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CAKLQF020000008.1__CAH1081934.1__SAMEA5780031_01829__00074

Bact-Vir

CAKLQF020000008.1__CAH1081934.1__SAMEA5780031_01829__00074

Identity

Kingdom:
phage

Quality

93.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-85_104-134
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.59 43.0 3.53e-01 76.8% 75.8%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 44.0 3.52e-01 80.5% 69.9%
1bvuA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 42.0 3.49e-01 76.8% 76.0%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.64e-01 76.8% 95.2%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 41.0 3.63e-01 75.6% 72.6%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 45.0 3.12e-01 89.0% 88.8%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 42.0 2.94e-01 82.9% 51.6%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 36.0 3.08e-01 72.0% 92.9%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.51 40.0 3.32e-01 86.6% 56.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970527 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.99 96.0 5.78e-01 100.0% 23.6%
4175473 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.59 44.0 2.94e-01 78.0% 62.5%
4978349 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 36.0 3.09e-01 76.8% 43.8%
3838701 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.53 44.0 2.86e-01 96.3% 57.1%
5030672 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 36.0 2.59e-01 72.0% 96.2%
5067478 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 35.0 3.17e-01 76.8% 50.9%
1942969 1136.1.1.1 a+b complex topology › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › ssRNA bacteriophage MS2 maturation protein › Phage_mat-A 0.51 40.0 2.63e-01 90.2% 89.5%
D2 medium residues 86-103_135-264
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04966.19 best OprB 105.2 7.40e-30 89.9% 33.5%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.77 63.0 4.78e-01 100.0% 41.5%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.67 63.0 4.46e-01 100.0% 43.8%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 31.0 3.66e-01 79.1% 65.7%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.62 57.0 4.48e-01 100.0% 55.8%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.60 56.0 3.99e-01 100.0% 44.3%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 46.0 3.64e-01 100.0% 43.5%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 52.0 3.98e-01 99.3% 66.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 34.0 3.54e-01 80.4% 65.2%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 34.0 3.44e-01 100.0% 59.5%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 37.0 3.98e-01 100.0% 80.6%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.54 49.0 3.66e-01 100.0% 66.8%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.54 50.0 3.54e-01 100.0% 49.4%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 37.0 3.84e-01 99.3% 74.6%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.52 38.0 3.27e-01 74.3% 70.4%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 48.0 3.23e-01 100.0% 50.5%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 47.0 3.16e-01 100.0% 41.2%
3dwoX00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.50 47.0 3.27e-01 100.0% 40.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970527 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.96 94.0 6.39e-01 100.0% 41.3%
3947513 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.90 87.0 6.09e-01 100.0% 43.9%
3971211 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.85 82.0 5.68e-01 100.0% 43.0%
4425267 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.74 70.0 4.93e-01 100.0% 39.7%
3177696 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.72 45.0 3.58e-01 100.0% 33.2%
3978947 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.68 63.0 4.59e-01 100.0% 50.7%
4458963 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.66 61.0 4.57e-01 100.0% 52.7%
4219386 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.65 61.0 4.49e-01 100.0% 50.5%
2321076 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.61 56.0 4.32e-01 100.0% 66.7%
3942551 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.60 56.0 3.96e-01 100.0% 44.8%
3985117 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.54 49.0 3.29e-01 100.0% 57.7%
4560979 331.3.1.19 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C 0.53 40.0 3.43e-01 93.2% 49.4%
3944979 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.52 49.0 4.22e-01 100.0% 77.3%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.51 41.0 3.89e-01 97.3% 71.8%
4039744 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 46.0 3.50e-01 94.6% 44.6%
5029448 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 31.0 3.06e-01 79.7% 55.0%
3967768 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.50 46.0 2.96e-01 100.0% 46.7%
5061892 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 47.0 3.93e-01 100.0% 66.1%
D3 medium residues 265-439
