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CAKLQF020000012.1__CAH1086437.1__SAMEA5780031_02392__00058
Bact-VirCAKLQF020000012.1__CAH1086437.1__SAMEA5780031_02392__00058
Identity
- Kingdom:
- phage
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-63
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.79 | 55.0 | 4.24e-01 | 73.0% | 40.3% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 57.0 | 6.41e-01 | 84.1% | 100.0% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 5.62e-01 | 79.4% | 100.0% |
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 56.0 | 5.64e-01 | 82.5% | 91.9% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 66.0 | 5.62e-01 | 100.0% | 61.8% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 44.0 | 5.10e-01 | 84.1% | 88.6% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 53.0 | 5.04e-01 | 79.4% | 66.2% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.72 | 51.0 | 5.11e-01 | 87.3% | 72.3% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 61.0 | 4.48e-01 | 98.4% | 49.4% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.70 | 60.0 | 5.14e-01 | 98.4% | 63.8% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.70 | 50.0 | 4.30e-01 | 87.3% | 48.0% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 50.0 | 4.51e-01 | 77.8% | 80.5% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 56.0 | 4.90e-01 | 93.7% | 61.6% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 59.0 | 4.59e-01 | 100.0% | 92.4% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 53.0 | 5.28e-01 | 96.8% | 84.8% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 51.0 | 5.06e-01 | 84.1% | 83.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 47.0 | 4.66e-01 | 77.8% | 87.7% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 50.0 | 4.82e-01 | 84.1% | 76.1% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.64 | 51.0 | 4.76e-01 | 93.7% | 71.1% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 56.0 | 4.66e-01 | 100.0% | 86.8% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.62 | 40.0 | 4.01e-01 | 81.0% | 64.6% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.61 | 43.0 | 3.71e-01 | 85.7% | 44.0% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 51.0 | 4.29e-01 | 95.2% | 76.1% |
| 2jucA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.58 | 44.0 | 4.66e-01 | 87.3% | 98.2% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.58 | 43.0 | 4.13e-01 | 82.5% | 82.7% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.57 | 46.0 | 4.58e-01 | 93.7% | 81.8% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 50.0 | 3.40e-01 | 98.4% | 29.7% |
| 2x0sA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.54 | 39.0 | 3.93e-01 | 77.8% | 93.8% |
| 5jxxA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.54 | 42.0 | 4.19e-01 | 92.1% | 87.9% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 48.0 | 3.29e-01 | 98.4% | 29.6% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 47.0 | 3.25e-01 | 98.4% | 31.4% |
| 4inzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 42.0 | 2.79e-01 | 95.2% | 57.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4299521 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.90 | 76.0 | 5.58e-01 | 90.5% | 37.3% |
| 4979555 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.78 | 62.0 | 6.35e-01 | 85.7% | 90.0% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.76 | 51.0 | 5.74e-01 | 76.2% | 97.8% |
| 3664902 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.75 | 56.0 | 4.79e-01 | 87.3% | 50.0% |
| 3324409 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.75 | 54.0 | 5.71e-01 | 84.1% | 89.1% |
| 3934128 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 49.0 | 5.19e-01 | 81.0% | 81.8% |
| 3928087 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.73 | 51.0 | 4.93e-01 | 81.0% | 65.7% |
| 3937317 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.72 | 51.0 | 5.55e-01 | 84.1% | 94.0% |
| 3244407 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 54.0 | 5.53e-01 | 85.7% | 86.7% |
| 3282520 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.71 | 52.0 | 5.04e-01 | 85.7% | 68.6% |
| 4051059 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.71 | 49.0 | 5.17e-01 | 85.7% | 85.5% |
| 3929264 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.68 | 56.0 | 4.94e-01 | 92.1% | 81.1% |
