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CAKLQF020000009.1__CAH1083450.1__SAMEA5780031_02000__00095

Bact-Vir

CAKLQF020000009.1__CAH1083450.1__SAMEA5780031_02000__00095

Identity

Kingdom:
phage

Quality

79.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 246-292
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23552.3 best ParB_C 87.6 4.00e-25 100.0% 90.0%
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 61.0 5.06e-01 97.9% 57.3%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 59.0 5.15e-01 100.0% 66.7%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.71 57.0 4.42e-01 95.7% 38.9%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.68 55.0 4.78e-01 100.0% 58.7%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 50.0 4.35e-01 100.0% 49.4%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.68 56.0 5.12e-01 100.0% 76.5%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.66 52.0 4.77e-01 100.0% 64.2%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.66 50.0 4.09e-01 100.0% 41.7%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 48.0 3.99e-01 83.0% 52.9%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 48.0 3.99e-01 97.9% 43.8%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.65e-01 95.7% 62.9%
4oj3B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 49.0 4.06e-01 97.9% 45.3%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.63 51.0 4.10e-01 95.7% 71.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 46.0 3.80e-01 83.0% 47.4%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 54.0 3.29e-01 100.0% 15.1%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.40e-01 100.0% 66.3%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.62 49.0 3.96e-01 95.7% 49.0%
2lxfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 46.0 3.62e-01 97.9% 34.7%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 51.0 3.50e-01 100.0% 71.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 41.0 3.54e-01 70.2% 74.7%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 48.0 4.07e-01 97.9% 50.6%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 50.0 4.47e-01 100.0% 64.9%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.60 43.0 3.32e-01 78.7% 82.2%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 43.0 3.22e-01 100.0% 28.6%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 47.0 3.62e-01 89.4% 37.2%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.60 46.0 2.95e-01 100.0% 15.0%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.59 47.0 3.98e-01 89.4% 54.9%
4iw7A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 46.0 3.66e-01 95.7% 42.6%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.59 47.0 3.68e-01 100.0% 59.3%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 43.0 3.56e-01 95.7% 40.7%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 42.0 3.24e-01 100.0% 29.9%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 2.67e-01 78.7% 69.5%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.59 47.0 3.93e-01 97.9% 68.1%
2qa4I01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.59 40.0 3.83e-01 72.3% 63.6%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.58 44.0 3.17e-01 100.0% 25.6%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 4.10e-01 91.5% 65.2%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.58 45.0 4.11e-01 97.9% 62.0%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 47.0 4.14e-01 97.9% 60.8%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.58 42.0 3.79e-01 100.0% 52.6%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 48.0 3.55e-01 100.0% 34.3%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.58 39.0 3.61e-01 72.3% 80.0%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 42.0 3.05e-01 80.9% 82.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 43.0 3.60e-01 89.4% 52.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 47.0 3.32e-01 95.7% 27.5%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 47.0 4.19e-01 100.0% 65.3%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.86e-01 97.9% 54.1%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 45.0 3.49e-01 100.0% 55.1%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.56 40.0 3.35e-01 93.6% 43.9%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 43.0 4.01e-01 97.9% 69.6%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.55 44.0 4.25e-01 97.9% 79.3%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.55 46.0 3.51e-01 100.0% 60.0%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 39.0 3.66e-01 100.0% 57.4%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.46e-01 100.0% 44.0%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 41.0 3.36e-01 100.0% 41.4%
3ltoA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.53 42.0 3.23e-01 100.0% 35.8%
3v3kD00 1.20.1260.90 Mainly Alpha › Up-down Bundle › Ferritin › 0.53 44.0 3.08e-01 100.0% 57.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.53 36.0 2.90e-01 74.5% 32.4%
