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CAKLQF020000011.1__CAH1085990.1__SAMEA5780031_02237__00037
Bact-VirCAKLQF020000011.1__CAH1085990.1__SAMEA5780031_02237__00037
Identity
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-122
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04315.18 best | EpmC | 94.6 | 7.60e-27 | 82.6% | 44.4% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbqB00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.67 | 49.0 | 3.90e-01 | 76.7% | 89.3% |
| 6fgcA01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.64 | 49.0 | 3.87e-01 | 82.6% | 74.0% |
| 5zg8A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 50.0 | 3.38e-01 | 83.7% | 67.2% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 45.0 | 3.48e-01 | 76.7% | 96.0% |
| 4c91A01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.61 | 51.0 | 4.14e-01 | 91.9% | 83.0% |
| 1k9fA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.60 | 50.0 | 4.47e-01 | 93.0% | 88.8% |
| 3cqbB01 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.60 | 49.0 | 4.81e-01 | 91.9% | 90.4% |
| 2x5rA01 | 3.30.470.40 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.59 | 44.0 | 4.06e-01 | 80.2% | 87.0% |
| 5e3xA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.59 | 50.0 | 3.17e-01 | 96.5% | 41.5% |
| 3hq2B00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.58 | 48.0 | 3.08e-01 | 96.5% | 40.4% |
| 4paaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 46.0 | 3.40e-01 | 89.5% | 95.1% |
| 6ks6G02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.57 | 35.0 | 3.32e-01 | 86.0% | 50.0% |
| 2cgeA03 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.57 | 45.0 | 3.79e-01 | 87.2% | 75.2% |
| 3k7lA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.56 | 46.0 | 3.53e-01 | 89.5% | 83.2% |
| 2kknA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.56 | 40.0 | 3.34e-01 | 74.4% | 91.7% |
| 6rh8A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 44.0 | 3.63e-01 | 91.9% | 93.0% |
| 3g1wA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 3.35e-01 | 80.2% | 71.2% |
| 2memA00 | 3.90.1150.190 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain | 0.52 | 39.0 | 3.49e-01 | 77.9% | 63.0% |
| 1xjcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 3.25e-01 | 76.7% | 94.4% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 44.0 | 4.33e-01 | 94.2% | 88.2% |
| 2x7xA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 37.0 | 3.22e-01 | 77.9% | 94.9% |
| 4q20A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 43.0 | 3.57e-01 | 93.0% | 90.6% |
| 2x8xX01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 30.0 | 3.13e-01 | 76.7% | 65.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163874 | 2498.3.1.1 ↗ | mixed a+b and a/b › Zincin-like › Uncharacterized protein YfcM › Uncharacterized protein YfcM › EpmC | 0.94 | 87.0 | 6.62e-01 | 98.8% | 47.4% |
| 1503835 | 2498.3.1.1 ↗ | mixed a+b and a/b › Zincin-like › Uncharacterized protein YfcM › Uncharacterized protein YfcM › EpmC | 0.88 | 65.0 | 7.39e-01 | 77.9% | 100.0% |
| 4051075 | 2498.2.1.2 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_67N | 0.66 | 52.0 | 4.55e-01 | 84.9% | 80.0% |
| 3947708 | 2498.1.1.66 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › CobT | 0.64 | 54.0 | 3.97e-01 | 95.3% | 98.4% |
| 4957048 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.64 | 51.0 | 4.31e-01 | 87.2% | 81.4% |
| 3604164 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.63 | 51.0 | 4.41e-01 | 86.0% | 92.3% |
| 5053045 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 51.0 | 3.84e-01 | 93.0% | 54.3% |
| 5043167 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.62 | 45.0 | 3.98e-01 | 75.6% | 88.8% |
| 4982457 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.62 | 45.0 | 3.59e-01 | 77.9% | 90.6% |
| 4941824 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.62 | 51.0 | 3.57e-01 | 93.0% | 66.1% |
| 4210571 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.62 | 48.0 | 4.47e-01 | 82.6% | 86.7% |
| 3752420 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.61 | 43.0 | 2.94e-01 | 74.4% | 98.5% |
| 3279067 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 47.0 | 3.31e-01 | 88.4% | 59.7% |
| 3957911 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 47.0 | 3.44e-01 | 88.4% | 69.4% |
| 4458442 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.60 | 48.0 | 4.45e-01 | 89.5% | 76.4% |
| 4456704 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.59 | 48.0 | 3.41e-01 | 93.0% | 59.0% |
| 5010082 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.58 | 43.0 | 3.50e-01 | 79.1% | 88.8% |