| 3214724 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.68 | 49.0 | 4.94e-01 | 81.0% | 76.9% |
| 1546185 | 2499.2.1.3 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › T6SS_VipA | 0.66 | 57.0 | 5.30e-01 | 98.4% | 77.2% |
| 3590550 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 51.0 | 5.13e-01 | 100.0% | 83.1% |
| 3787963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 46.0 | 4.56e-01 | 82.5% | 70.8% |
| 3948842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 5.20e-01 | 82.5% | 94.5% |
| 3252236 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.65 | 50.0 | 5.20e-01 | 85.7% | 98.2% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.65 | 47.0 | 5.14e-01 | 79.4% | 100.0% |
| 3783162 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 53.0 | 4.54e-01 | 95.2% | 88.6% |
| 3217577 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.63 | 47.0 | 4.77e-01 | 84.1% | 85.0% |
| 3893171 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.62 | 49.0 | 5.00e-01 | 93.7% | 93.3% |
| 3184342 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 45.0 | 4.65e-01 | 88.9% | 86.7% |
| 5058464 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.58 | 42.0 | 3.99e-01 | 81.0% | 62.5% |
| 4955389 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.57 | 40.0 | 4.18e-01 | 76.2% | 92.7% |
| 3968369 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.52 | 42.0 | 4.31e-01 | 96.8% | 93.3% |
| 3181966 | 509.1.1.13 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 | 0.51 | 38.0 | 3.72e-01 | 85.7% | 82.7% |
D2
medium
residues 64-142
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01029.24 best | NusB | 70.3 | 3.00e-19 | 94.9% | 54.9% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.97 | 88.0 | 7.08e-01 | 93.7% | 56.4% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.94 | 90.0 | 7.16e-01 | 100.0% | 57.4% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.91 | 86.0 | 6.96e-01 | 100.0% | 58.0% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 53.0 | 4.86e-01 | 74.7% | 87.3% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 59.0 | 4.36e-01 | 100.0% | 91.5% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.65 | 54.0 | 5.26e-01 | 100.0% | 85.6% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 55.0 | 3.69e-01 | 100.0% | 32.0% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.62 | 47.0 | 4.46e-01 | 82.3% | 69.1% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.61 | 53.0 | 5.18e-01 | 100.0% | 89.7% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.61 | 52.0 | 4.73e-01 | 100.0% | 92.0% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.60 | 47.0 | 3.88e-01 | 86.1% | 54.7% |
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.60 | 49.0 | 4.07e-01 | 89.9% | 81.4% |
| 1kplA00 | 1.10.3080.10 | Mainly Alpha › Orthogonal Bundle › Clc chloride channel › Clc chloride channel | 0.60 | 53.0 | 3.33e-01 | 100.0% | 29.5% |
| 6vvoE02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.60 | 41.0 | 3.89e-01 | 72.2% | 67.7% |
| 1p8dB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.60 | 51.0 | 3.71e-01 | 98.7% | 63.6% |
| 1xvpB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.60 | 51.0 | 3.70e-01 | 100.0% | 80.1% |
| 2o57A01 | 1.10.287.840 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like | 0.59 | 45.0 | 4.14e-01 | 82.3% | 87.6% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 50.0 | 3.92e-01 | 97.5% | 75.4% |
| 3ebbA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 46.0 | 3.28e-01 | 87.3% | 50.0% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.58 | 52.0 | 4.25e-01 | 98.7% | 87.5% |
| 2b1eA01 | 1.20.58.1150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 4.03e-01 | 74.7% | 81.4% |
| 4l9mA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.58 | 41.0 | 3.51e-01 | 74.7% | 49.6% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.58 | 48.0 | 4.40e-01 | 94.9% | 91.7% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 47.0 | 4.26e-01 | 98.7% | 64.6% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 48.0 | 3.30e-01 | 96.2% | 84.1% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 39.0 | 3.46e-01 | 72.2% | 61.7% |
| 4fgoA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.57 | 47.0 | 3.72e-01 | 94.9% | 52.5% |
