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CAKLQF020000011.1__CAH1085966.1__SAMEA5780031_02222__00023

Bact-Vir

CAKLQF020000011.1__CAH1085966.1__SAMEA5780031_02222__00023

Identity

Kingdom:
phage

Quality

93.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-98
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01386.25 best Ribosomal_L25p 32.0 1.80e-07 94.2% 50.6%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.97 92.0 7.31e-01 100.0% 55.3%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.88 81.0 6.58e-01 100.0% 57.1%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.87 78.0 6.52e-01 100.0% 60.5%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.84 74.0 6.05e-01 100.0% 54.8%
4h3sA02 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.70 60.0 4.68e-01 100.0% 78.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.68 57.0 4.72e-01 100.0% 57.0%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.67 57.0 3.90e-01 98.1% 58.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.27e-01 71.2% 66.0%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 4.47e-01 100.0% 57.3%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 3.91e-01 100.0% 63.4%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.63 53.0 4.49e-01 98.1% 63.4%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.63 50.0 4.15e-01 100.0% 60.2%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 3.54e-01 90.4% 32.3%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 51.0 4.27e-01 98.1% 77.5%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 37.0 4.00e-01 73.1% 71.4%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 52.0 4.42e-01 100.0% 68.4%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 51.0 4.20e-01 100.0% 88.6%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.19e-01 94.2% 52.2%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 49.0 3.54e-01 98.1% 72.6%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 45.0 3.36e-01 82.7% 78.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 47.0 3.12e-01 98.1% 20.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.17e-01 90.4% 73.0%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 39.0 3.60e-01 71.2% 51.4%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 48.0 3.94e-01 100.0% 58.6%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.57 41.0 3.59e-01 98.1% 47.7%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 45.0 3.79e-01 98.1% 64.4%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.89e-01 90.4% 69.0%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.58e-01 80.8% 73.3%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 41.0 3.65e-01 98.1% 75.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 44.0 3.91e-01 98.1% 66.3%
2y3cA00 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.52 41.0 2.72e-01 96.2% 95.7%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.80e-01 88.5% 82.8%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.06e-01 76.9% 96.8%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 40.0 2.86e-01 94.2% 56.8%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 2.90e-01 100.0% 35.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.50 37.0 2.81e-01 84.6% 74.0%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4601397 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.99 94.0 7.39e-01 100.0% 54.7%
4864109 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.98 93.0 7.30e-01 100.0% 53.6%
4062422 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.98 93.0 7.35e-01 100.0% 54.7%
4065090 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.96 90.0 7.15e-01 100.0% 54.7%
4399696 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.96 90.0 7.14e-01 100.0% 54.7%
3964275 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.96 90.0 7.15e-01 100.0% 54.7%
4618294 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.94 87.0 6.88e-01 100.0% 53.7%
4120365 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.93 86.0 6.75e-01 100.0% 52.0%
4065495 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.93 86.0 6.73e-01 100.0% 52.0%
3665538 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.92 85.0 6.40e-01 100.0% 53.0%
4886608 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.92 85.0 6.81e-01 100.0% 54.7%
4052507 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.92 86.0 6.82e-01 100.0% 55.8%
4681723 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 83.0 6.63e-01 100.0% 53.7%
4452640 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 81.0 6.48e-01 100.0% 52.6%
4344650 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 84.0 6.59e-01 100.0% 55.0%
4161236 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 81.0 6.60e-01 98.1% 55.6%
4145938 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 83.0 6.49e-01 100.0% 51.0%
4670852 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.91 82.0 6.55e-01 100.0% 53.7%
4209479 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 82.0 6.44e-01 100.0% 51.0%
4083330 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 79.0 6.36e-01 100.0% 52.6%
4452931 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 83.0 6.41e-01 100.0% 52.4%