7ewfA01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 36.0 2.32e-01 72.3% 27.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.02e-01 100.0% 37.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 40.0 3.57e-01 100.0% 61.9%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 38.0 3.22e-01 89.4% 45.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 2.97e-01 80.9% 58.3%
3duzA03 6.10.250.3010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 34.0 3.07e-01 74.5% 49.4%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.04e-01 76.6% 59.3%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 38.0 3.08e-01 97.9% 37.6%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 38.0 3.27e-01 97.9% 52.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.19e-01 100.0% 41.3%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4314239 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.98 93.0 9.06e-01 100.0% 94.0%
4400545 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.94 87.0 8.31e-01 100.0% 88.7%
3989790 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.93 84.0 8.24e-01 97.9% 92.0%
4236584 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.90 82.0 8.04e-01 100.0% 94.0%
3906342 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.77 68.0 5.15e-01 100.0% 47.3%
3841538 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.77 67.0 5.27e-01 100.0% 51.0%
3417192 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.76 61.0 6.07e-01 100.0% 88.0%
3772559 304.159.1.3 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › KH_Vigilin 0.75 62.0 4.51e-01 100.0% 33.8%
5029892 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.75 62.0 5.14e-01 100.0% 51.8%
3873803 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.74 60.0 4.93e-01 100.0% 48.9%
3211790 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.73 60.0 5.23e-01 100.0% 60.0%
3473575 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.72 60.0 5.11e-01 100.0% 56.2%
3853273 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.71 54.0 5.38e-01 95.7% 82.0%
3821553 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.70 59.0 5.81e-01 100.0% 90.0%
4115819 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.69 52.0 3.62e-01 100.0% 24.1%
4603561 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.69 55.0 4.80e-01 97.9% 60.0%
3847949 327.11.2.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.68 55.0 4.36e-01 100.0% 42.9%
4483441 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.67 55.0 4.93e-01 100.0% 65.3%
5035888 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.67 54.0 4.57e-01 100.0% 52.9%
4929212 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.67 49.0 3.78e-01 100.0% 34.5%
4011869 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.67 55.0 3.83e-01 97.9% 26.9%
3411905 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.67 54.0 5.02e-01 97.9% 70.8%
3204288 327.11.2.68 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Mug60-KHD4, PF29984, PF29998 0.66 55.0 3.24e-01 97.9% 12.1%
3864360 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.66 54.0 4.69e-01 97.9% 68.8%
3603234 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.66 51.0 4.10e-01 100.0% 40.0%
3210600 327.11.2.41 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26657 0.66 54.0 4.83e-01 100.0% 62.9%
3460962 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.66 55.0 4.60e-01 100.0% 73.3%
3603204 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.66 51.0 4.77e-01 97.9% 67.7%
3218069 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 54.0 4.98e-01 97.9% 73.8%
4976695 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.65 50.0 4.15e-01 89.4% 45.6%
4965914 304.54.1.8 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › FLAD1_M 0.65 54.0 4.65e-01 97.9% 61.3%
3396525 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.65 53.0 4.70e-01 97.9% 66.7%
3915000 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.65 53.0 4.79e-01 97.9% 68.6%
3387953 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.65 52.0 4.72e-01 97.9% 71.4%
4997133 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.65 47.0 3.93e-01 100.0% 41.1%
4339550 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.65 49.0 4.16e-01 97.9% 46.3%
5000362 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.65 48.0 3.96e-01 97.9% 42.1%
3634690 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.65 51.0 4.36e-01 100.0% 51.8%
3262118 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 53.0 5.00e-01 100.0% 83.3%
3519959 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 52.0 4.80e-01 95.7% 73.8%
3814341 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.64 44.0 4.24e-01 100.0% 63.6%
3532818 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.64 52.0 4.53e-01 97.9% 58.7%
3634662 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.64 51.0 4.31e-01 97.9% 56.7%
2522049 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.63 52.0 4.04e-01 97.9% 42.1%
4297401 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.63 50.0 4.44e-01 97.9% 61.3%
3214986 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 51.0 4.41e-01 100.0% 56.2%
4020561 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.63 46.0 3.79e-01 97.9% 40.0%
4582873 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 52.0 4.70e-01 100.0% 70.0%