| 2ebfX02 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.57 | 44.0 | 3.71e-01 | 86.1% | 53.1% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.56 | 50.0 | 4.50e-01 | 100.0% | 78.0% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 48.0 | 4.13e-01 | 98.7% | 58.3% |
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.55 | 39.0 | 3.57e-01 | 73.4% | 81.0% |
| 4i9cA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 47.0 | 3.47e-01 | 98.7% | 39.4% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 45.0 | 3.92e-01 | 94.9% | 75.6% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 47.0 | 4.20e-01 | 100.0% | 72.2% |
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 44.0 | 3.19e-01 | 97.5% | 48.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 37.0 | 3.79e-01 | 74.7% | 90.7% |
| 1gu9C00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.52 | 45.0 | 3.57e-01 | 97.5% | 93.5% |
| 1jkwA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 43.0 | 3.41e-01 | 97.5% | 42.6% |
| 5tw1D01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.52 | 45.0 | 3.74e-01 | 100.0% | 62.3% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 43.0 | 3.44e-01 | 98.7% | 78.6% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.51 | 43.0 | 4.23e-01 | 100.0% | 91.9% |
| 8g59R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 41.0 | 2.91e-01 | 91.1% | 64.2% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4390907 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.99 | 96.0 | 7.43e-01 | 100.0% | 52.7% |
| 4278019 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.99 | 96.0 | 7.22e-01 | 100.0% | 49.4% |
| 4508282 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.98 | 95.0 | 7.20e-01 | 100.0% | 49.4% |
| 4299521 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.98 | 95.0 | 7.33e-01 | 100.0% | 52.7% |
| 4123700 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.97 | 93.0 | 7.33e-01 | 100.0% | 54.5% |
| 4310712 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.97 | 93.0 | 7.31e-01 | 100.0% | 55.2% |
| 62158 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.96 | 92.0 | 7.34e-01 | 100.0% | 57.9% |
| 4669976 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.96 | 92.0 | 7.44e-01 | 100.0% | 60.0% |
| 4474302 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.96 | 92.0 | 7.05e-01 | 100.0% | 51.6% |
| 4434935 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.96 | 91.0 | 7.29e-01 | 100.0% | 57.1% |
| 4345299 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 91.0 | 7.10e-01 | 100.0% | 53.3% |
| 4344761 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 91.0 | 7.36e-01 | 100.0% | 59.3% |
| 4295379 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 91.0 | 7.05e-01 | 100.0% | 54.0% |
| 4569734 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 89.0 | 7.33e-01 | 100.0% | 60.0% |
| 3587004 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 90.0 | 7.06e-01 | 100.0% | 54.4% |
| 4255608 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 87.0 | 6.65e-01 | 96.2% | 49.1% |
| 4636033 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 86.0 | 6.96e-01 | 94.9% | 55.6% |
| 4397294 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 90.0 | 7.12e-01 | 100.0% | 56.6% |
| 3951008 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.95 | 90.0 | 6.96e-01 | 100.0% | 51.6% |
| 4636592 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 89.0 | 7.05e-01 | 100.0% | 55.2% |
| 4115617 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 89.0 | 7.05e-01 | 100.0% | 55.9% |
| 4371771 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 90.0 | 7.16e-01 | 100.0% | 57.1% |
| 4573533 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 89.0 | 7.14e-01 | 100.0% | 57.1% |
| 4413687 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 90.0 | 6.93e-01 | 100.0% | 51.6% |
| 4295547 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 89.0 | 7.04e-01 | 100.0% | 55.2% |
| 4249392 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.94 | 85.0 | 7.01e-01 | 94.9% | 59.4% |
| 4425726 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 87.0 | 7.03e-01 | 97.5% | 58.5% |
| 4198348 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 89.0 | 7.29e-01 | 100.0% | 60.8% |
| 4359074 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 88.0 | 6.91e-01 | 100.0% | 54.0% |
| 4156355 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 84.0 | 6.43e-01 | 94.9% | 46.9% |
