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CAKLQF020000011.1__CAH1086056.1__SAMEA5780031_02303__00103

Bact-Vir

CAKLQF020000011.1__CAH1086056.1__SAMEA5780031_02303__00103

Identity

Kingdom:
phage

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 280-377
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00512.32 best HisKA 51.8 9.60e-14 65.3% 97.0%
PF00672.31 HAMP 28.4 2.40e-06 31.6% 56.6%
D2 high residues 386-532
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02518.32 best HATPase_c 87.7 9.80e-25 74.8% 95.5%
D3 medium residues 1-133
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kyzA00 3.30.450.170 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component histidine kinase, sensor domain 0.69 49.0 5.29e-01 72.9% 96.4%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 46.0 4.74e-01 72.9% 96.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 21.0 3.02e-01 71.4% 65.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 32.0 3.61e-01 71.4% 68.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 26.0 3.28e-01 72.2% 70.7%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.55 30.0 2.92e-01 74.4% 44.6%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 32.0 2.28e-01 90.2% 18.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973100 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.89 59.0 7.13e-01 72.2% 100.0%
3982739 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.76 52.0 5.97e-01 72.9% 93.0%
4335962 223.1.1.95 a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.70 55.0 5.56e-01 81.2% 96.9%
4014955 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.65 35.0 3.54e-01 75.2% 53.1%
3194166 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 31.0 3.24e-01 75.2% 50.4%
4217727 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 49.0 4.95e-01 85.7% 96.2%
5035198 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 54.0 4.74e-01 96.2% 82.6%
3733928 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 34.0 3.44e-01 75.2% 56.2%
3968365 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 52.0 4.85e-01 96.2% 82.4%
4996826 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 52.0 3.49e-01 100.0% 69.2%
4453642 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 4.30e-01 90.2% 68.6%
4424918 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.55 32.0 2.58e-01 72.9% 28.6%
4975015 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.54 32.0 2.68e-01 75.2% 31.4%
4987158 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.54 32.0 2.64e-01 74.4% 30.6%
4404169 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.54 33.0 2.68e-01 75.9% 31.4%
3510918 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 29.0 2.94e-01 75.9% 51.9%
4443286 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 33.0 2.63e-01 75.2% 30.8%
3702063 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.53 35.0 3.87e-01 75.2% 82.6%
141278 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.53 38.0 3.33e-01 75.2% 94.6%
4443775 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.52 32.0 2.72e-01 75.2% 35.9%
D4 medium residues 135-237
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 65.0 5.76e-01 99.0% 92.5%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 64.0 5.98e-01 97.1% 97.6%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.71 62.0 5.57e-01 96.1% 97.2%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 49.0 4.89e-01 72.8% 92.6%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 47.0 5.06e-01 71.8% 100.0%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 58.0 5.36e-01 98.1% 98.5%
1f98A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 53.0 5.01e-01 90.3% 96.0%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 4.70e-01 81.6% 91.2%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 45.0 3.19e-01 74.8% 95.3%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 46.0 3.20e-01 77.7% 94.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 34.0 3.46e-01 96.1% 56.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 30.0 3.51e-01 86.4% 70.4%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 43.0 3.91e-01 79.6% 75.5%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 4.08e-01 83.5% 87.0%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 41.0 3.76e-01 77.7% 82.6%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 43.0 3.90e-01 80.6% 80.0%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.56 41.0 3.63e-01 78.6% 64.9%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 28.0 3.37e-01 86.4% 71.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 32.0 3.55e-01 70.9% 74.7%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.54 38.0 3.43e-01 73.8% 95.1%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 35.0 3.62e-01 71.8% 70.0%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 36.0 2.89e-01 71.8% 59.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 29.0 3.37e-01 91.3% 78.3%
3edpA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 37.0 3.33e-01 75.7% 71.2%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.28e-01 76.7% 84.7%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.51 35.0 3.22e-01 99.0% 54.0%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 44.0 3.33e-01 100.0% 98.6%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 34.0 2.39e-01 95.1% 22.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973100 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.83 68.0 7.29e-01 94.2% 98.9%
