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CAKLQF020000007.1__CAH1081738.1__SAMEA5780031_01692__00098

Bact-Vir

CAKLQF020000007.1__CAH1081738.1__SAMEA5780031_01692__00098

Identity

Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-190
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02618.22 best YceG 64.3 1.80e-17 97.7% 42.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968266 3536.1.1.0 a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains 0.86 47.0 5.31e-01 97.7% 68.6%
D2 medium residues 191-240
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uajA02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.69 43.0 3.78e-01 78.0% 43.8%
1a0aA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.64 49.0 4.61e-01 86.0% 79.4%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.62 48.0 3.91e-01 82.0% 64.4%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 42.0 4.14e-01 82.0% 69.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981837 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 42.0 2.54e-01 100.0% 10.4%
D3 medium residues 241-355
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02618.22 best YceG 154.0 8.20e-45 93.0% 38.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949177 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.99 97.0 8.60e-01 100.0% 76.7%
3959384 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.93 89.0 8.05e-01 98.3% 77.9%
4977389 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.93 89.0 8.01e-01 100.0% 78.7%
3386584 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.92 83.0 7.67e-01 93.9% 77.1%
4878095 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.91 75.0 8.15e-01 84.3% 100.0%
3987674 3374.1.1.1 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.91 86.0 7.74e-01 98.3% 78.7%
5083918 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 27.0 2.65e-01 85.2% 40.8%
3633537 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 27.0 2.53e-01 86.1% 37.2%
4985469 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 29.0 2.82e-01 87.8% 43.3%
4564040 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 28.0 2.74e-01 86.1% 41.5%
4976532 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 28.0 2.72e-01 86.1% 42.3%
5070218 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 28.0 2.85e-01 88.7% 48.3%
5024938 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 26.0 2.53e-01 86.1% 41.5%
5032057 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 28.0 2.80e-01 87.0% 47.5%
4936526 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 27.0 2.63e-01 87.0% 41.3%
4971920 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 27.0 2.66e-01 87.0% 44.8%
5008906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 28.0 2.66e-01 88.7% 42.1%