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04966.19 best OprB 125.7 4.30e-36 100.0% 41.3%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.81 58.0 4.73e-01 100.0% 42.5%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.75 64.0 4.99e-01 100.0% 45.3%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.73 70.0 5.12e-01 100.0% 51.3%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.72 48.0 4.91e-01 100.0% 68.8%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.71 61.0 4.80e-01 100.0% 46.0%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.69 54.0 4.76e-01 100.0% 57.4%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.69 55.0 5.23e-01 100.0% 70.7%
4k3bA06 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.68 64.0 4.93e-01 100.0% 64.0%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.67 64.0 4.23e-01 100.0% 33.1%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.66 49.0 4.24e-01 99.4% 52.4%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.66 61.0 4.54e-01 100.0% 41.9%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.65 61.0 4.50e-01 100.0% 55.3%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.64 60.0 5.24e-01 100.0% 68.5%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.64 61.0 4.03e-01 100.0% 40.9%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 59.0 4.39e-01 100.0% 44.6%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 36.0 3.79e-01 73.1% 67.1%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 44.0 4.72e-01 92.6% 89.7%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.58 55.0 4.49e-01 100.0% 67.9%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 4.20e-01 80.6% 87.8%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.57 53.0 4.36e-01 100.0% 64.0%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 3.68e-01 99.4% 66.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 37.0 3.78e-01 82.3% 74.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970527 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.97 95.0 6.80e-01 100.0% 43.6%
3947513 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.97 95.0 6.91e-01 100.0% 47.0%
4425267 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.87 68.0 4.99e-01 100.0% 34.1%
3971211 5084.5.1.6 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.82 78.0 5.74e-01 100.0% 42.5%
4472477 5084.5.1.35 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 0.82 58.0 4.67e-01 100.0% 40.3%
3404731 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.76 53.0 5.27e-01 99.4% 68.9%
3970343 5084.5.1.24 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Gcw_chp 0.73 54.0 5.05e-01 99.4% 62.3%
1806543 5084.5.1.15 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel 0.73 60.0 4.94e-01 100.0% 51.4%
3976425 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.71 53.0 4.96e-01 100.0% 63.8%
3839853 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.69 65.0 4.33e-01 100.0% 43.7%
4008544 5084.6.1.1 beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.69 55.0 5.00e-01 100.0% 63.8%
3941948 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.67 59.0 4.77e-01 100.0% 52.3%
3944481 5084.1.1.38 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Toluene_X 0.66 54.0 5.87e-01 85.1% 100.0%
3387633 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.66 62.0 4.97e-01 100.0% 60.5%
3838109 5084.9.1.1 beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.66 49.0 4.44e-01 76.6% 71.7%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.65 58.0 5.21e-01 100.0% 69.6%
898 5084.6.1.1 beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.64 60.0 5.24e-01 100.0% 68.5%
3352673 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.64 60.0 4.78e-01 100.0% 58.2%
3824904 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.64 60.0 4.77e-01 100.0% 59.1%
3379458 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.63 59.0 4.71e-01 100.0% 59.1%
3164124 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.61 40.0 4.69e-01 81.1% 95.8%
3963279 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.59 55.0 4.50e-01 100.0% 61.7%
4683047 5084.1.1.29 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.59 41.0 4.25e-01 81.7% 74.5%
3165475 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.58 39.0 4.17e-01 76.6% 75.3%
3944680 5084.5.3.7 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › BCSC_C 0.58 54.0 4.16e-01 100.0% 51.5%
1065880 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 45.0 4.20e-01 80.6% 87.8%
3968185 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.57 45.0 3.29e-01 81.7% 63.6%
4039744 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 53.0 4.23e-01 99.4% 61.5%
4512746 5084.1.1.9 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.56 40.0 4.20e-01 82.3% 79.7%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.56 40.0 4.12e-01 91.4% 75.9%
3385673 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.55 36.0 3.84e-01 82.3% 73.1%
4279299 5084.1.1.2 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.54 39.0 3.88e-01 73.7% 75.0%
3838496 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.54 42.0 3.89e-01 82.3% 74.6%
3839687 5084.4.1.1 beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.53 48.0 4.19e-01 98.3% 66.3%
3976052 5084.4.1.1 beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.53 46.0 4.05e-01 98.3% 63.3%
3787225 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 44.0 4.27e-01 92.0% 79.5%
4042627 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.53 38.0 3.96e-01 81.7% 78.0%
4172098 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.51 40.0 3.85e-01 81.1% 75.0%