4554927 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 83.0 6.51e-01 100.0% 55.0%
4168875 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 81.0 6.48e-01 100.0% 53.7%
4597893 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.90 82.0 6.49e-01 100.0% 53.0%
1108022 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 82.0 6.75e-01 100.0% 59.1%
4118502 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 80.0 6.45e-01 100.0% 53.7%
4073311 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 78.0 6.21e-01 100.0% 50.0%
3286692 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 80.0 6.34e-01 100.0% 51.0%
4568828 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 81.0 6.44e-01 100.0% 56.0%
4668753 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 81.0 6.42e-01 100.0% 53.0%
4414535 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.89 81.0 6.41e-01 100.0% 52.0%
4197939 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.88 79.0 6.38e-01 100.0% 53.7%
3332553 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.88 80.0 5.98e-01 100.0% 52.5%
3253514 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.88 81.0 6.37e-01 100.0% 54.0%
4080757 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.88 79.0 6.36e-01 100.0% 53.7%
4188763 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.88 80.0 6.24e-01 100.0% 54.3%
4672167 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.88 75.0 6.08e-01 100.0% 51.6%
4312484 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 79.0 6.18e-01 100.0% 54.3%
4248625 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 80.0 6.30e-01 100.0% 55.0%
4231034 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 79.0 6.27e-01 100.0% 52.0%
4246654 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 80.0 6.31e-01 100.0% 53.0%
4128879 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 79.0 6.37e-01 100.0% 54.7%
4323001 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 79.0 6.24e-01 100.0% 54.0%
4129323 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 79.0 6.35e-01 100.0% 54.7%
4324086 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.87 78.0 6.31e-01 100.0% 56.8%
4089549 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.86 77.0 6.21e-01 98.1% 54.7%
4493865 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.86 79.0 6.23e-01 100.0% 54.0%
4026863 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.86 77.0 6.21e-01 98.1% 61.1%
4433128 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.85 75.0 6.10e-01 98.1% 53.7%
3385880 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.85 75.0 6.17e-01 100.0% 55.6%
4139867 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.85 75.0 6.10e-01 100.0% 53.7%
4197235 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.85 74.0 6.05e-01 100.0% 53.7%
4069101 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.84 77.0 6.11e-01 100.0% 52.0%
1763269 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.84 74.0 6.00e-01 100.0% 53.7%
3510186 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.83 73.0 5.96e-01 100.0% 53.7%
4265687 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.83 75.0 6.07e-01 100.0% 54.7%
3353869 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 74.0 6.25e-01 100.0% 95.3%
4259249 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.81 72.0 5.88e-01 100.0% 55.8%
3575776 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 56.0 5.69e-01 78.8% 90.0%
3191369 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.70 61.0 4.60e-01 100.0% 86.2%
5081561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 61.0 5.32e-01 100.0% 88.7%
5042812 387.1.3.0 few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.68 48.0 5.11e-01 100.0% 86.7%
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 48.0 4.14e-01 86.5% 47.1%
4945213 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.67 57.0 4.61e-01 100.0% 88.6%
5020511 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.66 52.0 4.18e-01 100.0% 41.7%
3636050 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 58.0 4.50e-01 100.0% 46.1%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.88e-01 92.3% 34.8%
3960589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.17e-01 96.2% 48.3%
3974181 1.1.5.88 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.63 54.0 4.59e-01 100.0% 68.9%
3923769 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 52.0 4.59e-01 98.1% 76.2%
3846130 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.61 50.0 3.49e-01 100.0% 28.8%
2834343 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.61 50.0 3.60e-01 100.0% 70.9%
4868829 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.60 48.0 3.87e-01 100.0% 82.3%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.55 40.0 3.95e-01 84.6% 75.9%
4974179 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 46.0 3.71e-01 100.0% 47.3%
4330191 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.53 45.0 3.10e-01 96.2% 27.1%
3703112 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.32e-01 100.0% 41.7%
3180942 2.1.1.194 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.51 39.0 3.05e-01 96.2% 91.3%