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CAKLQF020000012.1__CAH1086433.1__SAMEA5780031_02390__00056

Bact-Vir

CAKLQF020000012.1__CAH1086433.1__SAMEA5780031_02390__00056

Identity

Kingdom:
phage

Quality

89.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-201
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00926.25 best DHBP_synthase 288.4 3.10e-86 98.0% 100.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g57A00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.98 94.0 9.25e-01 100.0% 93.7%
1pvwA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.95 92.0 8.75e-01 99.0% 99.1%
3vezA03 3.90.870.20 Alpha Beta › Alpha-Beta Complex › DHBP synthase › Carbamoyltransferase, C-terminal domain 0.67 56.0 5.51e-01 96.9% 83.4%
2ahmH02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.55 26.0 3.64e-01 81.6% 92.5%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 28.0 3.71e-01 99.5% 99.0%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 25.0 3.30e-01 91.8% 80.2%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 24.0 3.43e-01 84.7% 92.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944412 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.99 98.0 9.71e-01 100.0% 97.5%
4187753 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.99 97.0 9.69e-01 100.0% 97.5%
3163803 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.99 97.0 9.47e-01 100.0% 93.3%
3737588 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.99 96.0 9.57e-01 99.0% 98.0%
3649067 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.98 97.0 9.22e-01 100.0% 97.3%
3183668 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.98 96.0 8.85e-01 100.0% 99.2%
3953794 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.96 92.0 9.25e-01 100.0% 97.4%
5027278 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.95 92.0 8.46e-01 100.0% 95.8%
5083078 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.94 92.0 8.53e-01 100.0% 97.0%
4329567 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.94 85.0 8.87e-01 100.0% 100.0%
4680908 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.94 87.0 8.84e-01 100.0% 97.9%
4971832 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.93 91.0 8.69e-01 100.0% 99.1%
4975786 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.93 90.0 8.37e-01 100.0% 97.9%
4928295 297.1.1.1 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase 0.91 86.0 8.80e-01 98.5% 100.0%
4255923 297.1.1.0 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.85 69.0 7.38e-01 100.0% 95.9%
4426567 297.1.1.0 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.84 62.0 6.94e-01 100.0% 93.7%
3184225 297.1.1.2 a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.63 52.0 4.92e-01 95.9% 72.8%
3285931 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 27.0 3.38e-01 93.4% 73.0%
D2 high residues 206-369
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00925.26 best GTP_cyclohydro2 114.4 5.80e-33 97.6% 97.6%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.87 66.0 7.50e-01 99.4% 100.0%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.79 74.0 7.41e-01 99.4% 98.8%
3ujpA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.65 36.0 4.23e-01 79.3% 76.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 56.0 4.72e-01 92.1% 96.6%
4q34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 54.0 4.34e-01 93.3% 94.7%
4i3fA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 54.0 4.41e-01 91.5% 95.1%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 54.0 4.43e-01 93.3% 95.5%
2hc9A02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 54.0 4.27e-01 95.1% 84.2%
5w56B02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 35.0 3.88e-01 78.7% 69.5%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 56.0 4.93e-01 99.4% 95.7%
4qa9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 57.0 4.21e-01 100.0% 96.4%
7v8uA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 4.46e-01 92.1% 97.2%
3pfoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 53.0 4.32e-01 95.1% 78.2%
3fcxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 54.0 4.51e-01 98.8% 78.2%
1mtzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 51.0 4.17e-01 91.5% 93.1%
4qlaB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 54.0 4.10e-01 100.0% 95.0%
5k8pD01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 52.0 4.30e-01 97.0% 77.9%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 52.0 4.31e-01 97.0% 78.5%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 4.22e-01 93.9% 90.0%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 4.14e-01 92.1% 96.1%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 51.0 3.80e-01 95.7% 61.3%
4h18A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 52.0 4.21e-01 100.0% 90.7%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 42.0 3.51e-01 75.6% 77.5%
3kxpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 4.11e-01 91.5% 96.3%
6vssA01 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.55 45.0 3.66e-01 86.6% 93.9%
3i6sA03 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.55 28.0 3.14e-01 92.7% 59.2%
1p5zB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.64e-01 76.8% 89.5%
2xwpA01 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 4.33e-01 76.8% 91.8%
4iv5A01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.52 31.0 3.20e-01 78.0% 60.5%
3q9cA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.51 38.0 3.06e-01 77.4% 96.2%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 38.0 3.62e-01 76.2% 86.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472991 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.93 76.0 8.32e-01 98.8% 99.3%
4289183 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.88 82.0 8.37e-01 100.0% 100.0%
3964749 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.87 81.0 8.22e-01 100.0% 98.1%
3388088 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.87 69.0 7.65e-01 99.4% 100.0%
3820177 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.84 81.0 8.11e-01 100.0% 99.4%
3955929 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.83 68.0 7.34e-01 93.9% 99.3%
5027334 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.82 78.0 7.48e-01 99.4% 96.2%
4043920 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.81 72.0 7.02e-01 100.0% 86.3%
4944413 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.81 77.0 7.12e-01 100.0% 85.5%
3969991 7580.1.1.0 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like 0.80 76.0 7.41e-01 100.0% 97.7%
1680572 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.79 75.0 7.42e-01 100.0% 98.2%
4982336 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.79 74.0 6.78e-01 100.0% 81.9%
3289106 7580.1.1.1 a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.77 72.0 6.74e-01 100.0% 90.3%
3973306 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.64 35.0 4.19e-01 78.7% 78.2%
4937600 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.63 33.0 4.08e-01 78.0% 79.0%
4870631 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.63 55.0 4.66e-01 91.5% 96.9%
3367078 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.62 30.0 3.38e-01 90.9% 57.6%
4959452 7579.1.1.27 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.61 56.0 4.55e-01 100.0% 78.3%
3253431 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.61 56.0 4.62e-01 100.0% 96.1%
4977909 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 30.0 3.57e-01 82.9% 69.1%
3966598 2007.1.6.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain 0.59 46.0 5.03e-01 92.1% 99.3%
3913220 7579.1.1.4 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9,BD-FAE 0.59 53.0 4.43e-01 94.5% 94.7%
3391186 7579.1.1.101 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE 0.59 53.0 3.69e-01 100.0% 73.4%
10892 2007.1.6.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N 0.58 48.0 5.04e-01 93.3% 97.3%
3937330 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.58 53.0 4.09e-01 99.4% 67.7%
3748895 7579.1.1.89 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.58 52.0 4.30e-01 99.4% 73.6%
4068344 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.57 51.0 4.11e-01 97.0% 96.7%
5024078 2006.1.3.5 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF2100 0.56 39.0 4.25e-01 79.3% 85.9%
3971932 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.56 49.0 3.31e-01 95.1% 40.0%
1157718 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.55 38.0 4.22e-01 90.2% 88.5%
3230598 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 33.0 3.50e-01 95.7% 65.3%
3497992 2484.1.1.72 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.54 37.0 3.55e-01 76.8% 60.5%
4305337 7512.1.1.117 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28, Glyco_tran_28_C 0.53 40.0 3.06e-01 78.7% 36.5%
4972398 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 4.10e-01 90.2% 80.0%
4332786 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.53 40.0 3.90e-01 78.7% 76.1%
3867103 3417.1.1.1 a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.52 33.0 4.02e-01 97.6% 98.1%
5080232 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.52 37.0 3.70e-01 74.4% 94.3%
3270890 2484.1.1.72 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.50 35.0 3.37e-01 76.8% 62.2%
4981906 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 38.0 3.85e-01 78.0% 96.9%