3982739 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.79 68.0 6.91e-01 98.1% 94.0%
4353676 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.78 71.0 6.44e-01 99.0% 97.8%
5053325 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.75 53.0 5.17e-01 71.8% 100.0%
3582164 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.74 64.0 4.56e-01 94.2% 97.0%
4952182 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.73 51.0 4.97e-01 70.9% 100.0%
4670966 223.1.1.81 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.73 65.0 5.96e-01 98.1% 97.8%
5046054 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.73 55.0 5.29e-01 80.6% 99.2%
4045675 223.1.1.81 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.73 66.0 5.26e-01 99.0% 67.5%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.72 51.0 5.02e-01 72.8% 100.0%
3561487 223.1.1.108 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.72 61.0 3.85e-01 91.3% 98.3%
3954468 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.72 65.0 5.29e-01 100.0% 73.2%
5018913 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.71 51.0 4.89e-01 74.8% 96.7%
5075671 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.71 54.0 4.01e-01 79.6% 48.4%
3248029 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.71 52.0 4.66e-01 77.7% 84.1%
4421841 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 63.0 4.56e-01 98.1% 83.9%
5018234 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.70 61.0 4.45e-01 97.1% 89.3%
4134441 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 61.0 5.73e-01 96.1% 96.8%
4996826 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.69 62.0 3.90e-01 100.0% 54.7%
5047353 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.68 52.0 4.86e-01 79.6% 94.4%
2724284 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.68 58.0 5.24e-01 92.2% 89.9%
5047435 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 4.47e-01 76.7% 76.4%
3413207 223.1.1.98 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.68 54.0 3.94e-01 85.4% 100.0%
1673309 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 47.0 4.78e-01 71.8% 92.1%
3968742 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 55.0 5.29e-01 89.3% 100.0%
5007977 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.67 47.0 4.35e-01 73.8% 79.3%
5002430 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.67 59.0 5.18e-01 98.1% 81.9%
3276714 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 49.0 4.36e-01 78.6% 69.3%
3772335 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.66 48.0 4.38e-01 75.7% 70.4%
4950582 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 51.0 4.73e-01 81.6% 96.9%
4964877 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 50.0 4.67e-01 79.6% 96.0%
3278791 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 58.0 5.66e-01 95.1% 99.1%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 4.34e-01 74.8% 76.9%
5002480 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 58.0 4.87e-01 98.1% 68.0%
4961950 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 55.0 4.82e-01 92.2% 81.3%
3700841 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 49.0 3.85e-01 78.6% 61.9%
3277617 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 57.0 5.67e-01 99.0% 95.2%
4614514 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 48.0 4.81e-01 78.6% 100.0%
3969990 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 57.0 4.27e-01 97.1% 49.6%
4977365 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.61 42.0 3.88e-01 70.9% 71.5%
3285474 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.60 44.0 3.36e-01 77.7% 89.7%
3286547 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.58 42.0 3.73e-01 77.7% 80.6%
4962758 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 50.0 4.60e-01 99.0% 77.8%
4958968 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 49.0 4.32e-01 99.0% 68.4%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.55 31.0 3.41e-01 92.2% 67.5%
5041270 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 49.0 3.41e-01 99.0% 93.4%
3695010 3435.1.1.3 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.55 33.0 2.59e-01 94.2% 27.0%
3618659 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.55 46.0 4.67e-01 96.1% 94.0%
4776756 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.55 39.0 3.53e-01 73.8% 58.5%
4963053 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 4.36e-01 96.1% 76.8%
3215688 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 41.0 2.69e-01 81.6% 29.1%
3469315 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 45.0 2.97e-01 91.3% 27.3%
3246581 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 41.0 3.00e-01 83.5% 48.2%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.53 31.0 3.61e-01 96.1% 82.9%
None 0.53 42.0 3.03e-01 87.4% 27.3%
3550735 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.52 38.0 3.41e-01 76.7% 81.0%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.52 45.0 4.01e-01 97.1% 78.1%
5041249 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 32.0 3.64e-01 97.1% 87.1%
4627726 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.51 44.0 3.79e-01 96.1% 88.5%