| 4006806 | 2008.1.1.51 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC | 0.58 | 44.0 | 3.56e-01 | 81.4% | 95.4% |
| 5023985 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 45.0 | 3.20e-01 | 84.9% | 93.1% |
| 4278662 | 2498.4.1.0 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) | 0.58 | 42.0 | 3.89e-01 | 76.7% | 76.3% |
| 3957469 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.57 | 47.0 | 4.00e-01 | 93.0% | 81.3% |
| 4983855 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.56 | 45.0 | 3.52e-01 | 93.0% | 88.0% |
| 3414090 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.56 | 45.0 | 3.32e-01 | 93.0% | 80.0% |
| 4957647 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.55 | 43.0 | 3.26e-01 | 87.2% | 69.1% |
| 5018719 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.55 | 46.0 | 3.85e-01 | 98.8% | 77.1% |
| 3806861 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.55 | 45.0 | 3.28e-01 | 93.0% | 70.2% |
| 4030219 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.54 | 36.0 | 2.57e-01 | 90.7% | 22.7% |
| 4165654 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.53 | 40.0 | 2.95e-01 | 80.2% | 29.3% |
| 3933910 | 2498.1.1.2 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin | 0.53 | 43.0 | 3.37e-01 | 93.0% | 68.5% |
| 3402272 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.52 | 43.0 | 3.30e-01 | 95.3% | 73.8% |
| 2754894 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.52 | 46.0 | 4.09e-01 | 97.7% | 71.9% |
| None | — | 0.51 | 45.0 | 3.36e-01 | 100.0% | 71.3% | |
| 3967645 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.51 | 44.0 | 4.33e-01 | 96.5% | 93.7% |
| 3961087 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.51 | 44.0 | 4.14e-01 | 96.5% | 90.5% |
D2
medium
residues 123-220
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04315.18 best | EpmC | 75.2 | 7.00e-21 | 93.9% | 50.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.62 | 49.0 | 4.21e-01 | 85.7% | 71.1% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 46.0 | 4.42e-01 | 98.0% | 69.9% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.60 | 47.0 | 4.65e-01 | 99.0% | 78.5% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.59 | 42.0 | 4.23e-01 | 93.9% | 74.0% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 39.0 | 3.91e-01 | 93.9% | 71.7% |
| 2a2fX01 | 1.10.357.30 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex subunit Sec15 C-terminal domain, N-terminal subdomain | 0.54 | 48.0 | 4.02e-01 | 98.0% | 82.0% |
| 6bmeA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 43.0 | 4.00e-01 | 94.9% | 67.7% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.53 | 31.0 | 3.67e-01 | 71.4% | 86.2% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.53 | 32.0 | 3.84e-01 | 75.5% | 95.2% |
| 3ajfA00 | 1.20.1440.190 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein | 0.53 | 31.0 | 3.27e-01 | 93.9% | 62.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 36.0 | 3.67e-01 | 93.9% | 73.4% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 44.0 | 3.69e-01 | 100.0% | 84.2% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.50 | 32.0 | 3.35e-01 | 90.8% | 67.7% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.50 | 31.0 | 3.50e-01 | 80.6% | 84.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163874 | 2498.3.1.1 ↗ | mixed a+b and a/b › Zincin-like › Uncharacterized protein YfcM › Uncharacterized protein YfcM › EpmC | 0.93 | 85.0 | 6.72e-01 | 95.9% | 52.6% |
| 3247132 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.63 | 43.0 | 3.57e-01 | 100.0% | 38.9% |
| 3462047 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.59 | 38.0 | 3.81e-01 | 100.0% | 61.9% |
| 3353431 | 109.4.1.1336 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 | 0.58 | 36.0 | 3.58e-01 | 98.0% | 58.1% |
| 4927302 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.56 | 50.0 | 4.45e-01 | 100.0% | 77.9% |
| 4972788 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.55 | 35.0 | 3.38e-01 | 87.8% | 56.4% |
| 3338874 | 109.4.1.1475 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27629 | 0.54 | 48.0 | 3.79e-01 | 100.0% | 71.0% |
| 3708859 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.53 | 39.0 | 3.83e-01 | 93.9% | 72.4% |
| 3165010 | 632.16.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › N-terminal domain of a replication restart primosome factor PriC › N-terminal domain of a replication restart primosome factor PriC › PriC | 0.51 | 32.0 | 3.40e-01 | 94.9% | 72.9% |
| 3375915 | 109.4.1.1280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long | 0.50 | 41.0 | 3.46e-01 | 89.8% | 61.8% |
| 3435775 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.50 | 41.0 | 3.32e-01 | 100.0% | 45.1% |