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CAKLQF020000014.1__CAH1087175.1__SAMEA5780031_02622__00043
Bact-VirCAKLQF020000014.1__CAH1087175.1__SAMEA5780031_02622__00043
Identity
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-97
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20552.5 best | HTH_62 | 75.5 | 3.70e-21 | 100.0% | 72.2% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 56.0 | 5.33e-01 | 98.1% | 73.0% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.66 | 58.0 | 4.49e-01 | 100.0% | 70.6% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.64 | 51.0 | 4.89e-01 | 90.6% | 91.9% |
| 1lddA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 4.88e-01 | 98.1% | 73.0% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.63 | 52.0 | 4.02e-01 | 100.0% | 86.9% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.53e-01 | 100.0% | 64.4% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.61e-01 | 94.3% | 85.4% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.62 | 49.0 | 4.20e-01 | 100.0% | 52.8% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 50.0 | 4.37e-01 | 96.2% | 69.5% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 46.0 | 4.47e-01 | 90.6% | 91.9% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 47.0 | 4.31e-01 | 96.2% | 82.3% |
| 4wzsB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 47.0 | 3.71e-01 | 88.7% | 41.6% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 44.0 | 4.02e-01 | 84.9% | 69.2% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 50.0 | 4.89e-01 | 100.0% | 95.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 44.0 | 3.98e-01 | 90.6% | 67.9% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 36.0 | 3.46e-01 | 100.0% | 55.7% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.56 | 47.0 | 3.67e-01 | 100.0% | 84.5% |
| 2m7lA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 41.0 | 3.59e-01 | 81.1% | 74.4% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.56 | 47.0 | 3.99e-01 | 98.1% | 58.1% |
| 6ofsA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 44.0 | 3.01e-01 | 90.6% | 66.0% |
| 8bixC01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 3.02e-01 | 98.1% | 70.1% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.55e-01 | 90.6% | 66.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943619 | 101.1.1.258 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_62 | 0.96 | 90.0 | 8.90e-01 | 100.0% | 96.4% |
| 3969972 | 101.1.5.2 ↗ | alpha arrays › HTH › HTH › Anti-sigma factor AsiA › HTH_62 | 0.93 | 87.0 | 8.62e-01 | 100.0% | 96.4% |
| 3737539 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.76 | 64.0 | 5.62e-01 | 100.0% | 62.5% |
| 4028797 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.71 | 57.0 | 5.34e-01 | 94.3% | 70.8% |
| 4957413 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.71 | 56.0 | 5.74e-01 | 98.1% | 92.0% |
| 4029375 | 101.1.2.663 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7602 | 0.70 | 57.0 | 4.87e-01 | 100.0% | 55.6% |
| 5032641 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.69 | 62.0 | 4.87e-01 | 100.0% | 49.1% |
| 4679974 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.69 | 56.0 | 4.99e-01 | 100.0% | 62.7% |
| 3930425 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 54.0 | 4.01e-01 | 100.0% | 33.1% |
| 5042947 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.68 | 51.0 | 5.21e-01 | 96.2% | 86.0% |
| 4969624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 53.0 | 4.87e-01 | 98.1% | 65.7% |
| 2639344 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 57.0 | 4.48e-01 | 100.0% | 51.3% |
| 3228866 | 101.6.1.0 ↗ | alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C | 0.66 | 56.0 | 4.91e-01 | 96.2% | 73.8% |
| 3489419 | 101.1.1.90 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N | 0.65 | 51.0 | 4.42e-01 | 96.2% | 55.3% |
| 1560732 | 109.4.1.284 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MtxA_C | 0.64 | 44.0 | 3.75e-01 | 88.7% | 42.9% |
| 5074539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 50.0 | 4.61e-01 | 94.3% | 65.7% |
| 4413281 | 101.1.1.90 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N | 0.64 | 47.0 | 4.86e-01 | 96.2% | 90.0% |
| 5047300 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.63 | 44.0 | 4.17e-01 | 88.7% | 60.0% |
| 4979742 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 4.29e-01 | 96.2% | 56.2% |
| 3169050 | 101.1.2.94 ↗ | alpha arrays › HTH › HTH › winged helix domain › ANAPC2 | 0.63 | 53.0 | 4.51e-01 | 98.1% | 58.1% |
| 5060530 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 4.32e-01 | 100.0% | 61.6% |
| 5053839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.75e-01 | 98.1% | 84.0% |
| 3650941 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 52.0 | 4.92e-01 | 96.2% | 80.0% |
| 5042064 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.62 | 45.0 | 3.55e-01 | 98.1% | 37.3% |
| 3926693 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.62 | 48.0 | 3.69e-01 | 90.6% | 39.3% |
| 3224103 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 50.0 | 3.92e-01 | 96.2% | 40.0% |
| 4955367 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 4.59e-01 | 100.0% | 72.9% |
| 3410932 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 49.0 | 4.16e-01 | 94.3% | 91.6% |
| 3732279 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.60 | 39.0 | 3.75e-01 | 100.0% | 58.3% |
| 1823203 | 101.32.1.2 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › SO_alpha_A3 | 0.60 | 51.0 | 5.03e-01 | 100.0% | 87.7% |
| 3372110 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.60 | 48.0 | 4.51e-01 | 100.0% | 72.9% |
| 3173335 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.59 | 46.0 | 4.47e-01 | 96.2% | 76.7% |
| 4997092 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.59 | 45.0 | 4.14e-01 | 92.5% | 64.3% |
| 5024512 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 43.0 | 4.41e-01 | 96.2% | 88.0% |
| 5021067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 3.71e-01 | 100.0% | 44.8% |
| 5046896 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 47.0 | 4.23e-01 | 98.1% | 85.0% |
| 3677227 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 48.0 | 4.57e-01 | 100.0% | 87.7% |
| 4984211 | 3932.1.1.0 ↗ | alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain | 0.57 | 45.0 | 4.35e-01 | 90.6% | 76.7% |
| 3711005 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.57 | 44.0 | 4.34e-01 | 94.3% | 78.3% |
| 3611890 | 1091.1.1.0 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 | 0.57 | 44.0 | 4.29e-01 | 94.3% | 78.3% |
| 1154797 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.56 | 41.0 | 3.60e-01 | 81.1% | 75.3% |
| 4342260 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.55 | 42.0 | 4.40e-01 | 96.2% | 97.8% |
| 3516468 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.53 | 37.0 | 3.57e-01 | 94.3% | 61.4% |
| 4037084 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.68e-01 | 100.0% | 65.7% |
| 3255248 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.51 | 41.0 | 3.84e-01 | 94.3% | 72.9% |
| 3777065 | 101.1.1.89 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 | 0.51 | 42.0 | 4.08e-01 | 100.0% | 85.9% |