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CAKLQF020000015.1__CAH1087455.1__SAMEA5780031_02694__00015

Bact-Vir

CAKLQF020000015.1__CAH1087455.1__SAMEA5780031_02694__00015

Identity

Kingdom:
phage

Quality

96.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-241
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04909.21 best Amidohydro_2 97.3 1.90e-27 99.6% 88.1%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6kA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 1.00 99.0 9.41e-01 100.0% 89.1%
2ffiA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.94 92.0 8.68e-01 100.0% 87.5%
4do7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.88 85.0 7.92e-01 100.0% 88.4%
4mupB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.87 84.0 7.84e-01 100.0% 83.6%
4d8lA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.87 84.0 7.74e-01 100.0% 81.3%
2zc1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.74 70.0 6.18e-01 100.0% 83.5%
3cjpA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.72 68.0 6.55e-01 100.0% 89.3%
3ddmA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.72 59.0 5.98e-01 100.0% 86.6%
2bb0A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.71 68.0 6.22e-01 100.0% 88.6%
1f6kC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 59.0 5.53e-01 100.0% 71.9%
3f4wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 57.0 6.06e-01 100.0% 95.3%
1fkwA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.71 67.0 5.79e-01 100.0% 85.4%
3ciwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 5.79e-01 100.0% 78.1%
3paoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.70 66.0 5.99e-01 100.0% 88.9%
3ik4A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.69 59.0 5.96e-01 100.0% 88.8%
3cawA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.69 58.0 5.93e-01 100.0% 92.0%
3qc0A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.69 65.0 6.20e-01 100.0% 96.7%
5b7yA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.69 64.0 6.18e-01 100.0% 96.3%
3op2A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.69 58.0 5.85e-01 100.0% 88.1%
3vylA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.68 64.0 5.93e-01 100.0% 91.9%
3e0lA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.68 65.0 5.86e-01 100.0% 85.4%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 63.0 6.37e-01 100.0% 98.8%
1yeyA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.68 56.0 5.12e-01 84.9% 73.7%
1ehaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 62.0 5.33e-01 100.0% 93.9%
2ekcB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 54.0 5.26e-01 87.8% 99.6%
4xk2B00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.64 60.0 5.44e-01 100.0% 81.9%
6cv6D00 3.40.50.9100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II 0.63 33.0 4.15e-01 87.8% 82.6%
1vd6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.62 50.0 5.24e-01 100.0% 91.3%
4ew6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 30.0 4.10e-01 85.3% 88.3%
3tr9B00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.62 58.0 5.54e-01 100.0% 89.6%
4nicA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 28.0 3.87e-01 73.5% 88.9%
4ldaB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 30.0 3.93e-01 75.2% 88.2%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.59 50.0 5.12e-01 93.7% 92.6%
1a2oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 31.0 4.01e-01 76.1% 93.2%
3ks6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.56 52.0 5.17e-01 100.0% 96.4%
3o9zA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 30.0 3.90e-01 71.4% 93.1%
3qq5A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 33.0 3.83e-01 84.5% 82.3%
4gqaD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 31.0 3.96e-01 97.5% 97.8%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 41.0 4.20e-01 98.7% 78.6%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.54 35.0 4.11e-01 88.2% 93.3%
3db2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 30.0 3.84e-01 84.0% 92.1%
4n82B00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 32.0 3.88e-01 98.7% 90.2%
1qv9A01 3.40.50.10830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 0.53 32.0 3.84e-01 81.9% 89.0%
3thoB01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 48.0 4.77e-01 100.0% 97.6%
1gcuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 30.0 3.69e-01 100.0% 91.0%
3m2tB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 31.0 3.54e-01 100.0% 78.7%
3e82B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 31.0 3.88e-01 90.8% 97.3%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 33.0 3.99e-01 81.5% 99.4%
2we8A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 32.0 3.87e-01 91.2% 95.5%
1reqB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.51 31.0 3.82e-01 99.2% 100.0%
1mdbA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 31.0 3.71e-01 90.8% 89.9%
4jemA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 31.0 3.68e-01 93.3% 89.8%
6norA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 30.0 3.69e-01 81.1% 93.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
154436 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 1.00 99.0 9.41e-01 100.0% 89.1%
3385867 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.96 94.0 8.95e-01 100.0% 89.4%
8942 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.94 92.0 8.70e-01 100.0% 88.2%
