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CAKLQF020000010.1__CAH1085002.1__SAMEA5780031_02123__00068

Bact-Vir

CAKLQF020000010.1__CAH1085002.1__SAMEA5780031_02123__00068

Identity

Kingdom:
phage

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-92
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06155.18 best GBBH-like_N 59.3 6.90e-16 94.2% 97.7%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.90 79.0 7.86e-01 100.0% 89.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.81 74.0 7.18e-01 100.0% 93.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 43.0 4.79e-01 90.8% 73.9%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 33.0 4.02e-01 95.4% 70.7%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 29.0 3.96e-01 77.0% 89.7%
1mhmB00 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.65 27.0 3.35e-01 70.1% 59.3%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.64 46.0 5.04e-01 97.7% 95.6%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.63 35.0 4.07e-01 83.9% 75.4%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 27.0 3.15e-01 83.9% 51.6%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.63 32.0 4.19e-01 93.1% 97.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 29.0 3.44e-01 72.4% 65.5%
3of7A00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.58 50.0 3.16e-01 94.3% 21.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 3.96e-01 98.9% 79.4%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.54e-01 97.7% 90.8%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 29.0 3.16e-01 93.1% 56.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.64e-01 95.4% 75.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 35.0 3.82e-01 95.4% 81.4%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.54 34.0 3.53e-01 82.8% 67.5%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.60e-01 74.7% 69.0%
5j60A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.81e-01 70.1% 76.1%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.78e-01 93.1% 71.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 4.16e-01 97.7% 89.3%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.52 22.0 2.91e-01 93.1% 73.2%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.70e-01 93.1% 73.2%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.70e-01 93.1% 78.4%
1l9fA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.87e-01 73.6% 88.4%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.46e-01 71.3% 90.1%
2olnA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 36.0 2.74e-01 74.7% 94.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 29.0 3.38e-01 93.1% 84.5%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.95e-01 96.6% 34.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971397 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.96 91.0 8.87e-01 98.9% 93.5%
3646092 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.88 83.0 7.01e-01 100.0% 77.0%
3242411 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.83 77.0 7.08e-01 100.0% 90.0%
3784980 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.82 77.0 7.16e-01 100.0% 89.5%
2455710 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.82 75.0 7.06e-01 100.0% 88.6%
3392529 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.82 69.0 6.85e-01 89.7% 93.3%
391151 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.81 75.0 7.02e-01 100.0% 89.5%
142126 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.81 74.0 6.37e-01 100.0% 66.7%
3178950 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.80 73.0 7.15e-01 100.0% 95.8%
3403184 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.80 73.0 6.98e-01 100.0% 94.0%
3396958 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.80 73.0 6.98e-01 100.0% 96.0%
3403990 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.79 70.0 6.57e-01 94.3% 89.3%
3930660 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.78 71.0 6.85e-01 100.0% 96.9%
4891046 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 43.0 3.61e-01 95.4% 35.8%
4027091 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.67 32.0 3.88e-01 100.0% 69.1%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.66 29.0 3.66e-01 70.1% 67.3%
3583210 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.63 47.0 3.74e-01 100.0% 39.4%
3717674 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 32.0 3.21e-01 78.2% 47.8%
5027344 1170.1.1.0 ↗ beta barrels › IL8-related › IL8-related › IL8 0.62 31.0 3.78e-01 71.3% 74.5%
4679970 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.61 35.0 3.33e-01 100.0% 46.7%
3786120 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 31.0 3.88e-01 78.2% 86.0%
4201648 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.59 33.0 3.98e-01 85.1% 83.1%
3550347 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.59 33.0 3.71e-01 85.1% 71.0%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.58 36.0 3.86e-01 98.9% 72.0%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.58 35.0 3.74e-01 97.7% 69.3%
4000029 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.56 51.0 3.41e-01 100.0% 26.8%
3957803 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.54 27.0 2.75e-01 70.1% 45.9%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 46.0 2.81e-01 100.0% 15.6%
3288357 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 36.0 2.52e-01 73.6% 75.2%
4966210 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 36.0 2.71e-01 74.7% 92.8%
4323062 2003.1.2.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.50 35.0 2.39e-01 73.6% 84.1%
None — 0.50 35.0 2.80e-01 73.6% 89.7%