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CAKLQF020000009.1__CAH1083536.1__SAMEA5780031_02043__00138
Bact-VirCAKLQF020000009.1__CAH1083536.1__SAMEA5780031_02043__00138
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-92_108-188
Domain cluster:
rep: IMGVR_UViG_3300021295_000028-3300021295-Ga0214522_100005533__D47-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08331.16 best | QueG_DUF1730 | 71.5 | 5.80e-20 | 40.5% | 100.0% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.70 | 41.0 | 4.19e-01 | 100.0% | 58.6% |
| 1zavA01 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.66 | 38.0 | 4.14e-01 | 76.6% | 66.7% |
| 3h4oA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.66 | 49.0 | 4.79e-01 | 100.0% | 71.3% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 49.0 | 4.90e-01 | 100.0% | 75.3% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 54.0 | 5.31e-01 | 100.0% | 84.4% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 57.0 | 5.31e-01 | 100.0% | 79.1% |
| 4eo3A02 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 48.0 | 4.61e-01 | 100.0% | 68.9% |
| 2i7hA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 51.0 | 4.86e-01 | 100.0% | 73.3% |
| 2freA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 49.0 | 4.54e-01 | 100.0% | 65.3% |
| 3eo8A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.62 | 56.0 | 5.07e-01 | 100.0% | 79.5% |
| 6i0y501 | 3.30.70.1730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain | 0.61 | 36.0 | 3.90e-01 | 76.6% | 68.5% |
| 3i24B00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.61 | 34.0 | 3.63e-01 | 97.5% | 60.4% |
| 1bkjA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 49.0 | 4.32e-01 | 100.0% | 58.7% |
| 1l0wA03 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.59 | 41.0 | 4.37e-01 | 99.4% | 81.9% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 33.0 | 2.98e-01 | 93.0% | 41.0% |
| 4ah6A03 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.57 | 43.0 | 4.38e-01 | 99.4% | 81.6% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 3.76e-01 | 96.2% | 83.5% |
| 2p8tA02 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.55 | 31.0 | 3.65e-01 | 70.3% | 78.0% |
| 2iskA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 48.0 | 4.54e-01 | 100.0% | 77.7% |
| 4o7oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 43.0 | 3.81e-01 | 91.1% | 84.5% |
| 2cy9B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 33.0 | 3.52e-01 | 99.4% | 74.2% |
| 2p1wA01 | 3.30.2430.10 | Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase | 0.50 | 34.0 | 3.24e-01 | 77.2% | 58.6% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4355029 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.99 | 97.0 | 7.02e-01 | 100.0% | 52.5% |
| None | — | 0.98 | 95.0 | 7.27e-01 | 98.7% | 55.1% | |
| 4413563 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.96 | 94.0 | 7.19e-01 | 100.0% | 54.8% |
| 4098191 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.95 | 93.0 | 7.11e-01 | 100.0% | 54.5% |
| 4260672 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.95 | 89.0 | 6.81e-01 | 96.8% | 52.7% |
| 1889996 | 304.103.1.2 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › QueG_DUF1730 | 0.94 | 91.0 | 8.55e-01 | 100.0% | 93.0% |
| 4137176 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.92 | 89.0 | 6.87e-01 | 99.4% | 54.8% |
| 4950789 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.82 | 72.0 | 6.35e-01 | 100.0% | 66.1% |
| 4945881 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.82 | 68.0 | 5.44e-01 | 100.0% | 47.2% |
| 5073520 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.80 | 72.0 | 7.24e-01 | 98.7% | 92.5% |
| 4944995 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.80 | 69.0 | 5.80e-01 | 100.0% | 56.8% |
| 5045387 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.80 | 69.0 | 5.79e-01 | 100.0% | 56.8% |
| 5051274 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.80 | 67.0 | 5.44e-01 | 100.0% | 50.7% |
| 5051510 | 304.103.1.12 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_7 | 0.80 | 69.0 | 5.60e-01 | 100.0% | 52.6% |
| 2679038 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.79 | 66.0 | 5.49e-01 | 100.0% | 52.9% |
| 4998207 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.79 | 68.0 | 6.72e-01 | 96.8% | 85.5% |
| 4988403 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.79 | 65.0 | 5.87e-01 | 98.7% | 66.0% |
