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CAKLQF020000009.1__CAH1083277.1__SAMEA5780031_01913__00008
Bact-VirCAKLQF020000009.1__CAH1083277.1__SAMEA5780031_01913__00008
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-201
Domain cluster:
rep: MT310852.1__QJD49729.1__SEA_CLUBPENGUIN_5__00005__D26-178
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 38.5 | 1.70e-09 | 85.4% | 92.8% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.83 | 71.0 | 7.50e-01 | 96.9% | 98.2% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 68.0 | 7.32e-01 | 95.3% | 98.8% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.81 | 73.0 | 7.52e-01 | 95.8% | 98.4% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 72.0 | 7.42e-01 | 95.8% | 97.3% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 71.0 | 6.97e-01 | 99.0% | 97.6% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 70.0 | 7.09e-01 | 97.4% | 99.5% |
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 65.0 | 6.75e-01 | 96.9% | 96.7% |
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.63 | 52.0 | 5.12e-01 | 87.5% | 100.0% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 25.0 | 3.45e-01 | 79.7% | 74.3% |
| 1x7vA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 25.0 | 3.50e-01 | 80.7% | 78.6% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 25.0 | 3.35e-01 | 80.7% | 74.3% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.56 | 21.0 | 3.16e-01 | 79.7% | 78.0% |
| 1xxaC00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 19.0 | 2.88e-01 | 72.9% | 71.2% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 19.0 | 2.85e-01 | 84.9% | 77.0% |
| 3i4pA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 22.0 | 3.16e-01 | 79.7% | 86.9% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 26.0 | 3.28e-01 | 82.3% | 85.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028063 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.86 | 75.0 | 7.89e-01 | 97.4% | 99.4% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 68.0 | 7.36e-01 | 95.8% | 97.6% |
| 3290691 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 79.0 | 7.60e-01 | 99.5% | 88.3% |
| 4046553 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 70.0 | 7.43e-01 | 95.8% | 97.6% |
| None | — | 0.83 | 69.0 | 7.37e-01 | 95.8% | 98.2% | |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 73.0 | 7.65e-01 | 95.8% | 100.0% |
| 3690734 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 69.0 | 7.38e-01 | 96.4% | 100.0% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 75.0 | 7.70e-01 | 95.8% | 98.9% |
| 4937535 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 72.0 | 7.60e-01 | 95.3% | 100.0% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 73.0 | 7.55e-01 | 95.8% | 98.9% |
| 4948034 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 75.0 | 7.68e-01 | 97.4% | 98.9% |
| 4932664 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 74.0 | 7.60e-01 | 96.4% | 98.4% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 73.0 | 7.53e-01 | 95.8% | 98.9% |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 73.0 | 7.58e-01 | 95.3% | 99.4% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 73.0 | 7.52e-01 | 96.9% | 98.9% |
| 4972305 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 72.0 | 7.51e-01 | 96.4% | 98.9% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 74.0 | 7.53e-01 | 96.9% | 97.8% |
| None | — | 0.81 | 74.0 | 7.61e-01 | 96.9% | 99.5% | |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 74.0 | 7.53e-01 | 96.9% | 98.4% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 74.0 | 7.56e-01 | 96.9% | 98.9% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 71.0 | 7.36e-01 | 92.7% | 97.8% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 73.0 | 7.54e-01 | 96.9% | 99.5% |
| 3730050 | 264.1.1.5 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest | 0.80 | 76.0 | 7.12e-01 | 99.5% | 97.4% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 72.0 | 7.46e-01 | 95.8% | 100.0% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 70.0 | 7.16e-01 | 93.8% | 94.6% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 72.0 | 7.42e-01 | 96.9% | 98.4% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 70.0 | 7.26e-01 | 94.8% | 97.8% |
| None | — | 0.79 | 68.0 | 7.19e-01 | 89.1% | 99.4% | |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 72.0 | 7.40e-01 | 95.8% | 99.5% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 71.0 | 7.31e-01 | 97.4% | 98.9% |
| 3338135 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 68.0 | 7.03e-01 | 96.9% | 97.2% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 70.0 | 7.22e-01 | 95.3% | 99.4% |
| 4026533 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 74.0 | 7.30e-01 | 99.0% | 99.0% |
| 4991838 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 53.0 | 6.30e-01 | 84.9% | 98.5% |
| 1736491 | 264.1.1.2 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A | 0.77 | 58.0 | 6.58e-01 | 91.1% | 100.0% |
| 3990131 | 264.1.1.5 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest | 0.76 | 71.0 | 6.89e-01 | 98.4% | 100.0% |
| 4020982 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.76 | 71.0 | 6.32e-01 | 99.5% | 83.7% |
| 3731250 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.76 | 70.0 | 6.97e-01 | 97.4% | 98.5% |
| 3698263 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.76 | 71.0 | 6.07e-01 | 99.5% | 85.1% |
| 276 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.76 | 65.0 | 6.75e-01 | 96.9% | 96.7% |
| 3251551 | 264.1.1.15 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 | 0.75 | 68.0 | 6.54e-01 | 95.3% | 94.9% |
| 4019568 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.74 | 67.0 | 6.74e-01 | 95.3% | 98.9% |
| 3744563 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.73 | 64.0 | 6.66e-01 | 98.4% | 100.0% |
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.72 | 67.0 | 6.61e-01 | 97.4% | 100.0% |
| 3788314 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.71 | 65.0 | 6.56e-01 | 98.4% | 100.0% |
| 4423124 | 264.1.1.15 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › DUF1045 | 0.71 | 64.0 | 6.00e-01 | 96.4% | 100.0% |
| 3553577 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.71 | 60.0 | 6.27e-01 | 96.9% | 98.3% |
| 4079239 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.70 | 64.0 | 6.45e-01 | 98.4% | 100.0% |
| 4142179 | 306.2.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C | 0.60 | 20.0 | 3.00e-01 | 72.9% | 68.0% |
| 3497100 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.59 | 52.0 | 4.77e-01 | 93.8% | 98.8% |
| 4052194 | 306.2.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C | 0.59 | 20.0 | 2.81e-01 | 74.0% | 60.0% |
| 3182852 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.55 | 46.0 | 4.57e-01 | 88.5% | 100.0% |
| 3176561 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.54 | 44.0 | 4.43e-01 | 85.9% | 99.5% |