 4.19e-01 95.6% 90.3%
4016812 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.50 42.0 4.04e-01 91.2% 87.7%