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CAKLQF020000010.1__CAH1084877.1__SAMEA5780031_02076__00021
Bact-VirCAKLQF020000010.1__CAH1084877.1__SAMEA5780031_02076__00021
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-123
Domain cluster:
rep: LR597641.1__VUF53985.1__X__00049__D50-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13103.12 best | TonB_2 | 31.3 | 2.50e-07 | 88.7% | 95.3% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.87 | 81.0 | 8.02e-01 | 100.0% | 98.0% |
| 1lr0A00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.82 | 75.0 | 6.88e-01 | 100.0% | 81.7% |
| 1u07B00 | 3.30.2420.10 | Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB | 0.75 | 58.0 | 6.11e-01 | 89.7% | 89.8% |
| 1s62A00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.73 | 63.0 | 6.27e-01 | 94.8% | 89.2% |
| 2k9kA00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.69 | 55.0 | 5.35e-01 | 85.6% | 81.1% |
| 2m2kA00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.67 | 60.0 | 5.47e-01 | 100.0% | 80.9% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.65 | 35.0 | 2.84e-01 | 87.6% | 28.7% |
| 3qwnD01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.63 | 33.0 | 3.85e-01 | 72.2% | 71.4% |
| 1k25B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 42.0 | 3.03e-01 | 73.2% | 98.3% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 39.0 | 2.74e-01 | 70.1% | 97.1% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.56 | 41.0 | 3.62e-01 | 76.3% | 97.9% |
| 2i87B02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 46.0 | 3.97e-01 | 93.8% | 59.1% |
| 6lnhB01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 43.0 | 3.42e-01 | 90.7% | 53.4% |
| 1tf1B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 39.0 | 3.30e-01 | 80.4% | 100.0% |
| 3fryA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.59e-01 | 92.8% | 87.5% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.51 | 38.0 | 3.05e-01 | 80.4% | 83.9% |
| 5hnoA00 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.50 | 38.0 | 3.25e-01 | 81.4% | 63.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 152223 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.87 | 81.0 | 8.02e-01 | 100.0% | 98.0% |
| 3166161 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.86 | 71.0 | 7.59e-01 | 88.7% | 100.0% |
| 3972969 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.85 | 75.0 | 7.61e-01 | 92.8% | 100.0% |
| 3974767 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.85 | 71.0 | 7.23e-01 | 89.7% | 96.8% |
| 4289847 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.83 | 70.0 | 7.13e-01 | 90.7% | 97.9% |
| 5945 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.82 | 75.0 | 6.88e-01 | 100.0% | 81.7% |
| 4096220 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.82 | 72.0 | 7.30e-01 | 93.8% | 96.8% |
| 3385499 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.82 | 69.0 | 7.03e-01 | 90.7% | 98.9% |
| 4628638 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.81 | 70.0 | 7.25e-01 | 92.8% | 97.8% |
| 3942685 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.80 | 67.0 | 6.57e-01 | 92.8% | 83.8% |
| 4324302 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.79 | 57.0 | 6.22e-01 | 74.2% | 94.9% |
| 3839673 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.77 | 69.0 | 6.61e-01 | 96.9% | 84.5% |
| 2599555 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.77 | 66.0 | 6.42e-01 | 92.8% | 83.2% |
| 1161117 | 272.1.1.2 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA | 0.77 | 68.0 | 6.94e-01 | 96.9% | 100.0% |
| 3964903 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.77 | 57.0 | 6.41e-01 | 88.7% | 100.0% |
| 4338610 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.76 | 57.0 | 6.25e-01 | 86.6% | 97.5% |
| 3970711 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.75 | 62.0 | 6.47e-01 | 89.7% | 95.5% |
| 3967921 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.74 | 58.0 | 6.33e-01 | 82.5% | 100.0% |
| 2899924 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.74 | 55.0 | 5.84e-01 | 86.6% | 87.4% |
| 4549660 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.74 | 56.0 | 6.08e-01 | 79.4% | 100.0% |
| 3968588 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.72 | 59.0 | 6.20e-01 | 88.7% | 100.0% |
| 3386099 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.71 | 57.0 | 6.06e-01 | 89.7% | 98.8% |
| 3970590 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.71 | 62.0 | 5.97e-01 | 97.9% | 97.3% |
| 2391752 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.69 | 59.0 | 5.87e-01 | 92.8% | 89.9% |
| 1393818 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.63 | 54.0 | 5.37e-01 | 96.9% | 95.1% |
| 2006873 | 223.11.1.1 ↗ | a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B | 0.62 | 52.0 | 3.93e-01 | 93.8% | 88.8% |
| 3472961 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 41.0 | 3.60e-01 | 70.1% | 60.0% |
| 4139591 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.59 | 48.0 | 4.08e-01 | 88.7% | 96.9% |
| 4336156 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.56 | 41.0 | 3.91e-01 | 95.9% | 64.2% |
| 4946587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 43.0 | 3.91e-01 | 81.4% | 100.0% |
| 3969073 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.54 | 41.0 | 3.40e-01 | 82.5% | 82.6% |
| 5048642 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.54 | 39.0 | 3.61e-01 | 75.3% | 100.0% |
| 3728473 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 45.0 | 3.75e-01 | 99.0% | 82.6% |
| 3621728 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.52 | 37.0 | 3.99e-01 | 90.7% | 91.3% |
| 4994595 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.52 | 40.0 | 3.64e-01 | 84.5% | 98.5% |
| 4140531 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.52 | 44.0 | 2.91e-01 | 99.0% | 56.3% |
| 5044094 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.50 | 37.0 | 2.88e-01 | 79.4% | 100.0% |
| 4928738 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 35.0 | 3.28e-01 | 74.2% | 100.0% |