| 5004590 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.79 | 72.0 | 5.99e-01 | 99.4% | 59.2% |
| 4989326 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.78 | 64.0 | 6.55e-01 | 100.0% | 87.7% |
| 4972498 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.77 | 68.0 | 5.71e-01 | 96.8% | 58.0% |
| 5030680 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.77 | 74.0 | 5.94e-01 | 100.0% | 56.4% |
| 4999214 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.77 | 70.0 | 6.07e-01 | 96.2% | 66.2% |
| 4978496 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.76 | 73.0 | 6.14e-01 | 99.4% | 64.1% |
| 4975760 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.76 | 71.0 | 5.57e-01 | 98.1% | 52.8% |
| 4957548 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.76 | 72.0 | 6.21e-01 | 100.0% | 67.2% |
| 4953001 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.76 | 63.0 | 5.45e-01 | 100.0% | 58.7% |
| 4971145 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.76 | 69.0 | 5.97e-01 | 97.5% | 65.8% |
| 5049634 | 205.1.1.1 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 | 0.76 | 66.0 | 5.93e-01 | 99.4% | 68.1% |
| 4949268 | 205.1.1.1 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 | 0.76 | 71.0 | 5.88e-01 | 97.5% | 61.2% |
| 5008619 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.76 | 68.0 | 5.89e-01 | 98.7% | 64.3% |
| 5071339 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.76 | 68.0 | 5.37e-01 | 93.7% | 52.2% |
| 4935964 | 205.1.1.1 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 | 0.76 | 71.0 | 6.13e-01 | 98.1% | 67.4% |
| 4986398 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 68.0 | 6.03e-01 | 95.6% | 70.0% |
| 4979942 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.75 | 60.0 | 5.36e-01 | 90.5% | 61.9% |
| 5065344 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 71.0 | 6.10e-01 | 100.0% | 84.7% |
| 5066246 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 71.0 | 5.91e-01 | 98.7% | 62.4% |
| 5034660 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.75 | 69.0 | 5.48e-01 | 98.7% | 52.8% |
| 5076047 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 71.0 | 5.73e-01 | 99.4% | 57.3% |
| 4984122 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.74 | 71.0 | 5.83e-01 | 100.0% | 60.8% |
| 5075215 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.73 | 68.0 | 6.27e-01 | 96.8% | 79.5% |
| 5053713 | 304.103.1.12 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_7 | 0.73 | 70.0 | 5.26e-01 | 100.0% | 48.8% |
| 1447956 | 304.103.1.4 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Dehalogenase | 0.72 | 69.0 | 5.29e-01 | 100.0% | 53.4% |
| 3102591 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.72 | 69.0 | 5.09e-01 | 100.0% | 49.6% |
| 4960612 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.72 | 67.0 | 5.80e-01 | 99.4% | 66.4% |
| 4029820 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.67 | 63.0 | 5.42e-01 | 100.0% | 72.3% |
| 4463004 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.62 | 52.0 | 4.94e-01 | 100.0% | 76.6% |
| 169387 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.62 | 56.0 | 5.07e-01 | 100.0% | 79.5% |
| 5062814 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.61 | 55.0 | 5.27e-01 | 100.0% | 86.5% |
| 5075607 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.61 | 38.0 | 3.75e-01 | 100.0% | 57.6% |
| 4979915 | 304.103.1.10 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › DUF2148 | 0.60 | 55.0 | 5.07e-01 | 100.0% | 81.5% |
| 3190861 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.59 | 53.0 | 4.87e-01 | 100.0% | 74.8% |
| 5058929 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.56 | 51.0 | 4.59e-01 | 100.0% | 78.6% |
| 4977021 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.55 | 31.0 | 3.61e-01 | 84.8% | 77.2% |
| 4962881 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.55 | 48.0 | 4.35e-01 | 100.0% | 70.4% |
| 3915029 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.54 | 48.0 | 4.34e-01 | 100.0% | 69.5% |
| 4947297 | 329.1.1.0 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain | 0.54 | 32.0 | 3.65e-01 | 86.7% | 78.3% |
| 4034601 | 304.56.1.4 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › PrmA | 0.54 | 35.0 | 4.01e-01 | 93.7% | 88.7% |
| 4927353 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.54 | 48.0 | 4.22e-01 | 100.0% | 66.5% |
