←Back to structures
CAKLQF020000007.1__CAH1081778.1__SAMEA5780031_01732__00138
Bact-VirCAKLQF020000007.1__CAH1081778.1__SAMEA5780031_01732__00138
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-153
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00308.25 best | Bac_DnaA | 35.8 | 1.30e-08 | 93.5% | 84.0% |
D2
high
residues 160-229
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.81 | 71.0 | 7.09e-01 | 100.0% | 93.1% |
| 6vvoC02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.79 | 66.0 | 6.89e-01 | 98.6% | 98.4% |
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 65.0 | 6.61e-01 | 98.6% | 100.0% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 63.0 | 5.88e-01 | 100.0% | 76.7% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.72 | 49.0 | 4.90e-01 | 71.4% | 76.7% |
| 2bnkA00 | 1.10.8.600 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like | 0.71 | 50.0 | 5.18e-01 | 75.7% | 81.2% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 48.0 | 4.55e-01 | 78.6% | 78.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.65 | 52.0 | 4.89e-01 | 92.9% | 93.2% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 43.0 | 3.95e-01 | 72.9% | 73.7% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 51.0 | 3.72e-01 | 91.4% | 63.1% |
| 4p32B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 43.0 | 3.07e-01 | 75.7% | 27.0% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.59 | 40.0 | 2.79e-01 | 71.4% | 37.2% |
| 3havB02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.58 | 40.0 | 2.98e-01 | 74.3% | 71.2% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.55 | 39.0 | 2.41e-01 | 74.3% | 56.2% |
| 3nnrA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 49.0 | 3.50e-01 | 98.6% | 57.4% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.55 | 40.0 | 3.75e-01 | 81.4% | 77.2% |
| 1mu5A02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 37.0 | 3.64e-01 | 74.3% | 71.8% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.53 | 37.0 | 3.43e-01 | 71.4% | 86.5% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.52 | 42.0 | 3.65e-01 | 88.6% | 61.5% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.52 | 38.0 | 3.48e-01 | 77.1% | 88.2% |
| 5w1uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.54e-01 | 92.9% | 35.1% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995735 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.85 | 66.0 | 7.09e-01 | 97.1% | 96.7% |
| 4089409 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 72.0 | 6.90e-01 | 100.0% | 83.7% |
| 3385989 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.80 | 71.0 | 7.20e-01 | 100.0% | 97.1% |
| 4410935 | 2004.1.1.35 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA | 0.80 | 70.0 | 4.67e-01 | 98.6% | 26.9% |
| 4040119 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 73.0 | 7.16e-01 | 100.0% | 94.7% |
| 5027338 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 65.0 | 6.69e-01 | 97.1% | 95.4% |
| 4544749 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 73.0 | 7.13e-01 | 100.0% | 93.3% |
| 4092407 | 148.1.3.198 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_DnaA | 0.79 | 72.0 | 4.74e-01 | 100.0% | 26.0% |
| 4246144 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 71.0 | 6.77e-01 | 100.0% | 85.0% |
| 4067861 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 71.0 | 6.67e-01 | 100.0% | 81.2% |
| 4216456 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 72.0 | 6.93e-01 | 100.0% | 88.7% |
| 4046331 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 71.0 | 6.98e-01 | 98.6% | 92.0% |
| 4034060 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.79 | 70.0 | 7.05e-01 | 100.0% | 97.1% |
| 4121495 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 72.0 | 7.07e-01 | 100.0% | 93.3% |
| 3602256 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.79 | 61.0 | 6.04e-01 | 100.0% | 78.7% |
| 4027556 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.78 | 68.0 | 6.82e-01 | 98.6% | 92.9% |
| 3821228 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.78 | 66.0 | 6.89e-01 | 100.0% | 100.0% |
| 3611993 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.78 | 67.0 | 6.71e-01 | 94.3% | 100.0% |
| 3720295 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.77 | 69.0 | 6.09e-01 | 97.1% | 100.0% |
| 4407077 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 69.0 | 6.64e-01 | 100.0% | 86.3% |
| 3838403 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.77 | 69.0 | 6.62e-01 | 100.0% | 86.3% |
| 4117160 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 70.0 | 6.71e-01 | 100.0% | 87.5% |
| 4204950 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 69.0 | 6.60e-01 | 100.0% | 86.3% |
| 4060907 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 69.0 | 6.62e-01 | 100.0% | 92.5% |
| 3278610 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 64.0 | 6.48e-01 | 100.0% | 91.4% |
| 4458447 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.77 | 67.0 | 6.76e-01 | 100.0% | 95.7% |
| 4520031 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 69.0 | 4.72e-01 | 100.0% | 29.2% |
| 4123695 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 60.0 | 6.09e-01 | 85.7% | 84.3% |
| 4197849 | 148.1.3.198 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_DnaA | 0.76 | 70.0 | 4.70e-01 | 100.0% | 28.6% |
| 4594380 | 148.1.3.49 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid | 0.76 | 68.0 | 6.54e-01 | 100.0% | 86.3% |
| 4464491 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 57.0 | 6.31e-01 | 81.4% | 100.0% |
| 3964153 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 69.0 | 6.75e-01 | 100.0% | 96.0% |
| 4562042 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 65.0 | 6.50e-01 | 100.0% | 94.3% |
| 4588724 | 148.1.3.49 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid | 0.76 | 68.0 | 6.70e-01 | 100.0% | 93.3% |
| 4576669 | 148.1.3.49 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid | 0.76 | 69.0 | 6.59e-01 | 100.0% | 88.7% |
| 3699805 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.76 | 66.0 | 6.67e-01 | 100.0% | 97.1% |
| 3240928 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 64.0 | 6.66e-01 | 97.1% | 100.0% |
| 4110274 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 67.0 | 6.45e-01 | 100.0% | 88.7% |
| 4374130 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 68.0 | 6.39e-01 | 100.0% | 82.4% |
| 3726598 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.75 | 65.0 | 6.59e-01 | 100.0% | 97.1% |
| 3482017 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.75 | 66.0 | 6.45e-01 | 97.1% | 96.0% |
| 52232 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 65.0 | 6.43e-01 | 100.0% | 96.0% |
| 4253183 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 58.0 | 5.97e-01 | 84.3% | 90.8% |
| 4192878 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.73 | 65.0 | 6.03e-01 | 100.0% | 85.6% |
| 4231508 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 57.0 | 5.88e-01 | 84.3% | 90.8% |
| 4028941 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.72 | 62.0 | 6.30e-01 | 100.0% | 97.1% |
| 3895660 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.71 | 48.0 | 4.71e-01 | 70.0% | 73.3% |
| 4286831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 52.0 | 5.73e-01 | 78.6% | 100.0% |
| 3249392 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 58.0 | 6.03e-01 | 95.7% | 98.5% |
| 3337773 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 62.0 | 5.92e-01 | 100.0% | 90.0% |
| 3895727 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 45.0 | 5.16e-01 | 88.6% | 96.0% |
| 4148010 | 632.1.1.24 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DAGK_prokar | 0.58 | 41.0 | 3.57e-01 | 80.0% | 76.8% |
| 3592312 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.57 | 49.0 | 3.19e-01 | 100.0% | 77.6% |
| 4953661 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.56 | 37.0 | 3.22e-01 | 87.1% | 42.7% |
| 4992064 | 2004.1.1.223 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › bpMoxR | 0.55 | 39.0 | 2.70e-01 | 80.0% | 23.1% |
| 5060404 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.54 | 37.0 | 3.72e-01 | 74.3% | 86.7% |
| 3383340 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.53 | 38.0 | 3.02e-01 | 75.7% | 67.6% |