4279207 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.91 88.0 8.10e-01 100.0% 82.6%
3198109 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.90 88.0 7.97e-01 100.0% 88.0%
4961423 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.89 86.0 7.96e-01 100.0% 90.0%
4395945 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.89 86.0 7.87e-01 100.0% 84.1%
148415 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.88 86.0 7.93e-01 100.0% 88.5%
4543958 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.88 85.0 7.84e-01 100.0% 82.4%
3285304 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.87 83.0 7.72e-01 98.3% 86.3%
3823474 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.87 84.0 7.65e-01 100.0% 83.0%
3303648 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.87 84.0 7.65e-01 100.0% 83.0%
3486638 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.83 79.0 6.62e-01 100.0% 86.1%
4978139 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.78 75.0 6.78e-01 100.0% 83.6%
4984754 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.75 72.0 6.75e-01 100.0% 87.9%
5065153 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.75 72.0 6.93e-01 100.0% 89.8%
169576 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.71 57.0 6.06e-01 100.0% 95.3%
4134169 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.69 56.0 5.93e-01 100.0% 94.0%
3411950 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 60.0 5.86e-01 100.0% 85.1%
5071968 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 61.0 6.07e-01 100.0% 91.4%
4970320 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 64.0 6.16e-01 100.0% 93.3%
4926829 2002.1.1.79 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 0.67 58.0 5.96e-01 100.0% 95.6%
4933100 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 52.0 4.74e-01 79.0% 72.3%
4972142 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.67 51.0 5.29e-01 79.0% 90.2%
5040842 2002.1.1.28 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.67 55.0 5.85e-01 100.0% 98.6%
3588930 2002.1.1.381 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF7916 0.65 61.0 5.58e-01 100.0% 84.5%
4589032 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.64 60.0 5.61e-01 100.0% 93.8%
4380787 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.63 59.0 5.37e-01 100.0% 92.3%
5082040 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 58.0 5.31e-01 98.3% 90.6%
4971725 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.62 58.0 5.18e-01 100.0% 85.8%
5058430 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 54.0 4.90e-01 92.4% 77.2%
5058637 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 39.0 4.67e-01 86.6% 91.9%
5057587 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 58.0 5.13e-01 100.0% 91.6%
140638 2002.1.1.24 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ALAD 0.62 58.0 5.04e-01 100.0% 84.4%
5036242 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 57.0 5.00e-01 100.0% 73.8%
5051687 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 54.0 4.79e-01 92.9% 77.0%
3604114 2002.1.1.122 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS 0.61 57.0 4.91e-01 100.0% 81.1%
4995751 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 56.0 5.10e-01 100.0% 94.1%
4291296 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.60 32.0 3.94e-01 98.7% 81.4%
4234884 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.58 31.0 4.03e-01 100.0% 88.9%
4521555 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 53.0 5.29e-01 98.3% 95.9%
4955271 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 53.0 4.80e-01 99.2% 74.3%
5041363 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.57 51.0 5.21e-01 99.2% 97.4%
5066470 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 48.0 4.52e-01 90.3% 83.7%
3948550 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.56 53.0 4.76e-01 100.0% 88.7%
4235386 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.56 30.0 3.60e-01 75.2% 75.6%
5048460 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.56 30.0 3.75e-01 91.6% 85.0%
5049542 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.55 30.0 3.93e-01 75.6% 94.6%
3891379 2004.1.1.122 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IIGP 0.55 37.0 3.82e-01 99.2% 69.7%
5066957 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 50.0 4.64e-01 99.6% 92.8%
4933365 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 50.0 4.47e-01 100.0% 78.5%
4983233 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.54 32.0 3.85e-01 100.0% 87.7%
3958217 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.53 35.0 4.05e-01 88.2% 92.4%
5053099 2007.3.1.3 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig 0.53 34.0 3.98e-01 73.1% 91.5%
4999363 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.52 31.0 3.61e-01 72.3% 84.4%
2511302 2003.1.1.61 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.51 34.0 4.06e-01 81.9% 98.2%
3953364 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 32.0 3.51e-01 90.3% 75.3%
4647348 2003.1.1.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.51 28.0 3.60e-01 100.0% 90.7%
5078276 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.50 46.0 4.31e-01 99.2% 98.6%
4963881 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.50 45.0 4.34e-01 99.6% 95.3%