3532258 327.11.2.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.63 50.0 4.17e-01 100.0% 48.4%
3307802 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.62 46.0 3.92e-01 97.9% 45.5%
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.62 49.0 3.94e-01 100.0% 40.9%
3409077 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.62 50.0 4.51e-01 97.9% 68.6%
3195155 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 50.0 4.51e-01 97.9% 75.7%
3388102 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 47.0 4.36e-01 89.4% 66.2%
4017316 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.61 49.0 3.47e-01 97.9% 26.3%
3725624 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.61 49.0 3.50e-01 97.9% 30.0%
3233305 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.61 51.0 4.51e-01 100.0% 64.0%
3691787 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 49.0 3.62e-01 100.0% 31.3%
3706630 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 51.0 4.07e-01 97.9% 47.0%
4987876 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.60 46.0 4.05e-01 100.0% 52.9%
3698115 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.60 48.0 3.40e-01 97.9% 27.1%
4942480 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.60 45.0 3.72e-01 100.0% 42.0%
3900717 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.60 43.0 3.82e-01 100.0% 50.6%
3524888 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.59 48.0 4.29e-01 97.9% 62.9%
3056435 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 46.0 3.79e-01 100.0% 42.7%
4937616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.72e-01 72.3% 55.0%
4992139 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.57 44.0 3.49e-01 97.9% 38.3%
4990780 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 46.0 3.61e-01 100.0% 56.5%
144952 304.5.1.10 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CBD_PlyG 0.57 44.0 3.86e-01 97.9% 54.1%
5028313 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 42.0 3.73e-01 100.0% 52.5%
3948373 304.8.1.69 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › YejG 0.55 45.0 3.58e-01 100.0% 43.1%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.55 41.0 2.73e-01 83.0% 82.0%
4669519 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 39.0 3.03e-01 89.4% 32.6%
3469940 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 39.0 2.55e-01 83.0% 69.4%
3740503 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 41.0 3.86e-01 97.9% 70.8%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.53 43.0 3.19e-01 95.7% 72.6%
3405342 304.7.1.29 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF25904 0.53 41.0 3.77e-01 95.7% 67.1%
3931636 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 41.0 3.88e-01 97.9% 73.3%
5012824 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.52 37.0 3.59e-01 97.9% 66.7%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 35.0 2.25e-01 78.7% 33.4%
3938116 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 39.0 2.63e-01 100.0% 69.0%
D2 medium residues 179-233
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17762.9 best HTH_ParB 54.0 2.20e-14 100.0% 53.9%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.98 87.0 6.68e-01 96.4% 46.8%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.90 82.0 6.68e-01 100.0% 56.7%
4ikmA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.78 55.0 4.60e-01 74.5% 45.2%
1cy5A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.75 53.0 4.48e-01 74.5% 45.7%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.73 53.0 4.51e-01 76.4% 49.4%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 51.0 4.66e-01 72.7% 60.0%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 52.0 4.36e-01 76.4% 45.2%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 50.0 4.15e-01 74.5% 98.0%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.71 52.0 5.35e-01 80.0% 98.1%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 50.0 5.10e-01 80.0% 83.6%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 52.0 4.52e-01 87.3% 71.6%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.65 49.0 4.29e-01 83.6% 75.6%
2mn4A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.65 45.0 3.86e-01 74.5% 44.7%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 47.0 3.46e-01 85.5% 92.2%
3rc3A01 1.10.1740.140 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.63 48.0 3.91e-01 81.8% 76.7%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.28e-01 74.5% 93.1%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 48.0 4.77e-01 89.1% 94.7%
2qhoD00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 43.0 4.46e-01 85.5% 91.8%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 40.0 4.25e-01 76.4% 100.0%
5yh1A01 3.90.1640.30 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › 0.58 49.0 3.16e-01 98.2% 53.5%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 40.0 2.70e-01 76.4% 48.4%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 41.0 4.34e-01 83.6% 97.9%
3rm5B02 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 46.0 3.13e-01 100.0% 72.8%