| 3879806 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.53 | 30.0 | 3.77e-01 | 100.0% | 94.4% |
| 3418844 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.50 | 46.0 | 3.79e-01 | 100.0% | 68.8% |
D2
high
residues 278-361
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8h6rA01 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.70 | 60.0 | 6.02e-01 | 91.7% | 94.1% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 42.0 | 4.97e-01 | 76.2% | 91.5% |
| 4wz9A04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.66 | 58.0 | 3.92e-01 | 100.0% | 41.7% |
| 4d49A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 60.0 | 4.26e-01 | 100.0% | 60.1% |
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 59.0 | 5.38e-01 | 98.8% | 97.3% |
| 3ltjA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 60.0 | 4.50e-01 | 100.0% | 61.3% |
| 4okmD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 51.0 | 3.49e-01 | 86.9% | 43.2% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 48.0 | 4.65e-01 | 92.9% | 70.8% |
| 1x9bA00 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.63 | 39.0 | 4.60e-01 | 78.6% | 98.1% |
| 3sl9B00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 56.0 | 4.51e-01 | 100.0% | 67.9% |
| 1f59A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 57.0 | 3.54e-01 | 100.0% | 25.5% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.62 | 41.0 | 4.60e-01 | 79.8% | 93.4% |
| 1e8yA03 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.61 | 54.0 | 4.21e-01 | 100.0% | 56.5% |
| 2lo6A00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 53.0 | 4.40e-01 | 100.0% | 93.5% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 51.0 | 5.04e-01 | 98.8% | 93.2% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 44.0 | 4.22e-01 | 83.3% | 68.8% |
| 1zbpA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 49.0 | 4.90e-01 | 100.0% | 90.6% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 42.0 | 3.53e-01 | 75.0% | 87.5% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.58 | 40.0 | 4.42e-01 | 81.0% | 100.0% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.58 | 42.0 | 3.86e-01 | 76.2% | 86.4% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.58 | 50.0 | 3.88e-01 | 97.6% | 94.3% |
| 1k3kA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.58 | 42.0 | 3.51e-01 | 77.4% | 56.8% |
| 6wm2P02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.57 | 48.0 | 4.44e-01 | 94.0% | 98.2% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.57 | 38.0 | 3.79e-01 | 76.2% | 63.7% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 43.0 | 3.87e-01 | 81.0% | 85.1% |
| 5c5sB00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.57 | 46.0 | 3.64e-01 | 94.0% | 81.2% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.57 | 46.0 | 4.12e-01 | 92.9% | 82.8% |
| 3vurA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 47.0 | 4.29e-01 | 92.9% | 91.2% |
| 3gz1A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 48.0 | 4.07e-01 | 97.6% | 63.9% |
| 3vldA01 | 1.25.10.50 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.55 | 48.0 | 3.33e-01 | 100.0% | 49.0% |
| 1he8A03 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.55 | 47.0 | 4.34e-01 | 98.8% | 92.8% |
| 4k17B03 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.55 | 48.0 | 3.00e-01 | 100.0% | 26.9% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 45.0 | 4.04e-01 | 96.4% | 65.0% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 45.0 | 4.52e-01 | 95.2% | 100.0% |
| 2ii2A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.53 | 43.0 | 4.39e-01 | 91.7% | 97.5% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 45.0 | 4.29e-01 | 100.0% | 82.2% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 33.0 | 3.67e-01 | 90.5% | 100.0% |
| 2osaA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.51 | 41.0 | 3.19e-01 | 90.5% | 86.2% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.50 | 42.0 | 3.92e-01 | 98.8% | 73.2% |
| 6vbkB02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 31.0 | 3.27e-01 | 92.9% | 67.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032597 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.86 | 72.0 | 6.79e-01 | 89.3% | 75.0% |
| 1889998 | 109.4.1.1259 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 | 0.84 | 78.0 | 6.78e-01 | 100.0% | 94.3% |
| 4974959 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.78 | 63.0 | 4.04e-01 | 94.0% | 20.3% |