| 4106318 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 88.0 | 6.51e-01 | 100.0% | 44.1% |
| 4426612 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.93 | 88.0 | 7.14e-01 | 100.0% | 59.3% |
| 4069762 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 88.0 | 6.67e-01 | 100.0% | 47.9% |
| 4238120 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 87.0 | 6.18e-01 | 100.0% | 38.0% |
| 4600685 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 87.0 | 6.98e-01 | 100.0% | 57.9% |
| 4143925 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 87.0 | 6.88e-01 | 100.0% | 55.2% |
| 5022243 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 85.0 | 6.71e-01 | 97.5% | 53.1% |
| 5022260 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.92 | 85.0 | 6.78e-01 | 97.5% | 55.0% |
| 5022218 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.91 | 85.0 | 7.29e-01 | 97.5% | 67.0% |
| 4970826 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.90 | 83.0 | 6.57e-01 | 97.5% | 53.8% |
| 5022215 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.90 | 82.0 | 6.84e-01 | 96.2% | 60.8% |
| 4075945 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.89 | 80.0 | 6.42e-01 | 96.2% | 53.8% |
| 4972252 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.89 | 83.0 | 6.63e-01 | 98.7% | 55.7% |
| 3589948 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.88 | 81.0 | 6.51e-01 | 98.7% | 55.0% |
| 3807641 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.88 | 83.0 | 6.37e-01 | 100.0% | 51.2% |
| 4997589 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.87 | 79.0 | 6.47e-01 | 97.5% | 57.0% |
| 3353480 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 45.0 | 3.87e-01 | 74.7% | 43.2% |
| 3542152 | 397.7.1.7 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP | 0.67 | 58.0 | 5.65e-01 | 100.0% | 95.6% |
| 5041310 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.65 | 56.0 | 4.07e-01 | 100.0% | 64.6% |
| 5000894 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.65 | 56.0 | 3.64e-01 | 100.0% | 22.8% |
| 3491190 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.65 | 55.0 | 5.05e-01 | 97.5% | 99.0% |
| 3199378 | 6088.1.1.1 ↗ | alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB | 0.64 | 55.0 | 5.35e-01 | 100.0% | 91.1% |
| 5073280 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.64 | 55.0 | 3.53e-01 | 100.0% | 20.7% |
| 3741847 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.63 | 53.0 | 5.06e-01 | 97.5% | 99.0% |
| 4928468 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.62 | 50.0 | 4.83e-01 | 88.6% | 83.1% |
| 3942592 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 50.0 | 4.18e-01 | 88.6% | 86.2% |
| 4960056 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.61 | 54.0 | 5.12e-01 | 100.0% | 88.4% |
| 5045435 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 50.0 | 3.98e-01 | 89.9% | 88.7% |
| 3961048 | 4953.1.1.7 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › AI-2E_transport | 0.61 | 50.0 | 4.83e-01 | 96.2% | 81.1% |
| 3295267 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.60 | 50.0 | 3.90e-01 | 91.1% | 68.2% |
| 5078313 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.59 | 50.0 | 3.80e-01 | 97.5% | 44.9% |
| 3253930 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 40.0 | 3.58e-01 | 72.2% | 70.8% |
| 3180704 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.58 | 49.0 | 4.41e-01 | 97.5% | 67.8% |
| 3727713 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.57 | 48.0 | 3.90e-01 | 100.0% | 65.3% |
| 3584334 | 604.12.1.56 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER | 0.56 | 39.0 | 3.79e-01 | 73.4% | 73.3% |
| 3742721 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.56 | 47.0 | 4.42e-01 | 97.5% | 78.0% |
| 3259816 | 592.6.1.2 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 | 0.55 | 47.0 | 4.27e-01 | 97.5% | 81.8% |
| 3903052 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 3.59e-01 | 88.6% | 64.8% |
| 3901327 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.54 | 39.0 | 3.48e-01 | 77.2% | 70.4% |
| 3736610 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 42.0 | 3.91e-01 | 89.9% | 93.0% |
| 185159 | 3552.1.1.1 ↗ | alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 | 0.51 | 43.0 | 4.19e-01 | 100.0% | 88.8% |
| 4142124 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.50 | 43.0 | 2.96e-01 | 100.0% | 56.4% |