1c3cA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 40.0 3.47e-01 83.6% 72.5%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.53 40.0 3.53e-01 90.9% 95.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4224437 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.99 96.0 8.63e-01 100.0% 80.0%
4157292 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.99 90.0 8.72e-01 94.5% 86.7%
4082034 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.99 93.0 8.37e-01 98.2% 78.6%
2849885 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.98 92.0 8.93e-01 98.2% 91.7%
4253748 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.98 93.0 8.19e-01 100.0% 73.3%
2670716 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.98 88.0 8.95e-01 98.2% 96.3%
4033764 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.97 92.0 8.64e-01 100.0% 84.6%
4410233 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.97 83.0 8.72e-01 92.7% 98.0%
4148879 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.97 86.0 7.55e-01 96.4% 68.0%
3839508 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.97 92.0 8.09e-01 100.0% 73.3%
5073613 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.97 91.0 6.80e-01 100.0% 45.8%
4927768 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.96 88.0 8.82e-01 96.4% 98.2%
3515170 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.96 89.0 8.31e-01 98.2% 84.6%
3587505 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.96 89.0 8.30e-01 98.2% 84.6%
4962704 3317.1.1.8 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › DUF7119 0.94 86.0 8.04e-01 98.2% 83.1%
3941921 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.91 81.0 8.18e-01 96.4% 100.0%
4929276 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.91 81.0 8.18e-01 98.2% 98.2%
5032172 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.91 84.0 6.41e-01 100.0% 53.9%
3989793 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.91 82.0 8.22e-01 98.2% 98.2%
4039740 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.91 80.0 7.55e-01 96.4% 83.1%
4946474 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.90 83.0 7.79e-01 100.0% 92.3%
4958365 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.90 64.0 6.44e-01 74.5% 74.5%
4651138 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.89 66.0 6.43e-01 78.2% 73.3%
4958295 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.88 81.0 6.88e-01 100.0% 88.2%
4663216 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 74.0 5.80e-01 100.0% 47.3%
4075804 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.85 75.0 7.55e-01 100.0% 98.2%
3828743 3317.3.1.1 alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 › Raf1_N 0.83 75.0 5.58e-01 96.4% 43.2%
4950370 101.1.1.550 alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N 0.81 74.0 5.34e-01 100.0% 55.9%
5021927 101.1.1.550 alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N 0.81 73.0 5.54e-01 100.0% 46.4%
3892432 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.81 57.0 4.72e-01 74.5% 44.2%
2870904 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.78 55.0 4.68e-01 74.5% 46.7%
3502278 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.78 55.0 4.68e-01 74.5% 46.7%
3620818 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.78 55.0 4.58e-01 74.5% 44.2%
3800925 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.78 55.0 4.56e-01 74.5% 44.2%
3626215 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.77 54.0 4.60e-01 74.5% 46.7%
3908029 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.76 53.0 4.52e-01 74.5% 45.2%
3885137 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.76 53.0 4.55e-01 74.5% 46.7%
3226006 367.1.1.2 few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta 0.71 51.0 5.49e-01 81.8% 93.3%
4033260 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.69 50.0 4.79e-01 78.2% 70.8%
4023018 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 57.0 5.48e-01 98.2% 89.2%
3928496 143.1.1.0 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.68 54.0 5.26e-01 89.1% 88.3%
3713301 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 49.0 4.10e-01 78.2% 63.2%
4929134 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.66 55.0 5.74e-01 90.9% 100.0%
3444627 103.1.1.30 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GIP1_N 0.63 45.0 4.65e-01 80.0% 86.0%
3760775 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.63 51.0 4.53e-01 98.2% 83.3%
3492286 301.8.1.3 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.63 54.0 4.41e-01 96.4% 77.7%
181629 4953.1.1.3 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C 0.63 44.0 4.01e-01 78.2% 53.2%
3411687 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 46.0 4.84e-01 81.8% 100.0%
4026426 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 48.0 4.97e-01 94.5% 98.0%
5045836 4953.1.1.3 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C 0.61 44.0 4.24e-01 80.0% 64.6%
3896752 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.59 40.0 3.93e-01 70.9% 86.7%
3580639 103.1.1.12 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › E3_UbLigase_EDD 0.59 42.0 4.37e-01 85.5% 90.0%
3574492 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 47.0 4.52e-01 96.4% 100.0%