| 4960362 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.70 | 62.0 | 5.07e-01 | 95.2% | 64.8% |
| 4958739 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.69 | 59.0 | 4.88e-01 | 100.0% | 54.3% |
| 3453469 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 59.0 | 4.54e-01 | 91.7% | 44.6% |
| 4050316 | 109.4.1.1259 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 | 0.68 | 62.0 | 4.27e-01 | 100.0% | 44.1% |
| 4952173 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.67 | 60.0 | 5.71e-01 | 96.4% | 90.8% |
| 3186734 | 109.4.1.1259 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 | 0.67 | 61.0 | 4.02e-01 | 100.0% | 37.6% |
| 4289290 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.67 | 62.0 | 5.25e-01 | 100.0% | 93.1% |
| 4011075 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.66 | 61.0 | 3.59e-01 | 100.0% | 20.7% |
| 4945178 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.66 | 62.0 | 5.05e-01 | 100.0% | 80.6% |
| 4931534 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.66 | 60.0 | 4.20e-01 | 100.0% | 45.1% |
| 3743714 | 109.4.1.117 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD | 0.66 | 60.0 | 3.85e-01 | 100.0% | 30.0% |
| 4980110 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.65 | 58.0 | 4.96e-01 | 96.4% | 71.9% |
| 3684623 | 109.4.1.1997 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, HEAT_GCN1_C_2 | 0.64 | 60.0 | 4.19e-01 | 100.0% | 58.7% |
| 3329742 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.64 | 58.0 | 3.62e-01 | 100.0% | 25.3% |
| 3782445 | 109.4.1.156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central | 0.63 | 58.0 | 3.32e-01 | 100.0% | 21.0% |
| 3822690 | 109.4.1.204 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ | 0.63 | 55.0 | 4.21e-01 | 98.8% | 93.2% |
| 3847199 | 109.4.1.645 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BLM10_mid | 0.63 | 56.0 | 3.12e-01 | 100.0% | 17.3% |
| 3650993 | 109.4.1.1311 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ | 0.63 | 55.0 | 4.13e-01 | 98.8% | 88.8% |
| 3416129 | 109.4.1.158 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C | 0.63 | 56.0 | 3.71e-01 | 100.0% | 27.9% |
| 3603396 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 57.0 | 3.51e-01 | 100.0% | 20.6% |
| 3297454 | 109.4.1.1146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB | 0.62 | 56.0 | 3.71e-01 | 100.0% | 32.1% |
| 3676679 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.61 | 55.0 | 3.74e-01 | 100.0% | 66.0% |
| 3963715 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 51.0 | 4.94e-01 | 98.8% | 84.2% |
| 4929438 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.60 | 50.0 | 3.83e-01 | 90.5% | 83.2% |
| 3432133 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 47.0 | 4.51e-01 | 95.2% | 73.0% |
| 4021129 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.60 | 52.0 | 4.52e-01 | 97.6% | 90.8% |
| 3437824 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.60 | 52.0 | 3.24e-01 | 98.8% | 22.7% |
| 3821754 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.58 | 41.0 | 4.22e-01 | 89.3% | 78.8% |
| 5044676 | 109.61.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 | 0.58 | 42.0 | 4.76e-01 | 89.3% | 96.9% |
| 4046675 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.57 | 43.0 | 4.31e-01 | 85.7% | 78.8% |
| 3988631 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.57 | 42.0 | 4.42e-01 | 85.7% | 89.3% |
| 3984303 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 47.0 | 4.01e-01 | 94.0% | 64.1% |
| 4817097 | 109.4.1.79 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Bystin | 0.56 | 49.0 | 3.99e-01 | 100.0% | 65.9% |
| 3679337 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 45.0 | 4.25e-01 | 95.2% | 72.4% |
| 3255132 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 50.0 | 3.94e-01 | 100.0% | 77.1% |
| 4615627 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.55 | 41.0 | 4.25e-01 | 85.7% | 89.3% |
| 3374439 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.54 | 45.0 | 3.17e-01 | 98.8% | 42.5% |
| 3960314 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.52 | 45.0 | 4.13e-01 | 100.0% | 78.3% |
D3
medium
residues 93-107_202-225_257-277
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13484.12 best | Fer4_16 | 31.1 | 4.40e-07 | 43.3% | 37.9% |
| PF00037.33 | Fer4 | 23.6 | 4.60e-05 | 40.0% | 91.7% |